Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002737.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

116304 .. 117449

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002737.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgtcaaagtgcgcgtttcttgatctctcaaggaattatttctctggaaatattcctagggattggacgggtttgcaagatttgaaggtcatagacttttcaaataacaatctatctggcgaaatcccaagctccatgtgctcccaactaccatcactcaaatggttgagattaagcaacaacaacctttctgggaatcttgagtcgtctttgcaaacttgcagaaatctctctgcacttgatctgacaggaaacaacttttccggcaccataccagattgtattggagaaaaccttcatacattgtcttatttaattctaaaagccaacaagttcacaggaaatattcctcatcaattatgcgatctctcctctcttcaggttttagacctttcccaaaataatatatctggctccattcctgcatgtcttggtggtttgaaacaaatgacaacaggagatggcttgcctgggaactggctcatgaacttgacggtctataagcatcgttttgatcctatgcatatcgacttaaatgtgaaaggagtagaatatgaatattttgatgatatcataggactcattaaaaagtttgacctatcaagtaataatctatcgggagaaataccagatgaggtgaaaaatctcatggctttgggtagcttgaacttatcccataaccatttgacaggaaagataccagagggtaccggaagcttacataagttagaagcacttgacctctctagtaaccatctttggggtttaattccttcaagcatgacctctatgacttcactaagcaaattgaatttgtcattcaacaacttctctgggccaatcccatcagccaaccaattccccaccttcgatccaacctcatttgaaggaaactccgggctttgtggacctccattgccaacccaatgcagctcagtgtcccataatgatccggctgcgaaggttgatgaagatgaagaagataagtatggaaaattatggttctatgcaagcacagcattggggttcattgtaggattttgggttgtttttggaagtttggtgatcaagaggtcatggagacatgcttacttccagtttcttgacaatatgaaagacaagctttgcttctgtttttggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

381

Amino Acids

42.14

Weight (kDa)

