Rh1CG237000

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000285
Physical Location & Seq
Reverse (-)
49459181 .. 49471877
12697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG237000.1

Sequence Viewer

Length: 1014 bp
ATGGATTTTTTGCATCCATGTACTGCTAACAGAGTAACTGAGCTTCCCTGGTTTAAAGATGAAGTTGTTATCAACTTCATTCATGGTCTTTTGGATGTAAAGCGCATTACTCAGAGCAATGCTAAGATAAGCAAGGAGGCCGGAGGAGAGTTTAATATTTTTGATGGGTCGGTGATGGCCACAACAATATTTGCCTACTCCAATACAGTCAATGATGAGAGGTCCAATGTGGCTTGCATTGAGGAAGAGAGGAAGGCCCTCCTTGAATTCAAGCAAGGCCTTCAAGATCCTATGCCTGCGCTTCATTCTTGGTTTGGCAAAGACTGCTGCAACTGGCATGGCATAGTCTGCAACAACCAAACAGACCTTGATTCTTTTCGACAATTCGTTCTCTGGCCCACTTCCGACATCGATCGAAAATCTTTCACATTTGAGGACCATGAACCTTTCTTGGAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAATCTTTCAAATTTGCAGAACTTGGACCTTTCTTGGAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTCTTGGAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGAGCCTGTACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTATTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGTACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAATTGCTGGAAATGTGGATAG

Protein Analysis

337

Amino Acids

39.16

Weight (kDa)

