Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

47255025 .. 47255607

Gene Structure 583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTTTGGATAGCTTGAACTTATCTCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATAAGTTAGAAGCACTTGACCTCTCTGGTAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTGCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCTCACCTTCAATGACCCAACCTCATTTGAAGGAAACTCAGGACTTTGCGGACCTCCATTGCCAACACAATGCAGTTCAGTTAATGATCCAGCTGTGAAGGTTGACGAAGATGAAGAAGATAAGTATGGAAAATTATGGTTCTATGCAAGCACATCATTGGGGTTCATTGTAGGATTTTGGGTTGCTTTTGGAAGTTTGGTGATAAAGAGGTCATGGAGACATGCTTACTTCCAGTTTCTTGACAATATGAAAGACAAGCTTTGCTTCTGTTTTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

164

Amino Acids

18.22

Weight (kDa)

5.9

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	3 - 61	1.4e-08	Leucine rich repeat
LRR_4	PF12799	3 - 37	4.7e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	19, 129, 163, 175, 223, 242
AluBI	AGCT	4 cut(s)	15, 69, 305, 472
AluI	AGCT	4 cut(s)	15, 69, 305, 472
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	188, 263
AsuHPI	GGTGA	2 cut(s)	208, 424
AvaII	GGWCC	1 cut(s)	263
BccI	CCATC	2 cut(s)	114, 205
BcoDI	GTCTC	1 cut(s)	424
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	188, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	445
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	263
BspPI	GGATC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	445
BssMI	GATC	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	152, 250
BstEII	GGTNACC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	437
BstPI	GGTNACC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	188, 263
CviAII	CATG	3 cut(s)	133, 426, 434
CviJI	RGCY	7 cut(s)	5, 15, 69, 190, 203, 305, 472
CviKI_1	RGCY	7 cut(s)	5, 15, 69, 190, 203, 305, 472
DdeI	CTNAG	2 cut(s)	152, 250
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
FaeI	CATG	3 cut(s)	136, 429, 437
FalI	AAGNNNNNCTT	4 cut(s)	456, 488, 461, 493
FatI	CATG	3 cut(s)	132, 425, 433
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	136, 429, 437
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	67, 470
HphI	GGTGA	2 cut(s)	208, 424
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	252, 452
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	4 cut(s)	135, 229, 236, 304
HpyCH4V	TGCA	3 cut(s)	149, 285, 359
HpyF3I	CTNAG	2 cut(s)	152, 250
Hsp92II	CATG	3 cut(s)	136, 429, 437
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	7 cut(s)	27, 66, 84, 171, 237, 315, 458
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	332, 338, 341
MluCI	AATT	5 cut(s)	120, 158, 163, 209, 344
MnlI	CCTC	7 cut(s)	49, 104, 148, 224, 244, 276, 414
MseI	TTAA	2 cut(s)	119, 294
MspA1I	CMGCKG	1 cut(s)	305
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	136, 429, 437
NspI	RCATGY	1 cut(s)	437
PspEI	GGTNACC	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	188, 263
PvuII	CAGCTG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	119, 294
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	188, 263
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	5 cut(s)	120, 158, 163, 209, 344
SsiI	CCGC	1 cut(s)	261
TasI	AATT	5 cut(s)	120, 158, 163, 209, 344
Tru1I	TTAA	2 cut(s)	119, 294
Tru9I	TTAA	2 cut(s)	119, 294
TspDTI	ATGAA	3 cut(s)	339, 367, 476
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	163
XceI	RCATGY	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.