Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

1562736 .. 1566687

Gene Structure 3952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0024600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGGTTGCTGTAGCAGCAAGACCAAACCCAATCCAGGTCCTAATAATGGGTATGTCTCCTCGTCCATACCCATCTCTCATCACCACCCACAACAGCAACCCTTGTCCGTCTCAACCCAGCAACCTCACAAAGTTTCAGCTCCTCCAACCCATAACCCACCTCCACCACCCCAACCCCAATACCAACCACCACCACCAAAGCCACACCCACAGCCAGTCAAGCCAGCAGTGCCGCCAAACAGCATTCTTGAGAAGCCCTTTGATGACATTAAGCAGTACTACACTCTGGGGAAAGAACTGGGCAGAGGCCAATTTGGGATCACGTACTTGTGCACAGAGAAGTCTACGGGTGACACTTATGCCTGTAAGTCAATCTTGAAGCGCAAACTGGTGAGTAAAAGTGACAGGGATGATATCAAGAGGGAGATACAGATCATGCAGCACATGTCTGGGCAGCGCAACATTGTGGACATCAAGGGGGCTTATGAGGACAGGTACTCTGTGCATTTGGTGATGGAGCTCTGTGCCGGAGGGGAGCTTTTCGATAGGATCATAGCGCAGGGAGTGTATTCGGAGAGAGCTGCCGCCGCGATTGTGAGGGACATTGTGAATGTTGTGCACAGTTGTCATGTAATGGCTGTGATGCACCGTGATCTCAAGCCCGAGAATTTCTTGCTGTCTAGTAAGGGGGAAGGGGCAATGCTCAAGGTTACGGATTTCGGGCTGTCTGTTTTTATTGAGGAAGGGAAGGTATACCGAGATATAGTAGGCAGTGCTTACTATGTTGCTCCTGAAGTGTTACGGCGTAGTTATGGAAAGGAGATAGATATTTGGAGTGCTGGAGTAATTCTGTATATTCTACTTAGTGGAGTACCTCCATTTTGGGCTGAGACTGAGAGGGGCATCTTTAATGCAATATTGGAAGGTGTAGTTGACTTTGAAAGTCAACCATGGCCGTCAATATCAGACGGTGCCAAGGACCTAGTTAGAAAGATGCTGACACAGGACCCAAAAAAGAGAATTACTTCACTGAAAGTTCTTGAGCATCCCTGGCTCAGAGTAGGTGGAGAAGCATCAGACAAGCCAATAGATAGTGCAGTTCTCTCTAGAATGAAGCAGTTGAGAGCAATGAATAAGCTTAAGAAGCTTGCCTTGCAGGTAATAGCGGAAAATCTATCTGAAGAAGAAATTAAAGGTCTTAAGGCAATGTTCACCAGTATGGACACCGACAAAAGTGGTACAATAACCTACGAAGAACTGAAGACAGGATTAGCTCGTATTGGGTCACGGCTATCAGAAACCGAAGTCAGGCAACTTATGGATGCTGCTGACGTTGATGGAAATGGATCAATTGACTATATTGAATTTATATCTGCTACTATGCATAGACAAAGACTAGAGAGAGATGAACACCTGTACAAAGCATTTCAGTATTTTGACAAGGATAGCAGTGGGTATATAACAAGAGATGAATTAGAGGCTGCTATGAAGGAGCATGGAATGGGTGATGAAAACACTATCAAAGAAATAATTTCCGAGGTTGATGCAGATAATGACGGGAGGATCAACTACACGGAATTCTGCACAATGATGAGAAGTGGAAATCAACCCACAAGGCAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

541

Amino Acids

60.57

Weight (kDa)

6.34

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	94 - 352	2.9e-75	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 345	1.1e-25	Protein tyrosine and serine/threonine kinase
EF-hand_7	PF13499	399 - 460	3.9e-12	EF-hand domain pair
EF-hand_1	PF00036	400 - 426	2.8e-06	EF hand domain
EF-hand_8	PF13833	412 - 460	2.9e-06	EF-hand domain pair
EF-hand_7	PF13499	470 - 532	1.8e-16	EF-hand domain pair
EF-hand_1	PF00036	472 - 498	1.1e-06	EF hand domain
EF-hand_6	PF13405	472 - 500	3.3e-07	EF-hand domain
EF-hand_8	PF13833	483 - 532	1.7e-08	EF-hand domain pair
EF-hand_1	PF00036	507 - 533	5.8e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1147
AccB1I	GGYRCC	1 cut(s)	971
AccI	GTMKAC	2 cut(s)	344, 753
AccII	CGCG	1 cut(s)	590
AciI	CCGC	4 cut(s)	233, 585, 588, 1166
AclWI	GGATC	4 cut(s)	326, 557, 1354, 1571
AcoI	YGGCCR	1 cut(s)	953
AcsI	RAATTY	3 cut(s)	667, 1364, 1577
AcuI	CTGAAG	3 cut(s)	813, 1200, 1280
