Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007159.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 484

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007159.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgtatgcaccttttaccttgactttcttgacttggactatcttctatactcttgacaatggtatcggaagcttacatctattagaggctcttgacctctctagtaatcatctttggggtccaattccttcaagcatgacctccatgacttcactaagcaaattgaacttgtcacataacaacttttctgggccaattccatcaaccaaccagttccttaccttcaacgatccaacctcatttggaagaaactcagggctttgtgggcatccattgccaaccgaatgcagctcatcctccaacaatgataaggatccggaggttgaagaagatgaatgtgaaaaaatatggttgtatacaatcacaaggttggggttcattgtgggattttgggctgtgtttagcagcttggtgataaagaggtcatggagacttgcttatttcaagtttcttgacaagatgaaagataggctctccttctgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

161

Amino Acids

18.35

Weight (kDa)

5.74

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	356
AccIII	TCCGGA	1 cut(s)	316
AclWI	GGATC	3 cut(s)	224, 308, 321
AgsI	TTSAA	5 cut(s)	132, 166, 226, 326, 445
AluBI	AGCT	3 cut(s)	72, 291, 408
AluI	AGCT	3 cut(s)	72, 291, 408
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	3 cut(s)	224, 308, 321
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	288, 405
AspS9I	GGNCC	2 cut(s)	119, 191
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	119
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BamHI	GGATCC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	300, 417
BccI	CCATC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	289, 406
BlsI	GCNGC	2 cut(s)	290, 407
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	119, 191
BmiI	GGNNCC	2 cut(s)	120, 315
BmsI	GCATC	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	316
BseGI	GGATG	2 cut(s)	268, 293
BseJI	GATNNNNATC	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	300, 417
BshFI	GGCC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	424
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	193
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	229, 313
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	266
BspEI	TCCGGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	120, 315
BspPI	GGATC	3 cut(s)	224, 308, 321
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	229, 313
BssNAI	GTATAC	1 cut(s)	357
Bst1107I	GTATAC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	155, 253
BstF5I	GGATG	2 cut(s)	268, 293
BstKTI	GATC	2 cut(s)	232, 316
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	2 cut(s)	229, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 274
BstV1I	GCAGC	2 cut(s)	300, 417
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BstZ17I	GTATAC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	268, 293
Cfr13I	GGNCC	2 cut(s)	119, 191
CviAII	CATG	3 cut(s)	136, 145, 426
CviJI	RGCY	8 cut(s)	72, 89, 193, 259, 291, 395, 408, 472
CviKI_1	RGCY	8 cut(s)	72, 89, 193, 259, 291, 395, 408, 472
DdeI	CTNAG	2 cut(s)	155, 253
DpnI	GATC	2 cut(s)	231, 315
DpnII	GATC	2 cut(s)	229, 313
Eco47I	GGWCC	1 cut(s)	119
FaeI	CATG	3 cut(s)	139, 148, 429
FaiI	YATR	8 cut(s)	6, 48, 137, 146, 177, 349, 357, 427
FatI	CATG	3 cut(s)	135, 144, 425
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	289, 406
FokI	GGATG	2 cut(s)	255, 280
Fsp4HI	GCNGC	2 cut(s)	289, 406
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	289, 406
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	3 cut(s)	139, 148, 429
HindIII	AAGCTT	1 cut(s)	70
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	5 cut(s)	28, 53, 92, 317, 452
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	2 cut(s)	138, 232
HpyCH4V	TGCA	2 cut(s)	8, 288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 274
HpyF3I	CTNAG	2 cut(s)	155, 253
Hsp92II	CATG	3 cut(s)	139, 148, 429
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	229, 313
LpnPI	CCDG	5 cut(s)	174, 224, 240, 330, 466
Lsp1109I	GCAGC	2 cut(s)	300, 417
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	2 cut(s)	231, 315
MboI	GATC	2 cut(s)	229, 313
MboII	GAAGA	4 cut(s)	34, 258, 338, 341
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	3 cut(s)	123, 161, 195
MmeI	TCCRAC	2 cut(s)	257, 324
MnlI	CCTC	7 cut(s)	79, 107, 151, 247, 307, 313, 414
MroI	TCCGGA	1 cut(s)	316
MspI	CCGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	265, 274
NdeII	GATC	2 cut(s)	229, 313
NlaIII	CATG	3 cut(s)	139, 148, 429
NlaIV	GGNNCC	2 cut(s)	120, 315
NmuCI	GTSAC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	290, 407
PspN4I	GGNNCC	2 cut(s)	120, 315
PspPI	GGNCC	2 cut(s)	119, 191
PsuI	RGATCY	1 cut(s)	313
SatI	GCNGC	2 cut(s)	289, 406
Sau3AI	GATC	2 cut(s)	229, 313
Sau96I	GGNCC	2 cut(s)	119, 191
SfaNI	GCATC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	3 cut(s)	123, 161, 195
SspMI	CTAG	1 cut(s)	102
TasI	AATT	3 cut(s)	123, 161, 195
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	2 cut(s)	288, 405
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	348, 367, 476
VpaK11BI	GGWCC	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.