Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015525.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

816 .. 1502

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015525.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggtaacaggagatggcttgcgtagcgactggatgatgcacttctcgtcgcctgctgatcctatgcatatcgacttaaatgtgaaaggagtagtatatgaatatattgatgatatcataggactcattaaaaagtttgacctgtcaagtaataatctatcgggagaaataccagatgaggtgaaaaatctcatggctttgggtagcttgaacttatcccataaccatttgacaggaaagataccagagggtaccggaagcttacataagttagaagcacttgacctctctagtaaccatctttggggtttaattccttcaagcatgacctctatgacttcactaagcaaattgaatttgtcattcaacaacttctctgggccaatcccatcagccaaccaattcctcaccttcaatgacccaacctcatttgaaggaaactcaggactttgcggacctccattgccaacccaatgcagttcagttaatgatccagctgtgaaggttgacgaagatgaagaagataagtatggaaaattatggttctatgcaagcacatcattggggttcattgtaggattttgggttgcttttggaagtttggtgataaagaggtcatggagacatgcttacttccagtttcttgacaatatgaaagacaagctttgcttctgtttttggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

228

Amino Acids

25.36

Weight (kDa)

5.26

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	2 cut(s)	53, 485
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	6 cut(s)	211, 321, 355, 367, 415, 434
AluBI	AGCT	4 cut(s)	207, 261, 497, 664
AluI	AGCT	4 cut(s)	207, 261, 497, 664
Alw26I	GTCTC	1 cut(s)	616
AlwI	GGATC	2 cut(s)	53, 485
AoxI	GGCC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	355
Asp718I	GGTACC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	380, 455
AsuHPI	GGTGA	3 cut(s)	193, 400, 616
AvaII	GGWCC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	251
BccI	CCATC	3 cut(s)	8, 306, 397
BcoDI	GTCTC	1 cut(s)	616
BfaI	CTAG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	380, 455
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	35, 637
Bse3DI	GCAATG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	35, 637
BshFI	GGCC	1 cut(s)	382
BshNI	GGYRCC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	58, 490
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	455
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	53, 485
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	35, 637
BssMI	GATC	2 cut(s)	58, 490
BstC8I	GCNNGC	3 cut(s)	20, 54, 553
BstDEI	CTNAG	2 cut(s)	344, 442
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	61, 493
BstMAI	GTCTC	1 cut(s)	616
BstMBI	GATC	2 cut(s)	58, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	20, 54, 553
Cfr13I	GGNCC	2 cut(s)	380, 455
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	4 cut(s)	193, 325, 618, 626
CviJI	RGCY	8 cut(s)	18, 197, 207, 261, 382, 395, 497, 664
CviKI_1	RGCY	8 cut(s)	18, 197, 207, 261, 382, 395, 497, 664
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	2 cut(s)	344, 442
DpnI	GATC	2 cut(s)	60, 492
DpnII	GATC	2 cut(s)	58, 490
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	455
EcoRV	GATATC	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	69
FaeI	CATG	4 cut(s)	196, 328, 621, 629
FalI	AAGNNNNNCTT	4 cut(s)	648, 680, 653, 685
FatI	CATG	4 cut(s)	192, 324, 617, 625
FokI	GGATG	1 cut(s)	46
FspBI	CTAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	4 cut(s)	196, 328, 621, 629
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	2 cut(s)	259, 662
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	3 cut(s)	193, 400, 616
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188III	TCNNGA	3 cut(s)	162, 444, 644
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	4 cut(s)	327, 421, 428, 496
HpyCH4V	TGCA	4 cut(s)	40, 67, 477, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	2 cut(s)	344, 442
Hsp92II	CATG	4 cut(s)	196, 328, 621, 629
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	58, 490
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	4, 293
MalI	GATC	2 cut(s)	60, 492
MboI	GATC	2 cut(s)	58, 490
MboII	GAAGA	3 cut(s)	524, 530, 533
MluCI	AATT	5 cut(s)	312, 350, 355, 401, 536
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	8 cut(s)	172, 241, 296, 340, 416, 436, 468, 606
Mph1103I	ATGCAT	1 cut(s)	69
MseI	TTAA	4 cut(s)	77, 129, 311, 486
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	2 cut(s)	58, 490
NlaIII	CATG	4 cut(s)	196, 328, 621, 629
NlaIV	GGNNCC	1 cut(s)	253
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	1 cut(s)	629
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	380, 455
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	4 cut(s)	77, 129, 311, 486
Sau3AI	GATC	2 cut(s)	58, 490
Sau96I	GGNCC	2 cut(s)	380, 455
SchI	GAGTC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	455
Sse9I	AATT	5 cut(s)	312, 350, 355, 401, 536
SsiI	CCGC	1 cut(s)	453
SspMI	CTAG	1 cut(s)	291
TaqI	TCGA	1 cut(s)	72
TasI	AATT	5 cut(s)	312, 350, 355, 401, 536
Tru1I	TTAA	4 cut(s)	77, 129, 311, 486
Tru9I	TTAA	4 cut(s)	77, 129, 311, 486
TspDTI	ATGAA	4 cut(s)	114, 531, 559, 668
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.