Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

83510167 .. 83513151

Gene Structure 2985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGGCTAGCATCAAAACCAGCTTTCGACTTCTTTTGGCTGTTTTCCTTCTTTTGTTAACTGATTCTGTTCCCTCGAGAGCCACTTTAGCCAACTCAGGTGCTAAAAATTTAACTTTGGCTTGCTTTGAGGAGGACCGGAAAGCCCTTCTTGAATTCAAACGCAGCCTTGATGATCCTTTACACCTACTTTCATCTTGGATAGGGGAAGACTGCTGCAAGTGGACGCGCGTACGCTGCAGCAACCAAACAGGCCATGTTGTCGAGCTTGACCTTAGCAACGTCTGTGGAGCAACTGGTGCTTCCAGGGAGGAACGTTCATGCTTAGGTGGTGAGCTATCTCCTTCTTTAGTTAATCTAACACATTTGAACTACTTGAACTTGAGTGGAAACACTTTCCATGGTATTCCCATCCCAAGTTTCATAGGTTCACTCAAGAAGTTGAGGTACCTTGACCTCTCCCTCTCGGGTTTTGTGGGAATGGTCCCTCCTCATCTCGGAAACCTATCGAAATTGCTCCATCTTGATCTCTCAACATATTCAGATATTTGGGTTTCAGATTTAAAGTGGCTCTCTGGTCTCTCTTCTTTGCAATACCTGGACTTGGACCGGTTGAACCTTAGCCAGGCCACAGATCATTGGGTTCATGCTATTAATATGCTTCCTTCACTCTTTGAGTTGCACTTTTCTTCTTGTAAACTTCATGGCAGCCTCCCACTGTCTCTTCCACATGTAAATTTGACGTCACTTTTGGTCATTGACCTCTCATTCAACAACTTTCAATCTTCATTACCTCAATGGCTTTTTAATATTAGTACTCTTGTGACGGCAGAGTTTGATTTTTCTGAATTTACTGGCTCCATTCCGGAAGTTTCATTGCTTAAGGACTTGGAAACTCTGGAACTGTCAAGGAACTCACTTTCCGGTCCATTTCCTACATCAATAGGAAATCTATTACAGTTGAGGACCCTATCCCTTTCACAAAACTCAATCTCTGGTCCACTTCCGGCATCAATAGGAAATCTTTTCCATTTGGAAACCTTGGACGTTTCACAAAACTCAATCTCCGGTCCATTTCCAGCATCAATAAGAAATCTTTTCCAATTGCAAACCTTGGACCTCTCAAAAAACAAAATATCTGGTCCACTTCCTACGTCAGTAGGAAATCTGTCACATTTGACTGTGCTAGACCTTTCCTTCAACATGATGAATGGCAGCATTCCAAAGAGTATTGGACAACTTACAGAATTAGCTAGCCTGAATCTGTTGTCTAATCAATGGGAAGGCGTCATAAGTGAAAGTCATTTGCAGAACCTCACAAGATTGGCTGACCTTCAATTGTCATCGAAGTCTCTGGTTTTCAACATCAGTCAGGAGTGGATTCCTTTCTTCAACGTATCTGTCATCACCATCCGTGATTGCCAATTTGTAAGTCCTGCATTTCCAGCATGGCTTAGAAGCCAATTCATCGTTTATATAGTTCTCTCAAATGTAGGTATTTCAGATACAATACCTGAGTGGTTTTGGAGAAACTCCCCACACCTGAGTTGGTTGGATCTCTCTAATAACCAATTAAGAGGAAAGCTTCCATACGTGGAATTGCCCTCTGGTGGATACGTTAATTTGGAAAACAACAACTTGGAGGGTTCCATTCCACTTTGGCCAAATGTATTATACCTGAAGTTGGGAAGCAATAGATTTTCAGGACCAATTCCGTTGAATATTGGCCAGGAGATGTCAACACTAGGTAGCCTAGACCTTTCTAGGAATAATCTAAGTGGTAGCATTCCCCATTCACTAACTAAACTGAAGAGCTTGAGTTCTATTGATCTCTCGAGGAATAGTTTATCCGGAAGTATCCCTAAGGATTGGGAAGGACTGTCGACCATAGATTTTTCCAATAACAATCTATCTGGTCAAATTCCACCAAGCTTATGCTCTCAGCAAATTTCACCTTCCTGGTTGAGATTAAGTAATAACAATCTTTCTGGGGAGCTTGGACCGTCCTTGAAAAACTGTCAAAACTTGTTTACACTCGATCTTGGAGGGAACAAGTTCTCTGGAGCCATACCACAGTGGATTGGAGACGACCTACGATCCTTGCAATTTTTACTTCTTGGAGAGAACAAGTTCACCGGAAGTATTCCTCAACAACTGTGCGCTCTCTCTGGTCTTCATGTTTTAGACCTATCTCAGAATAATTTATCGGGCTCTATCCCAAGATGTCTTGATAATTTGACACAATTGACAAATTTAGGTAGCATGGCTCAGCCATTTCCCTCTCTTAGGGACACGCCGGATATGGATCCATGGCATATGGATTTGGATCCGAAAGGCGTAGAATATGAATATACTAGTATTCTACCTCTTGTAAACACCATTGACCTGTCAAGCAATAATCTATCCGGAGAAATACCAGAAGAGATGAGAAACCTCTCCAACTTGGGTAGCTTGAATTTATCTCGGAATCTATTGACAGGAAAGATACCGGAGGATATTGGAAGCTTACAACGGCTACAAACTCTTGACCTCTCCTGTAACCATCTTCATGGTCCAATTCCTCTAAGCATGACCGATATGACTTTGCTGAGCAAATTGAACTTGTCATATAACGACTTGTCTGGGCCAATCCCATCTGCTAACCAATTCCAAACCTTCAATGATCCAACTTTATTTGAAGGAAACTTGGGACTTTGTGGCACTCCATTGCCAACTCAGTGCTCATCATCCCCTGATGGGAATCCAGAAGTTAAAGAAGATGCAGGTGAAGATGAAGAAGGGTCTGGAAAGATATGGTTCTATGTAAGCACTACGATGGGATTCATTCTGGGATTTTGGGCTGTTTTTGGCAGTTTAGTGCTAAAGAGGTCATGGAGACATGCCTATTTCAAGTTTGTTGACGACATGAAAGATAGGCTAATTCTGGTAATCACACTGAAATGCATGGCTTGTCTACGCAGAATGACTGAACAAGAAAGACAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

994

Amino Acids

109.63

Weight (kDa)

5.35

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	44 - 80	3.7e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	115 - 299	3.8e-09	Leucine-rich repeat region
LRR_14	PF23598	284 - 489	7.4e-24	Leucine-rich repeat region
LRR_8	PF13855	296 - 354	1.4e-06	Leucine rich repeat
LRR_8	PF13855	319 - 378	4.3e-07	Leucine rich repeat
LRR_8	PF13855	367 - 425	9.3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2750
AatII	GACGTC	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	2750
Acc65I	GGTACC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	444
AccI	GTMKAC	2 cut(s)	1880, 2950
AccII	CGCG	2 cut(s)	226, 228
AccIII	TCCGGA	3 cut(s)	862, 1847, 2402
AclI	AACGTT	1 cut(s)	313
AclWI	GGATC	8 cut(s)	167, 1560, 2088, 2297, 2310, 2318, 2331, 2654
AcoI	YGGCCR	2 cut(s)	1658, 1723
AcsI	RAATTY	8 cut(s)	106, 152, 733, 845, 1917, 1944, 2248, 2452
AcuI	CTGAAG	2 cut(s)	1697, 1826
AcyI	GRCGYC	2 cut(s)	740, 1284
AfaI	GTAC	3 cut(s)	231, 446, 814
AfiI	CCNNNNNNNGG	7 cut(s)	494, 601, 622, 1607, 1681, 2283, 2733
AflII	CTTAAG	1 cut(s)	878
AflIII	ACRYGT	1 cut(s)	727
AgeI	ACCGGT	1 cut(s)	606
AhlI	ACTAGT	1 cut(s)	2351
AjnI	CCWGG	5 cut(s)	302, 594, 621, 1725, 1955
AloI	GAACNNNNNNTCC	2 cut(s)	902, 934
Alw21I	GWGCWC	1 cut(s)	2720
Alw26I	GTCTC	5 cut(s)	581, 723, 1353, 2076, 2866
AlwI	GGATC	8 cut(s)	167, 1560, 2088, 2297, 2310, 2318, 2331, 2654
Ama87I	CYCGRG	3 cut(s)	73, 463, 1831
Aor13HI	TCCGGA	3 cut(s)	862, 1847, 2402
AoxI	GGCC	5 cut(s)	250, 624, 1658, 1723, 2621
ApeKI	GCWGC	6 cut(s)	162, 213, 234, 237, 705, 1212
