Rmu_sc0002115.1_g000006

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002115.1
OG0000285
Physical Location & Seq
Reverse (-)
27461 .. 28459
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002115.1_g000006.1.cds

Sequence Viewer

Length: 999 bp
atgtgctcacaactacctaggcttttttggttgaaattaagccaaaacaatctttctggggagctcagtccatccttacgagattgtgcaacactatttacgcttgatctcggagggaaccgaatgtctggaacaatacctgaatgggtaggagaaaatctaacttctatgtcatttttacacctaggagccaacatcttcactgggaacattcctgaacaattatgtcaactccctcttaaggttttagacctttctcagaataacatactaggttctatccctaaatgtcttggcaatcttgaagtcatgaaagatgtgggtatcatgtttaagttaccatcctccttctcgcaaccaccaccgagtgtatatttggaattaattgtgaggggaagactatatgaatattctgatctagtaggtctgctgaggatcatagacctttcaagcaataatctatcaggagaaataccagaagagataacaaccttattttccttgaatttatcccaaaaccaactcataggaagaataccagagagtattggaagcttgagctgcttagaatctcttgacctctcgagtaaccatctttgtggtccaattcctctgagcatgacttctatgactgcattgagcagattgaacttatcatacaacaacttgtcggggcctattccatcagcgaaccaattccaaaccttaaatgacccaagcatatttgaagcaaacttgggactttgtgggaatccattaccaatacaatgctcagctttcaacgatggtgatgcacaagctaaagagaacacagttgaagatgaagatggttatgaaaatctatggttctatacaagcacagcatttggattcattgtgggattctgggttgtttttggcagtttggtgattaagaggtcctggagacatgcctatttccagtatcttgacaaaatgaaaaataggtgtgcaatggtattcaatttggacatggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

332

Amino Acids

36.76

Weight (kDa)

