RchiOBHm_Chr1g0354201

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000285
Physical Location & Seq
Reverse (-)
47270210 .. 47271184
975 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57978

Sequence Viewer

Length: 789 bp
ATGAATGGAACTATTCCAGAAAGCATTGGACAACTTGGAGAGTTAAAGTCCTTGTATCTCGACAGTTGTTCATGGGAAGGCTTTATATCCGAAAATCATTTTCAGAACACTAGCAGATTGAAAGACTTTACTTTATCCAGCGAGGCATCCAACTCTTTGGTTTTCAACGTCAATACAATACCCGATTGGTTTTGGAGATTTTCTCCATTCCTTGAGTATGTGGTGTTATCTCATAACCAGTTAAGAGGAAACCTTCCCAAGTCTGTGAGTTCTACTATTCAATACGTTAATTTGAAAAATAACAGTTTGGTAGGGTCCCTTCCACTTTGGCCAAATGTAACACAACTAAGCTTGGCAAACAATAGATTTTCAGGGCCTATTCCTATTGGCCCCGAGATGTCAAAGTTGGGATTGGACGGGTTGCAATATTTGAAGGTCATAGACTTTTCAAATAACAATCTATTTGGTGAAATCTCAAGCTCCATGTGCTCCCAACTACCATCACTCAAATGGTTGAGATTAAGCAACAATAATCTTTCTGGAATCTTGAGTCGTCTTTGCAAACTTGCAGAAATCTTTCTGGCACTTGATCTGGCAGGAAACAAGTTTTCCGGCACCATACCATATTGTATTGGAGAAAACCTTCATACATTGTCTTATTTACTTCTAGGAGCCAACAAGTTCATAGGAAATATTCCTCATCAATTATGCGATCTCTCCTCTCTTCAGGTTTTAGACCTTTCCCAAAATAATATATTTGGCTCCATTCCTGCATGTCTTGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

262

Amino Acids

28.88

Weight (kDa)