ApoI	RAATTY	8 cut(s)	106, 152, 733, 845, 1917, 1944, 2248, 2452
ArsI	GACNNNNNNTTYG	2 cut(s)	730, 762
AseI	ATTAAT	1 cut(s)	651
AsiGI	ACCGGT	1 cut(s)	606
Asp700I	GAANNNNTTC	2 cut(s)	2051, 2126
Asp718I	GGTACC	1 cut(s)	444
AspLEI	GCGC	2 cut(s)	228, 2159
AsuHPI	GGTGA	5 cut(s)	341, 1396, 1941, 2122, 2774
AsuNHI	GCTAGC	2 cut(s)	5, 1250
AvaI	CYCGRG	3 cut(s)	73, 463, 1831
AxyI	CCTNAGG	1 cut(s)	1860
BalI	TGGCCA	2 cut(s)	1660, 1725
BamHI	GGATCC	2 cut(s)	2302, 2323
BanI	GGYRCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	2210
BarI	GAAGNNNNNNTAC	2 cut(s)	428, 460
BbsI	GAAGAC	2 cut(s)	213, 2162
Bbv12I	GWGCWC	1 cut(s)	2720
BbvI	GCAGC	6 cut(s)	174, 200, 221, 249, 717, 1224
BccI	CCATC	7 cut(s)	416, 525, 1415, 2547, 2638, 2726, 2806
BceAI	ACGGC	2 cut(s)	840, 2525
BciT130I	CCWGG	5 cut(s)	304, 596, 623, 1727, 1957
BciVI	GTATCC	2 cut(s)	1604, 1865
BcoDI	GTCTC	5 cut(s)	581, 723, 1353, 2076, 2866
BcuI	ACTAGT	1 cut(s)	2351
BfaI	CTAG	7 cut(s)	6, 1184, 1251, 1742, 1751, 1761, 2352
BfmI	CTRYAG	1 cut(s)	235
BfrI	CTTAAG	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	2750
BfuI	GTATCC	2 cut(s)	1604, 1865
BisI	GCNGC	6 cut(s)	163, 214, 235, 238, 706, 1213
BlpI	GCTNAGC	2 cut(s)	2265, 2585
BlsI	GCNGC	6 cut(s)	164, 215, 236, 239, 707, 1214
BmcAI	AGTACT	1 cut(s)	814
Bme1390I	CCNGG	5 cut(s)	304, 596, 623, 1727, 1957
BmeT110I	CYCGRG	3 cut(s)	73, 463, 1831
BmiI	GGNNCC	8 cut(s)	446, 483, 856, 965, 1645, 2062, 2304, 2325
BmrFI	CCNGG	5 cut(s)	304, 596, 623, 1727, 1957
BmsI	GCATC	4 cut(s)	18, 1016, 1088, 2746
BmtI	GCTAGC	2 cut(s)	9, 1254
BpiI	GAAGAC	2 cut(s)	213, 2162
BpmI	CTGGAG	1 cut(s)	2079
Bpu10I	CCTNAGC	3 cut(s)	272, 322, 617
Bpu1102I	GCTNAGC	2 cut(s)	2265, 2585
BpuEI	CTTGAG	3 cut(s)	400, 416, 1834
BsaAI	YACGTR	1 cut(s)	1591
BsaBI	GATNNNNATC	3 cut(s)	2301, 2322, 2736
BsaHI	GRCGYC	2 cut(s)	740, 1284
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	5 cut(s)	303, 397, 1038, 1110, 2306
BsaWI	WCCGGW	9 cut(s)	135, 606, 862, 920, 1064, 1847, 2132, 2402, 2485
BsaXI	ACNNNNNCTCC	2 cut(s)	1046, 1076
Bsc4I	CCNNNNNNNGG	7 cut(s)	494, 601, 622, 1607, 1681, 2283, 2733
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	2 cut(s)	298, 856
Bse21I	CCTNAGG	1 cut(s)	1860
Bse3DI	GCAATG	2 cut(s)	872, 2702
Bse8I	GATNNNNATC	3 cut(s)	2301, 2322, 2736
BseAI	TCCGGA	3 cut(s)	862, 1847, 2402
BseBI	CCWGG	5 cut(s)	304, 596, 623, 1727, 1957
BseDI	CCNNGG	5 cut(s)	303, 397, 1038, 1110, 2306