AfaI	GTAC	6 cut(s)	278, 326, 497, 873, 1240, 1418
AfiI	CCNNNNNNNGG	3 cut(s)	35, 47, 1308
AflII	CTTAAG	2 cut(s)	1139, 1199
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	379, 941, 1364
AjnI	CCWGG	2 cut(s)	34, 1049
AluBI	AGCT	7 cut(s)	140, 520, 538, 581, 1138, 1147, 1274
AluI	AGCT	7 cut(s)	140, 520, 538, 581, 1138, 1147, 1274
Alw21I	GWGCWC	3 cut(s)	335, 522, 621
Alw26I	GTCTC	3 cut(s)	61, 115, 884
Alw44I	GTGCAC	2 cut(s)	331, 617
AlwI	GGATC	4 cut(s)	326, 557, 1354, 1571
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	2 cut(s)	307, 953
ApaLI	GTGCAC	2 cut(s)	331, 617
ApeKI	GCWGC	6 cut(s)	15, 439, 454, 581, 1325, 1481
ApoI	RAATTY	3 cut(s)	667, 1364, 1577
Asp700I	GAANNNNTTC	1 cut(s)	1024
AspLEI	GCGC	3 cut(s)	384, 459, 559
AspS9I	GGNCC	3 cut(s)	38, 979, 1006
AsuHPI	GGTGA	6 cut(s)	74, 362, 403, 523, 1204, 1517
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	3 cut(s)	38, 979, 1006
BaeGI	GKGCMC	2 cut(s)	335, 621
BanI	GGYRCC	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	1268
Bbv12I	GWGCWC	3 cut(s)	335, 522, 621
BbvI	GCAGC	6 cut(s)	27, 451, 466, 568, 1312, 1468
BccI	CCATC	3 cut(s)	80, 508, 1331
BceAI	ACGGC	3 cut(s)	818, 940, 1304
BcgI	CGANNNNNNTGC	2 cut(s)	1526, 1560
BciT130I	CCWGG	2 cut(s)	36, 1051
BcoDI	GTCTC	3 cut(s)	61, 115, 884
BfaI	CTAG	4 cut(s)	681, 983, 1107, 1397
BfmI	CTRYAG	1 cut(s)	10
BfrI	CTTAAG	2 cut(s)	1139, 1199
BfuAI	ACCTGC	1 cut(s)	1147
BisI	GCNGC	9 cut(s)	16, 233, 440, 455, 582, 585, 588, 1326, 1482
BlsI	GCNGC	9 cut(s)	17, 234, 441, 456, 583, 586, 589, 1327, 1483
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	36, 1051
Bme18I	GGWCC	3 cut(s)	38, 979, 1006
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	3 cut(s)	38, 979, 1006
BmiI	GGNNCC	2 cut(s)	973, 1008
BmrFI	CCNGG	2 cut(s)	36, 1051
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	7 cut(s)	633, 912, 984, 1054, 1082, 1312, 1534
BmuI	ACTGGG	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	1268
BpmI	CTGGAG	1 cut(s)	861
BpuEI	CTTGAG	4 cut(s)	269, 641, 689, 1061
BsaAI	YACGTR	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	431
BsaJI	CCNNGG	4 cut(s)	950, 975, 1049, 1536
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 47, 1308
Bse1I	ACTGG	4 cut(s)	215, 303, 393, 1215
Bse3DI	GCAATG	3 cut(s)	705, 1134, 1212
Bse8I	GATNNNNATC	1 cut(s)	431
BseBI	CCWGG	2 cut(s)	36, 1051
BseDI	CCNNGG	4 cut(s)	950, 975, 1049, 1536
BseGI	GGATG	3 cut(s)	415, 1045, 1327
BseJI	GATNNNNATC	1 cut(s)	431
BseLI	CCNNNNNNNGG	3 cut(s)	35, 47, 1308
BseMI	GCAATG	3 cut(s)	705, 1134, 1212
BseMII	CTCAG	3 cut(s)	879, 885, 1069
BseNI	ACTGG	4 cut(s)	215, 303, 393, 1215
BseRI	GAGGAG	2 cut(s)	49, 132
BseSI	GKGCMC	2 cut(s)	335, 621
BseXI	GCAGC	6 cut(s)	27, 451, 466, 568, 1312, 1468
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	2 cut(s)	1116, 1567
Bsh1236I	CGCG	1 cut(s)	590
BshFI	GGCC	2 cut(s)	309, 955
