Rh4DG391900

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000285
Physical Location & Seq
Forward (+)
60800409 .. 60802689
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG391900.1

Sequence Viewer

Length: 450 bp
ATGGAGAATTTGACTTCTCTTGATCTCTCGAAAAATTATTTATCCGGAGATATCCCTACTGATTGGAAGGGTTTACAAAGCCTAACAACCATAGATTTTTCTGATAACAACCTTTCCGGTCAAATTCCATCCTCCATGTGCTCACAACTACCTTCACTGCATTGGTTGAGATTAAGCAATAACAATCTTTCCGGGGAGCTTGAAAAGCCCTTGCAACACTGTACATACCTGGATGCACTTGATCTTGGAGGAAATAAATTTTCAGGGGCCATATCAACATGGATCGGAGAACGTTCATTCTCATATTTACTTCTCGGAGCCAACATGTTCACTGGAAATATTCCTCAGCAAATATGCAGCCTCTCCTATGTTCAGGTTTTAAACCTTTCTCAAAACATATTATCAGGCTCCGATCCATCCCTAGATGCCTTGGTAATTTGGAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

149

Amino Acids

16.37

Weight (kDa)

4.54

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 63 3.4e-10 Leucine rich repeat
LRR_4 PF12799 3 - 43 1.7e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 44
AclI AACGTT 1 cut(s) 292
AclWI GGATC 2 cut(s) 290, 407
AcsI RAATTY 3 cut(s) 7, 123, 257
AfaI GTAC 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 143
AlwI GGATC 2 cut(s) 290, 407
Aor13HI TCCGGA 1 cut(s) 44
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 3 cut(s) 7, 123, 257
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 369
BccI CCATC 2 cut(s) 136, 424
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 1 cut(s) 193
BfaI CTAG 1 cut(s) 422
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 193, 230
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 3 cut(s) 268, 319, 409
BmrFI CCNGG 2 cut(s) 193, 230
BmsI GCATC 2 cut(s) 223, 415
Bpu10I CCTNAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 192, 429
BsaWI WCCGGW 2 cut(s) 44, 116
Bse1I ACTGG 1 cut(s) 337
BseAI TCCGGA 1 cut(s) 44
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 192, 429
BseGI GGATG 3 cut(s) 128, 238, 416
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 337
BseXI GCAGC 1 cut(s) 369
BshFI GGCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 3 cut(s) 45, 117, 192
BsnI GGCC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 4 cut(s) 22, 241, 282, 412
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 358
BspEI TCCGGA 1 cut(s) 44
BspLI GGNNCC 3 cut(s) 268, 319, 409
BspPI GGATC 2 cut(s) 290, 407
BsrGI TGTACA 1 cut(s) 221
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 192, 429
BssMI GATC 4 cut(s) 22, 241, 282, 412
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 3 cut(s) 128, 238, 416
BstKTI GATC 4 cut(s) 25, 244, 285, 415
BstMBI GATC 4 cut(s) 22, 241, 282, 412
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 2 cut(s) 191, 228
BstV1I GCAGC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 3 cut(s) 128, 238, 416
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 3 cut(s) 155, 217, 330
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 222
CviAII CATG 3 cut(s) 136, 279, 325
CviJI RGCY 7 cut(s) 81, 199, 208, 269, 320, 360, 408
CviKI_1 RGCY 7 cut(s) 81, 199, 208, 269, 320, 360, 408
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 345
DpnI GATC 4 cut(s) 24, 243, 284, 414
DpnII GATC 4 cut(s) 22, 241, 282, 412
DraI TTTAAA 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 429
Eco32I GATATC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 3 cut(s) 139, 282, 328
FatI CATG 3 cut(s) 135, 278, 324
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 3 cut(s) 115, 245, 403
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 1 cut(s) 422
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 1 cut(s) 269
HapII CCGG 3 cut(s) 45, 117, 192
Hin1II CATG 3 cut(s) 139, 282, 328
HpaII CCGG 3 cut(s) 45, 117, 192
Hpy166II GTNNAC 2 cut(s) 74, 330
Hpy188I TCNGA 4 cut(s) 103, 287, 317, 412
Hpy188III TCNNGA 3 cut(s) 20, 28, 45
Hpy8I GTNNAC 2 cut(s) 74, 330
HpyAV CCTTC 2 cut(s) 61, 162
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 4 cut(s) 160, 214, 236, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 3 cut(s) 139, 282, 328
Kpn2I TCCGGA 1 cut(s) 44
Kzo9I GATC 4 cut(s) 22, 241, 282, 412
LmnI GCTCC 3 cut(s) 196, 317, 413
LpnPI CCDG 9 cut(s) 58, 130, 205, 215, 242, 249, 318, 359, 390
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 2 cut(s) 223, 415
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 292
MalI GATC 4 cut(s) 24, 243, 284, 414
MboI GATC 4 cut(s) 22, 241, 282, 412
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 5 cut(s) 7, 34, 123, 257, 435
MnlI CCTC 4 cut(s) 142, 242, 354, 371
MroI TCCGGA 1 cut(s) 44
MseI TTAA 2 cut(s) 173, 380
MspI CCGG 3 cut(s) 45, 117, 192
MspR9I CCNGG 2 cut(s) 193, 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 193
NdeII GATC 4 cut(s) 22, 241, 282, 412
NlaIII CATG 3 cut(s) 139, 282, 328
NlaIV GGNNCC 3 cut(s) 268, 319, 409
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PkrI GCNGC 1 cut(s) 359
PscI ACATGT 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 268, 319, 409
PspPI GGNCC 1 cut(s) 267
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 173, 380
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 4 cut(s) 22, 241, 282, 412
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 2 cut(s) 193, 230
SduI GDGCHC 1 cut(s) 143
SetI ASST 7 cut(s) 114, 154, 201, 231, 295, 378, 387
SfaNI GCATC 2 cut(s) 223, 415
Sse9I AATT 5 cut(s) 7, 34, 123, 257, 435
SspI AATATT 1 cut(s) 340
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 191, 228
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 29
TasI AATT 5 cut(s) 7, 34, 123, 257, 435
TatI WGTACW 1 cut(s) 221
Tru1I TTAA 2 cut(s) 173, 380
Tru9I TTAA 2 cut(s) 173, 380
TscAI CASTG 3 cut(s) 162, 224, 337
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 3 cut(s) 162, 224, 337
XapI RAATTY 3 cut(s) 7, 123, 257
XceI RCATGY 1 cut(s) 328
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.