BseGI	GGATG	3 cut(s)	408, 1407, 2723
BseJI	GATNNNNATC	3 cut(s)	2301, 2322, 2736
BseLI	CCNNNNNNNGG	7 cut(s)	494, 601, 622, 1607, 1681, 2283, 2733
BseMI	GCAATG	2 cut(s)	872, 2702
BseMII	CTCAG	8 cut(s)	108, 1503, 1532, 1952, 2204, 2279, 2576, 2726
BseNI	ACTGG	2 cut(s)	298, 856
BseRI	GAGGAG	2 cut(s)	143, 477
BseXI	GCAGC	6 cut(s)	174, 200, 221, 249, 717, 1224
Bsh1236I	CGCG	2 cut(s)	226, 228
BshFI	GGCC	5 cut(s)	252, 626, 1660, 1725, 2623
BshNI	GGYRCC	1 cut(s)	444
BshTI	ACCGGT	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	2720
BsiHKCI	CYCGRG	3 cut(s)	73, 463, 1831
BsiWI	CGTACG	1 cut(s)	229
BslFI	GGGAC	3 cut(s)	467, 2300, 2700
BslI	CCNNNNNNNGG	7 cut(s)	494, 601, 622, 1607, 1681, 2283, 2733
BsmAI	GTCTC	5 cut(s)	581, 723, 1353, 2076, 2866
BsmBI	CGTCTC	1 cut(s)	2076
BsmFI	GGGAC	3 cut(s)	467, 2300, 2700
BsmI	GAATGC	2 cut(s)	1215, 1782
BsnI	GGCC	5 cut(s)	252, 626, 1660, 1725, 2623
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	3 cut(s)	73, 463, 1831
Bsp1286I	GDGCHC	2 cut(s)	2210, 2720
Bsp13I	TCCGGA	3 cut(s)	862, 1847, 2402
Bsp1720I	GCTNAGC	2 cut(s)	2265, 2585
Bsp19I	CCATGG	2 cut(s)	397, 2306
BspANI	GGCC	5 cut(s)	252, 626, 1660, 1725, 2623
BspCNI	CTCAG	8 cut(s)	107, 1504, 1533, 1951, 2203, 2278, 2577, 2725
BspEI	TCCGGA	3 cut(s)	862, 1847, 2402
BspFNI	CGCG	2 cut(s)	226, 228
BspLI	GGNNCC	8 cut(s)	446, 483, 856, 965, 1645, 2062, 2304, 2325
BspMAI	CTGCAG	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	2750
BspOI	GCTAGC	2 cut(s)	9, 1254
BspPI	GGATC	8 cut(s)	167, 1560, 2088, 2297, 2310, 2318, 2331, 2654
BspQI	GCTCTTC	1 cut(s)	1802
BspT107I	GGYRCC	1 cut(s)	444
BspTI	CTTAAG	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	872, 2702
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	298, 856
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	5 cut(s)	303, 397, 1038, 1110, 2306
BssNI	GRCGYC	2 cut(s)	740, 1284
BssT1I	CCWWGG	4 cut(s)	397, 1038, 1110, 2306
Bst2UI	CCWGG	5 cut(s)	304, 596, 623, 1727, 1957
Bst4CI	ACNGT	9 cut(s)	717, 903, 957, 1180, 1878, 2001, 2015, 2073, 2154
Bst6I	CTCTTC	4 cut(s)	586, 726, 1802, 2412
BstACI	GRCGYC	2 cut(s)	740, 1284
BstAFI	CTTAAG	1 cut(s)	878
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	1591
BstC8I	GCNNGC	3 cut(s)	7, 121, 1252
BstDSI	CCRYGG	2 cut(s)	397, 2306
BstENI	CCTNNNNNAGG	2 cut(s)	620, 2281
BstF5I	GGATG	3 cut(s)	408, 1407, 2723
BstFNI	CGCG	2 cut(s)	226, 228
BstHHI	GCGC	2 cut(s)	228, 2159