BshNI	GGYRCC	1 cut(s)	971
BsiHKAI	GWGCWC	3 cut(s)	335, 522, 621
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	3 cut(s)	35, 47, 1308
BsmAI	GTCTC	3 cut(s)	61, 115, 884
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	309, 955
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	3 cut(s)	335, 522, 621
Bsp1407I	TGTACA	1 cut(s)	1416
Bsp143I	GATC	6 cut(s)	318, 432, 549, 652, 1346, 1563
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	4 cut(s)	233, 585, 588, 1166
BspANI	GGCC	2 cut(s)	309, 955
BspCNI	CTCAG	3 cut(s)	880, 886, 1068
BspFNI	CGCG	1 cut(s)	590
BspLI	GGNNCC	2 cut(s)	973, 1008
BspMI	ACCTGC	1 cut(s)	1147
BspPI	GGATC	4 cut(s)	326, 557, 1354, 1571
BspT107I	GGYRCC	1 cut(s)	971
BspTI	CTTAAG	2 cut(s)	1139, 1199
BsrDI	GCAATG	3 cut(s)	705, 1134, 1212
BsrGI	TGTACA	1 cut(s)	1416
BsrI	ACTGG	4 cut(s)	215, 303, 393, 1215
BssECI	CCNNGG	4 cut(s)	950, 975, 1049, 1536
BssMI	GATC	6 cut(s)	318, 432, 549, 652, 1346, 1563
BssNAI	GTATAC	1 cut(s)	754
BssT1I	CCWWGG	2 cut(s)	950, 975
Bst1107I	GTATAC	1 cut(s)	754
Bst2UI	CCWGG	2 cut(s)	36, 1051
Bst4CI	ACNGT	3 cut(s)	623, 650, 971
BstAFI	CTTAAG	2 cut(s)	1139, 1199
BstAUI	TGTACA	1 cut(s)	1416
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	225, 1149
BstDEI	CTNAG	4 cut(s)	863, 888, 894, 1055
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	3 cut(s)	415, 1045, 1327
BstFNI	CGCG	1 cut(s)	590
BstHHI	GCGC	3 cut(s)	384, 459, 559
BstKTI	GATC	6 cut(s)	321, 435, 552, 655, 1349, 1566
BstMAI	GTCTC	3 cut(s)	61, 115, 884
BstMBI	GATC	6 cut(s)	318, 432, 549, 652, 1346, 1563
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 220, 229, 587, 1051, 1144, 1153
BstNI	CCWGG	2 cut(s)	36, 1051
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	34, 1049
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	2 cut(s)	335, 621
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	6 cut(s)	27, 451, 466, 568, 1312, 1468
BstV2I	GAAGAC	1 cut(s)	1268
BstZ17I	GTATAC	1 cut(s)	754
BsuRI	GGCC	2 cut(s)	309, 955
BtgI	CCRYGG	1 cut(s)	950
BtsCI	GGATG	3 cut(s)	415, 1045, 1327
BtsI	GCAGTG	3 cut(s)	234, 778, 1456
BtsIMutI	CAGTG	4 cut(s)	234, 778, 1028, 1456
BveI	ACCTGC	1 cut(s)	1147
Cac8I	GCNNGC	2 cut(s)	225, 1149
CfoI	GCGC	3 cut(s)	384, 459, 559
Cfr13I	GGNCC	3 cut(s)	38, 979, 1006
Csp6I	GTAC	6 cut(s)	277, 325, 496, 872, 1239, 1417
CviAII	CATG	5 cut(s)	436, 445, 629, 951, 1496
CviQI	GTAC	6 cut(s)	277, 325, 496, 872, 1239, 1417
DdeI	CTNAG	4 cut(s)	863, 888, 894, 1055
DpnI	GATC	6 cut(s)	320, 434, 551, 654, 1348, 1565
DpnII	GATC	6 cut(s)	318, 432, 549, 652, 1346, 1563
EaeI	YGGCCR	1 cut(s)	953
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	950, 975
Eco24I	GRGCYC	1 cut(s)	522
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	3 cut(s)	38, 979, 1006
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	3 cut(s)	813, 1200, 1280