6.07

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 139 - 179 3.8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 710
AgsI TTSAA 6 cut(s) 121, 166, 281, 295, 433, 450
AluBI AGCT 2 cut(s) 351, 480
AluI AGCT 2 cut(s) 351, 480
Alw21I GWGCWC 1 cut(s) 491
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 3 cut(s) 329, 374, 388
Asp700I GAANNNNTTC 2 cut(s) 576, 642
AspS9I GGNCC 3 cut(s) 315, 374, 389
AsuHPI GGTGA 1 cut(s) 479
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 315
BalI TGGCCA 1 cut(s) 331
BanI GGYRCC 1 cut(s) 614
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
Bbv12I GWGCWC 1 cut(s) 491
BccI CCATC 1 cut(s) 508
BfaI CTAG 2 cut(s) 111, 668
Bme18I GGWCC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 315, 374, 389
BmiI GGNNCC 6 cut(s) 316, 317, 391, 616, 673, 763
BmsI GCATC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpuEI CTTGAG 3 cut(s) 233, 460, 568
Bse1I ACTGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 709
BshFI GGCC 3 cut(s) 331, 376, 390
BshNI GGYRCC 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 491
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 612
BslFI GGGAC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 3 cut(s) 331, 376, 390
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 491
Bsp143I GATC 2 cut(s) 589, 712
BspANI GGCC 3 cut(s) 331, 376, 390
BspLI GGNNCC 6 cut(s) 316, 317, 391, 616, 673, 763
BspT107I GGYRCC 1 cut(s) 614
BsrI ACTGG 1 cut(s) 238
BssMI GATC 2 cut(s) 589, 712
Bst4CI ACNGT 2 cut(s) 65, 305
Bst6I CTCTTC 1 cut(s) 729
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 2 cut(s) 592, 715
BstMBI GATC 2 cut(s) 589, 712
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 777
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 3 cut(s) 331, 376, 390
BtsCI GGATG 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 315, 374, 389
CviAII CATG 3 cut(s) 72, 484, 774
CviJI RGCY 8 cut(s) 81, 331, 351, 376, 390, 480, 674, 762
CviKI_1 RGCY 8 cut(s) 81, 331, 351, 376, 390, 480, 674, 762
DdeI CTNAG 1 cut(s) 347
DpnI GATC 2 cut(s) 591, 714
DpnII GATC 2 cut(s) 589, 712
EaeI YGGCCR 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 315, 374
FaeI CATG 3 cut(s) 75, 487, 777
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 71, 483, 773
FokI GGATG 1 cut(s) 133
FspBI CTAG 2 cut(s) 111, 668
HaeIII GGCC 3 cut(s) 331, 376, 390
HapII CCGG 1 cut(s) 612
Hin1II CATG 3 cut(s) 75, 487, 777
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 2 cut(s) 543, 550
HpaII CCGG 1 cut(s) 612
HphI GGTGA 1 cut(s) 479
Hpy188I TCNGA 2 cut(s) 91, 105
Hpy188III TCNNGA 4 cut(s) 17, 59, 540, 547
HpyAV CCTTC 5 cut(s) 71, 263, 329, 427, 653
HpyCH4III ACNGT 2 cut(s) 65, 305
HpyCH4IV ACGT 2 cut(s) 168, 285
HpyCH4V TGCA 4 cut(s) 424, 561, 569, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 2 cut(s) 168, 285
Hsp92II CATG 3 cut(s) 75, 487, 777
KflI GGGWCCC 1 cut(s) 315
Kzo9I GATC 2 cut(s) 589, 712
LmnI GCTCC 4 cut(s) 485, 494, 671, 767
LweI GCATC 1 cut(s) 155
MaeI CTAG 2 cut(s) 111, 668
MaeII ACGT 2 cut(s) 168, 285
MaeIII GTNAC 1 cut(s) 337
MalI GATC 2 cut(s) 591, 714
MboI GATC 2 cut(s) 589, 712
MboII GAAGA 1 cut(s) 716
MhlI GDGCHC 1 cut(s) 491
MlsI TGGCCA 1 cut(s) 331
MluCI AATT 2 cut(s) 289, 704
MluNI TGGCCA 1 cut(s) 331
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 4 cut(s) 136, 239, 708, 730
Mox20I TGGCCA 1 cut(s) 331
MroXI GAANNNNTTC 2 cut(s) 576, 642
MscI TGGCCA 1 cut(s) 331
MseI TTAA 4 cut(s) 44, 242, 288, 521
MslI CAYNNNNRTG 1 cut(s) 508
Msp20I TGGCCA 1 cut(s) 331
MspI CCGG 1 cut(s) 612
MwoI GCNNNNNNNGC 1 cut(s) 486
NdeII GATC 2 cut(s) 589, 712
NlaIII CATG 3 cut(s) 75, 487, 777
NlaIV GGNNCC 6 cut(s) 316, 317, 391, 616, 673, 763
NspI RCATGY 1 cut(s) 777
PdmI GAANNNNTTC 2 cut(s) 576, 642
PfeI GAWTC 1 cut(s) 543
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PpuMI RGGWCCY 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 315
PspN4I GGNNCC 6 cut(s) 316, 317, 391, 616, 673, 763
PspPI GGNCC 3 cut(s) 315, 374, 389
PspPPI RGGWCCY 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 508
SaqAI TTAA 4 cut(s) 44, 242, 288, 521
Sau3AI GATC 2 cut(s) 589, 712
Sau96I GGNCC 3 cut(s) 315, 374, 389
SchI GAGTC 1 cut(s) 559
SduI GDGCHC 1 cut(s) 491
SetI ASST 9 cut(s) 171, 255, 288, 353, 438, 482, 645, 732, 741
SfaNI GCATC 1 cut(s) 155
SinI GGWCC 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 3 cut(s) 212, 475, 547
SmoI CTYRAG 3 cut(s) 212, 475, 547
Sse9I AATT 2 cut(s) 289, 704
SspI AATATT 2 cut(s) 428, 694
SspMI CTAG 2 cut(s) 111, 668
TaaI ACNGT 2 cut(s) 65, 305
TaiI ACGT 2 cut(s) 171, 288
TaqI TCGA 1 cut(s) 60
TasI AATT 2 cut(s) 289, 704
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 4 cut(s) 44, 242, 288, 521
Tru9I TTAA 4 cut(s) 44, 242, 288, 521
TspDTI ATGAA 4 cut(s) 17, 60, 635, 673
VpaK11BI GGWCC 1 cut(s) 315
XceI RCATGY 1 cut(s) 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 507
XmnI GAANNNNTTC 2 cut(s) 576, 642
XspI CTAG 2 cut(s) 111, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.