BstMAI	GTCTC	5 cut(s)	581, 723, 1353, 2076, 2866
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 234, 296, 1442
BstNI	CCWGG	5 cut(s)	304, 596, 623, 1727, 1957
BstNSI	RCATGY	2 cut(s)	731, 2879
BstSCI	CCNGG	5 cut(s)	302, 594, 621, 1725, 1955
BstSFI	CTRYAG	1 cut(s)	235
BstUI	CGCG	2 cut(s)	226, 228
BstV1I	GCAGC	6 cut(s)	174, 200, 221, 249, 717, 1224
BstV2I	GAAGAC	2 cut(s)	213, 2162
BstX2I	RGATCY	3 cut(s)	1552, 2302, 2323
BstXI	CCANNNNNNTGG	1 cut(s)	2546
BstYI	RGATCY	3 cut(s)	1552, 2302, 2323
Bsu36I	CCTNAGG	1 cut(s)	1860
BsuI	GTATCC	2 cut(s)	1604, 1865
BsuRI	GGCC	5 cut(s)	252, 626, 1660, 1725, 2623
BtgI	CCRYGG	2 cut(s)	397, 2306
BtsCI	GGATG	3 cut(s)	408, 1407, 2723
BtsIMutI	CAGTG	4 cut(s)	713, 2078, 2720, 2930
BveI	ACCTGC	1 cut(s)	2750
Cac8I	GCNNGC	3 cut(s)	7, 121, 1252
CfoI	GCGC	2 cut(s)	228, 2159
Cfr10I	RCCGGY	1 cut(s)	606
CseI	GACGC	2 cut(s)	232, 1273
Csp6I	GTAC	3 cut(s)	230, 445, 813
CspAI	ACCGGT	1 cut(s)	606
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviQI	GTAC	3 cut(s)	230, 445, 813
DraI	TTTAAA	1 cut(s)	561
EaeI	YGGCCR	2 cut(s)	1658, 1723
Eam1104I	CTCTTC	4 cut(s)	586, 726, 1802, 2412
EarI	CTCTTC	4 cut(s)	586, 726, 1802, 2412
Eco130I	CCWWGG	4 cut(s)	397, 1038, 1110, 2306
Eco24I	GRGCYC	1 cut(s)	2210
Eco31I	GGTCTC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	1697, 1826
Eco81I	CCTNAGG	1 cut(s)	1860
Eco88I	CYCGRG	3 cut(s)	73, 463, 1831
EcoNI	CCTNNNNNAGG	2 cut(s)	620, 2281
EcoO109I	RGGNCCY	1 cut(s)	963
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	5 cut(s)	302, 594, 621, 1725, 1955
EcoT14I	CCWWGG	4 cut(s)	397, 1038, 1110, 2306
EcoT22I	ATGCAT	1 cut(s)	2942
EcoT38I	GRGCYC	1 cut(s)	2210
ErhI	CCWWGG	4 cut(s)	397, 1038, 1110, 2306
Esp3I	CGTCTC	1 cut(s)	2076
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	3 cut(s)	467, 2300, 2700
FauNDI	CATATG	1 cut(s)	2313
FblI	GTMKAC	2 cut(s)	1880, 2950
Fnu4HI	GCNGC	6 cut(s)	163, 214, 235, 238, 706, 1213
FokI	GGATG	3 cut(s)	395, 1394, 2710
FriOI	GRGCYC	1 cut(s)	2210
Fsp4HI	GCNGC	6 cut(s)	163, 214, 235, 238, 706, 1213
FspBI	CTAG	7 cut(s)	6, 1184, 1251, 1742, 1751, 1761, 2352
GlaI	GCGC	2 cut(s)	227, 2158
GluI	GCNGC	6 cut(s)	163, 214, 235, 238, 706, 1213
GsuI	CTGGAG	1 cut(s)	2079
HaeIII	GGCC	5 cut(s)	252, 626, 1660, 1725, 2623
HgaI	GACGC	2 cut(s)	232, 1273
HhaI	GCGC	2 cut(s)	228, 2159
Hin1I	GRCGYC	2 cut(s)	740, 1284
Hin6I	GCGC	2 cut(s)	226, 2157
HinP1I	GCGC	2 cut(s)	226, 2157