Eco88I	CYCGRG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	520
EcoO109I	RGGNCCY	3 cut(s)	38, 979, 1006
EcoRI	GAATTC	1 cut(s)	1577
EcoRII	CCWGG	2 cut(s)	34, 1049
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	950, 975
EcoT22I	ATGCAT	1 cut(s)	1386
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	950, 975
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	5 cut(s)	439, 448, 632, 954, 1499
FalI	AAGNNNNNCTT	5 cut(s)	359, 391, 1136, 1168, 1606
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	5 cut(s)	435, 444, 628, 950, 1495
FblI	GTMKAC	2 cut(s)	344, 753
Fnu4HI	GCNGC	9 cut(s)	16, 233, 440, 455, 582, 585, 588, 1326, 1482
FokI	GGATG	3 cut(s)	422, 1032, 1334
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	9 cut(s)	16, 233, 440, 455, 582, 585, 588, 1326, 1482
FspBI	CTAG	4 cut(s)	681, 983, 1107, 1397
GlaI	GCGC	3 cut(s)	383, 458, 558
GluI	GCNGC	9 cut(s)	16, 233, 440, 455, 582, 585, 588, 1326, 1482
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	2 cut(s)	309, 955
HapII	CCGG	1 cut(s)	528
HhaI	GCGC	3 cut(s)	384, 459, 559
Hin1II	CATG	5 cut(s)	439, 448, 632, 954, 1499
Hin6I	GCGC	3 cut(s)	382, 457, 557
HinP1I	GCGC	3 cut(s)	382, 457, 557
HincII	GTYRAC	2 cut(s)	934, 947
HindII	GTYRAC	2 cut(s)	934, 947
HindIII	AAGCTT	2 cut(s)	1136, 1145
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	6 cut(s)	74, 362, 403, 523, 1204, 1517
Hpy166II	GTNNAC	8 cut(s)	333, 345, 469, 619, 754, 934, 947, 1212
Hpy188I	TCNGA	7 cut(s)	574, 967, 1058, 1078, 1180, 1297, 1537
Hpy188III	TCNNGA	7 cut(s)	248, 376, 418, 791, 1040, 1107, 1623
Hpy8I	GTNNAC	8 cut(s)	333, 345, 469, 619, 754, 934, 947, 1212
HpyAV	CCTTC	5 cut(s)	686, 737, 742, 917, 1483
HpyCH4III	ACNGT	3 cut(s)	623, 650, 971
HpyCH4IV	ACGT	2 cut(s)	323, 1332
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 220, 229, 587, 1051, 1144, 1153
HpyF3I	CTNAG	4 cut(s)	863, 888, 894, 1055
HpySE526I	ACGT	2 cut(s)	323, 1332
Hsp92II	CATG	5 cut(s)	439, 448, 632, 954, 1499
HspAI	GCGC	3 cut(s)	382, 457, 557
Kzo9I	GATC	6 cut(s)	318, 432, 549, 652, 1346, 1563
LmnI	GCTCC	5 cut(s)	145, 517, 535, 793, 1492
Lsp1109I	GCAGC	6 cut(s)	27, 451, 466, 568, 1312, 1468
LweI	GCATC	7 cut(s)	633, 912, 984, 1054, 1082, 1312, 1534
MaeI	CTAG	4 cut(s)	681, 983, 1107, 1397
MaeII	ACGT	2 cut(s)	323, 1332
MaeIII	GTNAC	5 cut(s)	350, 401, 709, 798, 1284
MalI	GATC	6 cut(s)	320, 434, 551, 654, 1348, 1565
MboI	GATC	6 cut(s)	318, 432, 549, 652, 1346, 1563
MboII	GAAGA	4 cut(s)	1193, 1196, 1265, 1273
MfeI	CAATTG	1 cut(s)	1350
MhlI	GDGCHC	3 cut(s)	335, 522, 621
MmeI	TCCRAC	1 cut(s)	170
Mph1103I	ATGCAT	1 cut(s)	1386
MroXI	GAANNNNTTC	1 cut(s)	1024
MseI	TTAA	5 cut(s)	270, 909, 1140, 1191, 1200
MslI	CAYNNNNRTG	2 cut(s)	1217, 1589
MspCI	CTTAAG	2 cut(s)	1139, 1199
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	2 cut(s)	36, 1051
MunI	CAATTG	1 cut(s)	1350
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	2 cut(s)	36, 1051
