Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

17642397 .. 17642805

Gene Structure 409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47885.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAACCACTCATGCTTGTATGAAGCCATATCCAGTCCAAATACAACTCCAGGTGCAAAGCCTAAACCTGCTGCTACCCAACTCAGTCTCTCAAATATTTTTTTGGGATTCAATAATAACTTCACCGGAGAGATACCTCAGTCAATATGTGGACTCAACTCTCTATACGCCCTAGATCTATTAGACAACAATCTCCACGGCTCAATTCCTCAGTGTTTAGAGACTCTGATGATGAGTTCTCTTTTGTATCGTCCCATGACTTTAGCCTCTCACAAATTTAGTTGGCATCTGGATCATATGATACTGCGGATATCAACACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

107

Amino Acids

11.83

Weight (kDa)

6.48

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	92, 215
AlwI	GGATC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	115
BaeI	ACNNNNGTAYC	2 cut(s)	125, 158
BbvI	GCAGC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	92, 215
BfaI	CTAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	76
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	295
BpmI	CTGGAG	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	196
BseMII	CTCAG	3 cut(s)	97, 152, 224
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	92, 215
BsmFI	GGGAC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	175, 292
BspACI	CCGC	1 cut(s)	307
BspCNI	CTCAG	3 cut(s)	96, 151, 223
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	175, 292
Bst2UI	CCWGG	1 cut(s)	51
BstDEI	CTNAG	3 cut(s)	83, 138, 210
BstDSI	CCRYGG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	178, 295
BstMAI	GTCTC	2 cut(s)	92, 215
BstMBI	GATC	2 cut(s)	175, 292
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	218
BveI	ACCTGC	1 cut(s)	76
CviAII	CATG	2 cut(s)	12, 256
CviJI	RGCY	4 cut(s)	26, 61, 201, 266
CviKI_1	RGCY	4 cut(s)	26, 61, 201, 266
DdeI	CTNAG	3 cut(s)	83, 138, 210
DpnI	GATC	2 cut(s)	177, 294
DpnII	GATC	2 cut(s)	175, 292
Eco32I	GATATC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	312
FaeI	CATG	2 cut(s)	15, 259
FaiI	YATR	8 cut(s)	13, 21, 29, 148, 166, 257, 297, 299
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	2 cut(s)	11, 255
FauNDI	CATATG	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	33
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	15, 259
HinfI	GANTC	3 cut(s)	108, 153, 223
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	83, 138, 210
Hsp92II	CATG	2 cut(s)	15, 259
Kzo9I	GATC	2 cut(s)	175, 292
LpnPI	CCDG	6 cut(s)	36, 46, 63, 81, 139, 275
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	173
MalI	GATC	2 cut(s)	177, 294
MboI	GATC	2 cut(s)	175, 292
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	2 cut(s)	204, 275
MlyI	GAGTC	2 cut(s)	147, 217
MnlI	CCTC	3 cut(s)	147, 219, 277
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	2 cut(s)	175, 292
NlaIII	CATG	2 cut(s)	15, 259
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	147, 217
PpsI	GAGTC	2 cut(s)	147, 217
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	175
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	175, 292
SchI	GAGTC	2 cut(s)	147, 217
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	3 cut(s)	55, 70, 139
SfaNI	GCATC	1 cut(s)	295
Sse9I	AATT	2 cut(s)	204, 275
SsiI	CCGC	1 cut(s)	307
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	49
TasI	AATT	2 cut(s)	204, 275
TfiI	GAWTC	1 cut(s)	108
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	17, 36
TspRI	CASTG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.