HincII	GTYRAC	4 cut(s)	57, 1737, 1881, 2896
HindII	GTYRAC	4 cut(s)	57, 1737, 1881, 2896
HindIII	AAGCTT	3 cut(s)	1580, 1927, 2500
HinfI	GANTC	6 cut(s)	62, 1258, 1378, 2464, 2737, 2817
HpaI	GTTAAC	1 cut(s)	57
HphI	GGTGA	5 cut(s)	341, 1396, 1941, 2122, 2774
Hpy188I	TCNGA	8 cut(s)	497, 541, 556, 844, 1501, 2193, 2328, 2463
HpyCH4III	ACNGT	9 cut(s)	717, 903, 957, 1180, 1878, 2001, 2015, 2073, 2154
HpyCH4IV	ACGT	9 cut(s)	279, 313, 740, 1044, 1151, 1392, 1590, 1614, 2981
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 234, 296, 1442
HpySE526I	ACGT	9 cut(s)	279, 313, 740, 1044, 1151, 1392, 1590, 1614, 2981
Hsp92I	GRCGYC	2 cut(s)	740, 1284
HspAI	GCGC	2 cut(s)	226, 2157
Kpn2I	TCCGGA	3 cut(s)	862, 1847, 2402
KpnI	GGTACC	1 cut(s)	448
KspAI	GTTAAC	1 cut(s)	57
LguI	GCTCTTC	1 cut(s)	1802
LmnI	GCTCC	5 cut(s)	287, 519, 860, 1990, 2060
Lsp1109I	GCAGC	6 cut(s)	174, 200, 221, 249, 717, 1224
LweI	GCATC	4 cut(s)	18, 1016, 1088, 2746
MaeI	CTAG	7 cut(s)	6, 1184, 1251, 1742, 1751, 1761, 2352
MaeII	ACGT	9 cut(s)	279, 313, 740, 1044, 1151, 1392, 1590, 1614, 2981
MaeIII	GTNAC	4 cut(s)	741, 820, 1167, 2534
MfeI	CAATTG	3 cut(s)	1100, 1334, 2240
MflI	RGATCY	3 cut(s)	1552, 2302, 2323
MhlI	GDGCHC	2 cut(s)	2210, 2720
MlsI	TGGCCA	2 cut(s)	1660, 1725
MluNI	TGGCCA	2 cut(s)	1660, 1725
MmeI	TCCRAC	3 cut(s)	1530, 2460, 2687
Mox20I	TGGCCA	2 cut(s)	1660, 1725
Mph1103I	ATGCAT	1 cut(s)	2942
MroI	TCCGGA	3 cut(s)	862, 1847, 2402
MroXI	GAANNNNTTC	2 cut(s)	2051, 2126
MscI	TGGCCA	2 cut(s)	1660, 1725
MslI	CAYNNNNRTG	3 cut(s)	2544, 2810, 2935
Msp20I	TGGCCA	2 cut(s)	1660, 1725
MspCI	CTTAAG	1 cut(s)	878
MspR9I	CCNGG	5 cut(s)	304, 596, 623, 1727, 1957
MunI	CAATTG	3 cut(s)	1100, 1334, 2240
Mva1269I	GAATGC	2 cut(s)	1215, 1782
MvaI	CCWGG	5 cut(s)	304, 596, 623, 1727, 1957
MvnI	CGCG	2 cut(s)	226, 228
MwoI	GCNNNNNNNGC	4 cut(s)	86, 234, 296, 1442
NcoI	CCATGG	2 cut(s)	397, 2306
NdeI	CATATG	1 cut(s)	2313
NheI	GCTAGC	2 cut(s)	5, 1250
NlaIV	GGNNCC	8 cut(s)	446, 483, 856, 965, 1645, 2062, 2304, 2325
NmuCI	GTSAC	3 cut(s)	741, 820, 1167
NsiI	ATGCAT	1 cut(s)	2942
NspI	RCATGY	2 cut(s)	731, 2879
PaeR7I	CTCGAG	2 cut(s)	73, 1831
PaqCI	CACCTGC	1 cut(s)	2750
PciI	ACATGT	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	1802
PctI	GAATGC	2 cut(s)	1215, 1782
PdmI	GAANNNNTTC	2 cut(s)	2051, 2126
PfeI	GAWTC	6 cut(s)	62, 1258, 1378, 2464, 2737, 2817
Pfl23II	CGTACG	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	606