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	7 cut(s)	15, 220, 229, 587, 1051, 1144, 1153
NcoI	CCATGG	1 cut(s)	950
NdeII	GATC	6 cut(s)	318, 432, 549, 652, 1346, 1563
NlaIII	CATG	5 cut(s)	439, 448, 632, 954, 1499
NlaIV	GGNNCC	2 cut(s)	973, 1008
NmuCI	GTSAC	3 cut(s)	350, 401, 1284
NsiI	ATGCAT	1 cut(s)	1386
NspI	RCATGY	1 cut(s)	448
PciI	ACATGT	1 cut(s)	444
PctI	GAATGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	1024
PkrI	GCNGC	9 cut(s)	17, 234, 441, 456, 583, 586, 589, 1327, 1483
Ppu21I	YACGTR	1 cut(s)	324
PpuMI	RGGWCCY	3 cut(s)	38, 979, 1006
PscI	ACATGT	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	522
Psp5II	RGGWCCY	3 cut(s)	38, 979, 1006
Psp6I	CCWGG	2 cut(s)	34, 1049
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	34, 1049
PspN4I	GGNNCC	2 cut(s)	973, 1008
PspPI	GGNCC	3 cut(s)	38, 979, 1006
PspPPI	RGGWCCY	3 cut(s)	38, 979, 1006
RsaI	GTAC	6 cut(s)	278, 326, 497, 873, 1240, 1418
RsaNI	GTAC	6 cut(s)	277, 325, 496, 872, 1239, 1417
RseI	CAYNNNNRTG	2 cut(s)	1217, 1589
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	5 cut(s)	270, 909, 1140, 1191, 1200
SatI	GCNGC	9 cut(s)	16, 233, 440, 455, 582, 585, 588, 1326, 1482
Sau3AI	GATC	6 cut(s)	318, 432, 549, 652, 1346, 1563
Sau96I	GGNCC	3 cut(s)	38, 979, 1006
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	36, 1051
SduI	GDGCHC	3 cut(s)	335, 522, 621
SfaNI	GCATC	7 cut(s)	633, 912, 984, 1054, 1082, 1312, 1534
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	3 cut(s)	38, 979, 1006
SmiMI	CAYNNNNRTG	2 cut(s)	1217, 1589
SmlI	CTYRAG	6 cut(s)	248, 656, 704, 1040, 1139, 1199
SmoI	CTYRAG	6 cut(s)	248, 656, 704, 1040, 1139, 1199
SsiI	CCGC	4 cut(s)	233, 585, 588, 1166
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	4 cut(s)	681, 983, 1107, 1397
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	34, 1049
StyI	CCWWGG	2 cut(s)	950, 975
TaaI	ACNGT	3 cut(s)	623, 650, 971
TaiI	ACGT	2 cut(s)	326, 1335
TaqI	TCGA	1 cut(s)	543
TatI	WGTACW	2 cut(s)	276, 1416
TauI	GCSGC	3 cut(s)	235, 587, 590
Tru1I	TTAA	5 cut(s)	270, 909, 1140, 1191, 1200
Tru9I	TTAA	5 cut(s)	270, 909, 1140, 1191, 1200
TscAI	CASTG	4 cut(s)	234, 778, 1035, 1456
TseFI	GTSAC	3 cut(s)	350, 401, 1284
TseI	GCWGC	6 cut(s)	15, 439, 454, 581, 1325, 1481
Tsp45I	GTSAC	3 cut(s)	350, 401, 1284
TspDTI	ATGAA	6 cut(s)	1127, 1145, 1422, 1485, 1502, 1524
TspGWI	ACGGA	3 cut(s)	97, 728, 1589
TspRI	CASTG	4 cut(s)	234, 778, 1035, 1456
Vha464I	CTTAAG	2 cut(s)	1139, 1199
VneI	GTGCAC	2 cut(s)	331, 617
VpaK11BI	GGWCC	3 cut(s)	38, 979, 1006
XapI	RAATTY	3 cut(s)	667, 1364, 1577
XbaI	TCTAGA	1 cut(s)	1106
XceI	RCATGY	1 cut(s)	448
XmiI	GTMKAC	2 cut(s)	344, 753
XmnI	GAANNNNTTC	1 cut(s)	1024
XspI	CTAG	4 cut(s)	681, 983, 1107, 1397
ZrmI	AGTACT	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	1386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.