4.74

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 1 cut(s) 505
AdeI CACNNNGTG 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 241
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 9 cut(s) 34, 305, 450, 505, 649, 728, 781, 818, 982
AjnI CCWGG 1 cut(s) 920
AluBI AGCT 5 cut(s) 64, 555, 561, 776, 800
AluI AGCT 5 cut(s) 64, 555, 561, 776, 800
Alw21I GWGCWC 2 cut(s) 8, 66
Alw26I GTCTC 1 cut(s) 919
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 1 cut(s) 561
ApoI RAATTY 1 cut(s) 505
AseI ATTAAT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 695
AspA2I CCTAGG 2 cut(s) 17, 184
AspS9I GGNCC 3 cut(s) 602, 674, 918
AsuHPI GGTGA 2 cut(s) 800, 919
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 2 cut(s) 602, 918
AvrII CCTAGG 2 cut(s) 17, 184
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 403
Bbv12I GWGCWC 2 cut(s) 8, 66
BbvCI CCTCAGC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 548
BccI CCATC 6 cut(s) 79, 349, 600, 691, 779, 821
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 1 cut(s) 922
BcoDI GTCTC 1 cut(s) 919
BfaI CTAG 4 cut(s) 18, 185, 272, 419
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 562
BlnI CCTAGG 2 cut(s) 17, 184
BlpI GCTNAGC 1 cut(s) 772
BlsI GCNGC 1 cut(s) 563
Bme1390I CCNGG 1 cut(s) 922
Bme18I GGWCC 2 cut(s) 602, 918
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 3 cut(s) 602, 674, 918
BmiI GGNNCC 3 cut(s) 119, 190, 675
BmrFI CCNGG 1 cut(s) 922
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 781
BmuI ACTGGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 943
Bpu10I CCTNAGC 1 cut(s) 431
Bpu1102I GCTNAGC 1 cut(s) 772
BpuEI CTTGAG 1 cut(s) 577
BsaJI CCNNGG 2 cut(s) 17, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 208, 940
Bse3DI GCAATG 1 cut(s) 978
BseBI CCWGG 1 cut(s) 922
BseDI CCNNGG 2 cut(s) 17, 184
BseGI GGATG 2 cut(s) 71, 341
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 5 cut(s) 79, 272, 422, 605, 786
BseNI ACTGG 2 cut(s) 208, 940
BseXI GCAGC 1 cut(s) 548
BshFI GGCC 1 cut(s) 676
BsiHKAI GWGCWC 2 cut(s) 8, 66
BsiHKCI CYCGRG 1 cut(s) 583
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 919
BsmFI GGGAC 1 cut(s) 753
BsnI GGCC 1 cut(s) 676
BsoBI CYCGRG 1 cut(s) 583
Bsp1286I GDGCHC 2 cut(s) 8, 66
Bsp143I GATC 3 cut(s) 106, 415, 435
Bsp1720I GCTNAGC 1 cut(s) 772
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 5 cut(s) 78, 271, 423, 606, 785
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 119, 190, 675
BspPI GGATC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 978
BsrI ACTGG 2 cut(s) 208, 940
BssECI CCNNGG 2 cut(s) 17, 184
BssMI GATC 3 cut(s) 106, 415, 435
BssT1I CCWWGG 2 cut(s) 17, 184
Bst2UI CCWGG 1 cut(s) 922
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 1 cut(s) 474
BstAFI CTTAAG 1 cut(s) 239
BstDEI CTNAG 6 cut(s) 65, 258, 431, 565, 614, 772
BstF5I GGATG 2 cut(s) 71, 341
BstKTI GATC 3 cut(s) 109, 418, 438
BstMAI GTCTC 1 cut(s) 919
BstMBI GATC 3 cut(s) 106, 415, 435
BstMWI GCNNNNNNNGC 1 cut(s) 561
BstNI CCWGG 1 cut(s) 922
BstNSI RCATGY 1 cut(s) 932
BstSCI CCNGG 1 cut(s) 920
BstV1I GCAGC 1 cut(s) 548
BstV2I GAAGAC 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 599
BsuRI GGCC 1 cut(s) 676
BtsCI GGATG 2 cut(s) 71, 341
BtsIMutI CAGTG 1 cut(s) 201
CciI TCATGA 1 cut(s) 309
Cfr13I GGNCC 3 cut(s) 602, 674, 918
CviAII CATG 5 cut(s) 310, 328, 619, 929, 991
DdeI CTNAG 6 cut(s) 65, 258, 431, 565, 614, 772
DpnI GATC 3 cut(s) 108, 417, 437
DpnII GATC 3 cut(s) 106, 415, 435
DraIII CACNNNGTG 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 17, 184
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 602, 918
Eco53kI GAGCTC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 64