5.11

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 81 - 118 4.7e-12 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 281
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 8 cut(s) 266, 500, 572, 644, 716, 788, 860, 932
AfaI GTAC 3 cut(s) 22, 660, 948
AgsI TTSAA 9 cut(s) 266, 271, 284, 499, 670, 742, 814, 886, 958
AjnI CCWGG 5 cut(s) 47, 583, 727, 799, 871
AloI GAACNNNNNNTCC 6 cut(s) 447, 479, 519, 551, 591, 623
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AlwI GGATC 1 cut(s) 281
AlwNI CAGNNNCTG 6 cut(s) 584, 656, 728, 800, 872, 944
AoxI GGCC 5 cut(s) 138, 177, 255, 277, 395
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 8 cut(s) 266, 500, 572, 644, 716, 788, 860, 932
Asp700I GAANNNNTTC 7 cut(s) 494, 566, 638, 710, 782, 854, 926
AspLEI GCGC 2 cut(s) 105, 301
AsuHPI GGTGA 1 cut(s) 184
AsuII TTCGAA 6 cut(s) 570, 642, 714, 786, 858, 930
BalI TGGCCA 1 cut(s) 179
BarI GAAGNNNNNNTAC 2 cut(s) 27, 59
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 158, 169
BciT130I CCWGG 5 cut(s) 49, 585, 729, 801, 873
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 5 cut(s) 49, 585, 729, 801, 873
BmrFI CCNGG 5 cut(s) 49, 585, 729, 801, 873
BmsI GCATC 1 cut(s) 22
Bpu14I TTCGAA 6 cut(s) 570, 642, 714, 786, 858, 930
Bsa29I ATCGAT 9 cut(s) 411, 483, 555, 627, 699, 771, 843, 915, 987
BsaJI CCNNGG 5 cut(s) 47, 583, 727, 799, 871
BsaWI WCCGGW 8 cut(s) 465, 537, 609, 681, 753, 825, 897, 969
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 124
BseBI CCWGG 5 cut(s) 49, 585, 729, 801, 873
BseCI ATCGAT 9 cut(s) 411, 483, 555, 627, 699, 771, 843, 915, 987
BseDI CCNNGG 5 cut(s) 47, 583, 727, 799, 871
BseGI GGATG 2 cut(s) 13, 100
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 2 cut(s) 30, 125
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 314
Bsh1285I CGRYCG 9 cut(s) 415, 487, 559, 631, 703, 775, 847, 919, 991
BshFI GGCC 5 cut(s) 140, 179, 257, 279, 397
BshVI ATCGAT 9 cut(s) 411, 483, 555, 627, 699, 771, 843, 915, 987
BsiEI CGRYCG 9 cut(s) 415, 487, 559, 631, 703, 775, 847, 919, 991
BsiSI CCGG 9 cut(s) 141, 466, 538, 610, 682, 754, 826, 898, 970
BsnI GGCC 5 cut(s) 140, 179, 257, 279, 397
Bsp119I TTCGAA 6 cut(s) 570, 642, 714, 786, 858, 930
BspANI GGCC 5 cut(s) 140, 179, 257, 279, 397
BspCNI CTCAG 2 cut(s) 31, 124
BspDI ATCGAT 9 cut(s) 411, 483, 555, 627, 699, 771, 843, 915, 987
BspPI GGATC 1 cut(s) 281
BspT104I TTCGAA 6 cut(s) 570, 642, 714, 786, 858, 930
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 5 cut(s) 47, 583, 727, 799, 871
Bst2UI CCWGG 5 cut(s) 49, 585, 729, 801, 873
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 2 cut(s) 324, 348
BstBI TTCGAA 6 cut(s) 570, 642, 714, 786, 858, 930
BstC8I GCNNGC 2 cut(s) 235, 297
BstDEI CTNAG 3 cut(s) 39, 111, 123
BstF5I GGATG 2 cut(s) 13, 100
BstHHI GCGC 2 cut(s) 105, 301
BstMCI CGRYCG 9 cut(s) 415, 487, 559, 631, 703, 775, 847, 919, 991
BstMWI GCNNNNNNNGC 2 cut(s) 324, 348
BstNI CCWGG 5 cut(s) 49, 585, 729, 801, 873
BstSCI CCNGG 5 cut(s) 47, 583, 727, 799, 871
BstV1I GCAGC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 9 cut(s) 411, 483, 555, 627, 699, 771, 843, 915, 987
BsuRI GGCC 5 cut(s) 140, 179, 257, 279, 397
BsuTUI ATCGAT 9 cut(s) 411, 483, 555, 627, 699, 771, 843, 915, 987
BtsCI GGATG 2 cut(s) 13, 100
Cac8I GCNNGC 2 cut(s) 235, 297
CaiI CAGNNNCTG 6 cut(s) 584, 656, 728, 800, 872, 944
CfoI GCGC 2 cut(s) 105, 301
ClaI ATCGAT 9 cut(s) 411, 483, 555, 627, 699, 771, 843, 915, 987
Csp6I GTAC 3 cut(s) 21, 659, 947
CviAII CATG 4 cut(s) 18, 83, 338, 440
CviJI RGCY 8 cut(s) 43, 140, 179, 233, 257, 279, 397, 655
CviKI_1 RGCY 8 cut(s) 43, 140, 179, 233, 257, 279, 397, 655
CviQI GTAC 3 cut(s) 21, 659, 947
DdeI CTNAG 3 cut(s) 39, 111, 123
DraI TTTAAA 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco147I AGGCCT 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 5 cut(s) 47, 583, 727, 799, 871
FaeI CATG 4 cut(s) 21, 86, 341, 443
FaiI YATR 6 cut(s) 19, 84, 293, 339, 344, 441
FatI CATG 4 cut(s) 17, 82, 337, 439
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 328
GlaI GCGC 2 cut(s) 104, 300
GluI GCNGC 1 cut(s) 328
HaeIII GGCC 5 cut(s) 140, 179, 257, 279, 397
HapII CCGG 9 cut(s) 141, 466, 538, 610, 682, 754, 826, 898, 970
HhaI GCGC 2 cut(s) 105, 301
Hin1II CATG 4 cut(s) 21, 86, 341, 443
Hin6I GCGC 2 cut(s) 103, 299
HinP1I GCGC 2 cut(s) 103, 299
HinfI GANTC 1 cut(s) 371
HpaII CCGG 9 cut(s) 141, 466, 538, 610, 682, 754, 826, 898, 970
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 8 cut(s) 471, 543, 615, 687, 759, 831, 903, 975
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 8 cut(s) 471, 543, 615, 687, 759, 831, 903, 975
HpyAV CCTTC 2 cut(s) 247, 290
HpyCH4III ACNGT 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 324, 348
HpyF3I CTNAG 3 cut(s) 39, 111, 123
Hsp92II CATG 4 cut(s) 21, 86, 341, 443
HspAI GCGC 2 cut(s) 103, 299
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 5 cut(s) 257, 658, 802, 874, 946
MflI RGATCY 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 179
MluNI TGGCCA 1 cut(s) 179
MmeI TCCRAC 9 cut(s) 429, 501, 573, 645, 717, 789, 861, 933, 1005
MnlI CCTC 7 cut(s) 130, 137, 213, 235, 243, 269, 427
Mox20I TGGCCA 1 cut(s) 179
MroXI GAANNNNTTC 7 cut(s) 494, 566, 638, 710, 782, 854, 926
MscI TGGCCA 1 cut(s) 179
MseI TTAA 2 cut(s) 54, 153
Msp20I TGGCCA 1 cut(s) 179
MspI CCGG 9 cut(s) 141, 466, 538, 610, 682, 754, 826, 898, 970
MspR9I CCNGG 5 cut(s) 49, 585, 729, 801, 873
MvaI CCWGG 5 cut(s) 49, 585, 729, 801, 873
MwoI GCNNNNNNNGC 2 cut(s) 324, 348
NlaIII CATG 4 cut(s) 21, 86, 341, 443
NspV TTCGAA 6 cut(s) 570, 642, 714, 786, 858, 930
PceI AGGCCT 1 cut(s) 279
PdmI GAANNNNTTC 7 cut(s) 494, 566, 638, 710, 782, 854, 926
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 1 cut(s) 329
Ple19I CGATCG 9 cut(s) 415, 487, 559, 631, 703, 775, 847, 919, 991
Psp6I CCWGG 5 cut(s) 47, 583, 727, 799, 871
PspGI CCWGG 5 cut(s) 47, 583, 727, 799, 871
PstNI CAGNNNCTG 6 cut(s) 584, 656, 728, 800, 872, 944
PsuI RGATCY 1 cut(s) 286
PvuI CGATCG 9 cut(s) 415, 487, 559, 631, 703, 775, 847, 919, 991
RsaI GTAC 3 cut(s) 22, 660, 948
RsaNI GTAC 3 cut(s) 21, 659, 947
SaqAI TTAA 2 cut(s) 54, 153
SatI GCNGC 1 cut(s) 328
ScrFI CCNGG 5 cut(s) 49, 585, 729, 801, 873
SfaNI GCATC 1 cut(s) 22
SfuI TTCGAA 6 cut(s) 570, 642, 714, 786, 858, 930
SseBI AGGCCT 1 cut(s) 279
SspI AATATT 2 cut(s) 157, 189
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 5 cut(s) 47, 583, 727, 799, 871
TaaI ACNGT 1 cut(s) 208
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 2 cut(s) 54, 153
Tru9I TTAA 2 cut(s) 54, 153
TseI GCWGC 1 cut(s) 327
TspDTI ATGAA 5 cut(s) 67, 71, 75, 293, 456
XapI RAATTY 8 cut(s) 266, 500, 572, 644, 716, 788, 860, 932
XmnI GAANNNNTTC 7 cut(s) 494, 566, 638, 710, 782, 854, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.