PkrI	GCNGC	6 cut(s)	164, 215, 236, 239, 707, 1214
Ppu21I	YACGTR	1 cut(s)	1591
PpuMI	RGGWCCY	1 cut(s)	963
PscI	ACATGT	1 cut(s)	727
PshBI	ATTAAT	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	963
Psp6I	CCWGG	5 cut(s)	302, 594, 621, 1725, 1955
PspGI	CCWGG	5 cut(s)	302, 594, 621, 1725, 1955
PspLI	CGTACG	1 cut(s)	229
PspN4I	GGNNCC	8 cut(s)	446, 483, 856, 965, 1645, 2062, 2304, 2325
PspPPI	RGGWCCY	1 cut(s)	963
PstI	CTGCAG	1 cut(s)	239
PsuI	RGATCY	3 cut(s)	1552, 2302, 2323
RsaI	GTAC	3 cut(s)	231, 446, 814
RsaNI	GTAC	3 cut(s)	230, 445, 813
RseI	CAYNNNNRTG	3 cut(s)	2544, 2810, 2935
SalI	GTCGAC	1 cut(s)	1879
SapI	GCTCTTC	1 cut(s)	1802
SatI	GCNGC	6 cut(s)	163, 214, 235, 238, 706, 1213
ScaI	AGTACT	1 cut(s)	814
ScrFI	CCNGG	5 cut(s)	304, 596, 623, 1727, 1957
SduI	GDGCHC	2 cut(s)	2210, 2720
SfaNI	GCATC	4 cut(s)	18, 1016, 1088, 2746
SfcI	CTRYAG	1 cut(s)	235
Sfr274I	CTCGAG	2 cut(s)	73, 1831
SlaI	CTCGAG	2 cut(s)	73, 1831
SmiMI	CAYNNNNRTG	3 cut(s)	2544, 2810, 2935
SmlI	CTYRAG	6 cut(s)	73, 379, 431, 878, 1813, 1831
SmoI	CTYRAG	6 cut(s)	73, 379, 431, 878, 1813, 1831
SpeI	ACTAGT	1 cut(s)	2351
SspI	AATATT	2 cut(s)	808, 1720
SspMI	CTAG	7 cut(s)	6, 1184, 1251, 1742, 1751, 1761, 2352
StyD4I	CCNGG	5 cut(s)	302, 594, 621, 1725, 1955
StyI	CCWWGG	4 cut(s)	397, 1038, 1110, 2306
TaaI	ACNGT	9 cut(s)	717, 903, 957, 1180, 1878, 2001, 2015, 2073, 2154
TaiI	ACGT	9 cut(s)	282, 316, 743, 1047, 1154, 1395, 1593, 1617, 2984
TaqI	TCGA	8 cut(s)	25, 74, 261, 506, 1343, 1832, 1880, 2034
TaqII	GACCGA	1 cut(s)	2585
TatI	WGTACW	1 cut(s)	812
TfiI	GAWTC	6 cut(s)	62, 1258, 1378, 2464, 2737, 2817
TscAI	CASTG	4 cut(s)	720, 2078, 2720, 2937
TseFI	GTSAC	3 cut(s)	741, 820, 1167
TseI	GCWGC	6 cut(s)	162, 213, 234, 237, 705, 1212
Tsp45I	GTSAC	3 cut(s)	741, 820, 1167
TspGWI	ACGGA	2 cut(s)	1400, 1701
TspRI	CASTG	4 cut(s)	720, 2078, 2720, 2937
Vha464I	CTTAAG	1 cut(s)	878
VspI	ATTAAT	1 cut(s)	651
XagI	CCTNNNNNAGG	2 cut(s)	620, 2281
XapI	RAATTY	8 cut(s)	106, 152, 733, 845, 1917, 1944, 2248, 2452
XceI	RCATGY	2 cut(s)	731, 2879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1542
XhoI	CTCGAG	2 cut(s)	73, 1831
XmiI	GTMKAC	2 cut(s)	1880, 2950
XmnI	GAANNNNTTC	2 cut(s)	2051, 2126
XspI	CTAG	7 cut(s)	6, 1184, 1251, 1742, 1751, 1761, 2352
ZraI	GACGTC	1 cut(s)	741
ZrmI	AGTACT	1 cut(s)	814
Zsp2I	ATGCAT	1 cut(s)	2942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.