EcoO109I RGGNCCY 2 cut(s) 674, 918
EcoRII CCWGG 1 cut(s) 920
EcoT14I CCWWGG 2 cut(s) 17, 184
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 2 cut(s) 17, 184
FaeI CATG 5 cut(s) 313, 331, 622, 932, 994
FaqI GGGAC 1 cut(s) 753
FatI CATG 5 cut(s) 309, 327, 618, 928, 990
Fnu4HI GCNGC 1 cut(s) 562
FokI GGATG 2 cut(s) 58, 328
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 562
FspBI CTAG 4 cut(s) 18, 185, 272, 419
GluI GCNGC 1 cut(s) 562
GsuI CTGGAG 1 cut(s) 943
HaeIII GGCC 1 cut(s) 676
Hin1II CATG 5 cut(s) 313, 331, 622, 932, 994
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 553
HinfI GANTC 4 cut(s) 569, 751, 870, 882
HphI GGTGA 2 cut(s) 800, 919
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 4 cut(s) 113, 261, 415, 615
Hpy188III TCNNGA 8 cut(s) 129, 215, 302, 310, 465, 575, 583, 947
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4V TGCA 4 cut(s) 89, 635, 794, 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 561
HpyF3I CTNAG 6 cut(s) 65, 258, 431, 565, 614, 772
Hsp92II CATG 5 cut(s) 313, 331, 622, 932, 994
Kzo9I GATC 3 cut(s) 106, 415, 435
LmnI GCTCC 2 cut(s) 61, 188
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 1 cut(s) 781
MaeI CTAG 4 cut(s) 18, 185, 272, 419
MaeIII GTNAC 2 cut(s) 336, 587
MalI GATC 3 cut(s) 108, 417, 437
MboI GATC 3 cut(s) 106, 415, 435
MboII GAAGA 6 cut(s) 190, 408, 491, 543, 830, 836
MhlI GDGCHC 2 cut(s) 8, 66
MluCI AATT 8 cut(s) 35, 221, 380, 384, 505, 606, 695, 982
MnlI CCTC 8 cut(s) 107, 246, 355, 384, 426, 590, 621, 909
MroXI GAANNNNTTC 1 cut(s) 695
MseI TTAA 6 cut(s) 38, 240, 333, 383, 707, 912
MslI CAYNNNNRTG 1 cut(s) 597
MspCI CTTAAG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 922
MvaI CCWGG 1 cut(s) 922
MwoI GCNNNNNNNGC 1 cut(s) 561
NdeII GATC 3 cut(s) 106, 415, 435
NlaIII CATG 5 cut(s) 313, 331, 622, 932, 994
NlaIV GGNNCC 3 cut(s) 119, 190, 675
NspI RCATGY 1 cut(s) 932
PaeR7I CTCGAG 1 cut(s) 583
PagI TCATGA 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 4 cut(s) 569, 751, 870, 882
PfoI TCCNGGA 1 cut(s) 920
PkrI GCNGC 1 cut(s) 563
PpuMI RGGWCCY 1 cut(s) 918
PshBI ATTAAT 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 918
Psp6I CCWGG 1 cut(s) 920
PspGI CCWGG 1 cut(s) 920
PspN4I GGNNCC 3 cut(s) 119, 190, 675
PspPI GGNCC 3 cut(s) 602, 674, 918
PspPPI RGGWCCY 1 cut(s) 918
PsrI GAACNNNNNNTAC 2 cut(s) 641, 673
RseI CAYNNNNRTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 6 cut(s) 38, 240, 333, 383, 707, 912
SatI GCNGC 1 cut(s) 562
Sau3AI GATC 3 cut(s) 106, 415, 435
Sau96I GGNCC 3 cut(s) 602, 674, 918
ScrFI CCNGG 1 cut(s) 922
SduI GDGCHC 2 cut(s) 8, 66
SfaNI GCATC 1 cut(s) 781
Sfr274I CTCGAG 1 cut(s) 583
SinI GGWCC 2 cut(s) 602, 918
SlaI CTCGAG 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 3 cut(s) 239, 556, 583
SmoI CTYRAG 3 cut(s) 239, 556, 583
Sse9I AATT 8 cut(s) 35, 221, 380, 384, 505, 606, 695, 982
SspI AATATT 1 cut(s) 410
SspMI CTAG 4 cut(s) 18, 185, 272, 419
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 920
StyI CCWWGG 2 cut(s) 17, 184
TaaI ACNGT 1 cut(s) 814
TaqI TCGA 1 cut(s) 584
TasI AATT 8 cut(s) 35, 221, 380, 384, 505, 606, 695, 982
TfiI GAWTC 4 cut(s) 569, 751, 870, 882
Tru1I TTAA 6 cut(s) 38, 240, 333, 383, 707, 912
Tru9I TTAA 6 cut(s) 38, 240, 333, 383, 707, 912
TscAI CASTG 1 cut(s) 208
TseI GCWGC 1 cut(s) 561
TspDTI ATGAA 6 cut(s) 326, 420, 837, 849, 862, 971
TspRI CASTG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 602, 918
VspI ATTAAT 1 cut(s) 383
XapI RAATTY 1 cut(s) 505
XceI RCATGY 1 cut(s) 932
XhoI CTCGAG 1 cut(s) 583
XmaJI CCTAGG 2 cut(s) 17, 184
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 4 cut(s) 18, 185, 272, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.