5.66

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	707
AccB1I	GGYRCC	2 cut(s)	266, 707
AccII	CGCG	1 cut(s)	14
AclWI	GGATC	3 cut(s)	509, 866, 944
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	1 cut(s)	760
AgsI	TTSAA	8 cut(s)	85, 102, 442, 667, 777, 811, 823, 887
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	5 cut(s)	132, 663, 717, 933, 1123
AluI	AGCT	5 cut(s)	132, 663, 717, 933, 1123
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	1075
AlwI	GGATC	3 cut(s)	509, 866, 944
AoxI	GGCC	1 cut(s)	836
ApeKI	GCWGC	2 cut(s)	930, 956
ApoI	RAATTY	1 cut(s)	811
Asp700I	GAANNNNTTC	2 cut(s)	38, 294
Asp718I	GGTACC	1 cut(s)	707
AspA2I	CCTAGG	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	836, 908
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	2 cut(s)	649, 1075
AvaII	GGWCC	1 cut(s)	908
AvrII	CCTAGG	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	266, 707
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	942, 943
BccI	CCATC	4 cut(s)	160, 455, 762, 853
BciT130I	CCWGG	1 cut(s)	471
BclI	TGATCA	1 cut(s)	1065
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	1 cut(s)	1075
BfaI	CTAG	2 cut(s)	57, 747
BisI	GCNGC	2 cut(s)	931, 957
BlnI	CCTAGG	1 cut(s)	56
BlsI	GCNGC	2 cut(s)	932, 958
Bme1390I	CCNGG	2 cut(s)	471, 898
Bme18I	GGWCC	1 cut(s)	908
BmgT120I	GGNCC	2 cut(s)	836, 908
BmiI	GGNNCC	3 cut(s)	268, 415, 709
BmrFI	CCNGG	2 cut(s)	471, 898
BmsI	GCATC	1 cut(s)	514
BpuEI	CTTGAG	2 cut(s)	13, 221
BpuMI	CCSGG	1 cut(s)	898
BsaJI	CCNNGG	2 cut(s)	56, 470
BsaWI	WCCGGW	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse1I	ACTGG	2 cut(s)	482, 1096
Bse3DI	GCAATG	1 cut(s)	914
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	56, 470
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMI	GCAATG	1 cut(s)	914
BseMII	CTCAG	1 cut(s)	948
BseNI	ACTGG	2 cut(s)	482, 1096
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	942, 943
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	838
BshNI	GGYRCC	2 cut(s)	266, 707
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	4 cut(s)	264, 711, 897, 953
BslFI	GGGAC	1 cut(s)	925
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	1 cut(s)	1075
BsmFI	GGGAC	1 cut(s)	925
BsnI	GGCC	1 cut(s)	838
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	7 cut(s)	22, 241, 364, 514, 871, 949, 1065
BspANI	GGCC	1 cut(s)	838
BspCNI	CTCAG	1 cut(s)	947
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	3 cut(s)	268, 415, 709
BspPI	GGATC	3 cut(s)	509, 866, 944
BspT107I	GGYRCC	2 cut(s)	266, 707
BsrDI	GCAATG	1 cut(s)	914
BsrI	ACTGG	2 cut(s)	482, 1096
BssECI	CCNNGG	2 cut(s)	56, 470
BssMI	GATC	7 cut(s)	22, 241, 364, 514, 871, 949, 1065
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	467, 1012
BstDEI	CTNAG	2 cut(s)	800, 934
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	7 cut(s)	25, 244, 367, 517, 874, 952, 1068
BstMAI	GTCTC	1 cut(s)	1075
BstMBI	GATC	7 cut(s)	22, 241, 364, 514, 871, 949, 1065
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 1016
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	2 cut(s)	429, 1088
BstSCI	CCNGG	2 cut(s)	469, 896
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	942, 943
BsuRI	GGCC	1 cut(s)	838
BtsIMutI	CAGTG	1 cut(s)	942
Cac8I	GCNNGC	2 cut(s)	467, 1012
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	836, 908
Csp6I	GTAC	1 cut(s)	708
CviAII	CATG	7 cut(s)	136, 426, 484, 649, 781, 1077, 1085
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	2 cut(s)	800, 934
DpnI	GATC	7 cut(s)	24, 243, 366, 516, 873, 951, 1067
DpnII	GATC	7 cut(s)	22, 241, 364, 514, 871, 949, 1065
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	7 cut(s)	139, 429, 487, 652, 784, 1080, 1088
FalI	AAGNNNNNCTT	4 cut(s)	1107, 1139, 1112, 1144
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	7 cut(s)	135, 425, 483, 648, 780, 1076, 1084
FbaI	TGATCA	1 cut(s)	1065
Fnu4HI	GCNGC	2 cut(s)	931, 957
Fsp4HI	GCNGC	2 cut(s)	931, 957
FspBI	CTAG	2 cut(s)	57, 747
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	931, 957
HaeIII	GGCC	1 cut(s)	838
HapII	CCGG	4 cut(s)	264, 711, 897, 953
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	7 cut(s)	139, 429, 487, 652, 784, 1080, 1088
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	715, 1121
HinfI	GANTC	3 cut(s)	196, 203, 579
HpaII	CCGG	4 cut(s)	264, 711, 897, 953
HphI	GGTGA	2 cut(s)	649, 1075
Hpy166II	GTNNAC	2 cut(s)	336, 908
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	7 cut(s)	20, 45, 200, 484, 618, 1069, 1103
Hpy8I	GTNNAC	2 cut(s)	336, 908
HpyAV	CCTTC	6 cut(s)	79, 305, 783, 877, 881, 955
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	8 cut(s)	76, 214, 222, 236, 425, 523, 930, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 1016
HpyF3I	CTNAG	2 cut(s)	800, 934
Hsp92II	CATG	7 cut(s)	139, 429, 487, 652, 784, 1080, 1088
HspAI	GCGC	1 cut(s)	12
KpnI	GGTACC	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	1065
Kzo9I	GATC	7 cut(s)	22, 241, 364, 514, 871, 949, 1065
LmnI	GCTCC	3 cut(s)	137, 146, 419
Lsp1109I	GCAGC	2 cut(s)	942, 943
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	2 cut(s)	57, 747
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	7 cut(s)	24, 243, 366, 516, 873, 951, 1067
MboI	GATC	7 cut(s)	22, 241, 364, 514, 871, 949, 1065
MboII	GAAGA	4 cut(s)	368, 983, 989, 992
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	8 cut(s)	34, 315, 356, 768, 806, 811, 857, 995
MlyI	GAGTC	2 cut(s)	212, 573
MmeI	TCCRAC	1 cut(s)	899
MnlI	CCTC	9 cut(s)	360, 382, 628, 697, 752, 796, 889, 921, 1065
Mph1103I	ATGCAT	1 cut(s)	525
MroXI	GAANNNNTTC	2 cut(s)	38, 294
MseI	TTAA	5 cut(s)	173, 314, 533, 585, 767
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	4 cut(s)	264, 711, 897, 953
MspR9I	CCNGG	2 cut(s)	471, 898
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	138, 1016
NciI	CCSGG	1 cut(s)	898
NdeII	GATC	7 cut(s)	22, 241, 364, 514, 871, 949, 1065
NlaIII	CATG	7 cut(s)	139, 429, 487, 652, 784, 1080, 1088
NlaIV	GGNNCC	3 cut(s)	268, 415, 709
NsiI	ATGCAT	1 cut(s)	525
NspI	RCATGY	2 cut(s)	429, 1088
PagI	TCATGA	1 cut(s)	483
PdmI	GAANNNNTTC	2 cut(s)	38, 294
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	932, 958
PleI	GAGTC	2 cut(s)	211, 573
PpsI	GAGTC	2 cut(s)	211, 573
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	3 cut(s)	268, 415, 709
PspPI	GGNCC	2 cut(s)	836, 908
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	5 cut(s)	173, 314, 533, 585, 767
SatI	GCNGC	2 cut(s)	931, 957
Sau3AI	GATC	7 cut(s)	22, 241, 364, 514, 871, 949, 1065
Sau96I	GGNCC	2 cut(s)	836, 908
SchI	GAGTC	2 cut(s)	212, 573
ScrFI	CCNGG	2 cut(s)	471, 898
SduI	GDGCHC	1 cut(s)	143
SfaNI	GCATC	1 cut(s)	514
SinI	GGWCC	1 cut(s)	908
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	28, 200
SmoI	CTYRAG	2 cut(s)	28, 200
Sse9I	AATT	8 cut(s)	34, 315, 356, 768, 806, 811, 857, 995
SspI	AATATT	3 cut(s)	52, 346, 560
SspMI	CTAG	2 cut(s)	57, 747
StyD4I	CCNGG	2 cut(s)	469, 896
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	528, 870
TasI	AATT	8 cut(s)	34, 315, 356, 768, 806, 811, 857, 995
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	5 cut(s)	173, 314, 533, 585, 767
Tru9I	TTAA	5 cut(s)	173, 314, 533, 585, 767
TscAI	CASTG	1 cut(s)	942
TseI	GCWGC	2 cut(s)	930, 956
TspDTI	ATGAA	7 cut(s)	287, 500, 570, 984, 990, 1018, 1127
TspRI	CASTG	1 cut(s)	942
VpaK11BI	GGWCC	1 cut(s)	908
XapI	RAATTY	1 cut(s)	811
XceI	RCATGY	2 cut(s)	429, 1088
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	38, 294
XspI	CTAG	2 cut(s)	57, 747
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.