Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

46698394 .. 46699539

Gene Structure 1146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCAAAGTTGGAGTTTCTTGATCTCTCAAGGAATTATTTCTCTGGAAATATTCCTAGGGATTGGACAGGTTTGCTAGATTTGAAGGTCATAGACTTTTCAGATAACAACCTATCTGGTGAAATCCCAAGCTCCATGTGCTCCCAACTACCATCACTCAAATGGTTGAGATTAAGCAACAACAATCTTTCTGGGAATCTTGAGTCATCTTTGCAAACTTGCAGAAATCTCTCTGCACTTGATCTAACAGGAAACAACTTTTTCGGCACCATACCAGATTGCATTGGAGAAAACCTTCATACATTGTCTTATTTAATTCTAAAAGCCAACAAGTTCACAGGAAATATTCCTCATCAATTATGTGATCTCTCCTCTCTTCAGGCTTTAGACCTTTCCCAAAATAATATATCTGGCTCCATTCCTGCATGTCTTGGTCGTTTGAAACAAATGACAACAGGAGATGGCTTCCCTAGGAACTGGATTAGGAACTTCACGGACTCTGAGGGTTATTCTGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATGTTGATGATATCATAGGACTCATTAAAAAGTTTGACCTGTCAAGTAATAATCTATCGGGAGAAATACCAGAAGAGGTGAAAAATCTCATGGCTTTGGATAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAGGCTTACATAAGTTAGAAGCACTTGACCTCTCTAGTAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTGCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTATGGGCCAATCCCATCAGCCAACCAATTCGCCACCTTCGATTCAACCTCATTTGAAGGAAACTCCAGGCTTTGTGGACCTCCGTTGCCAACCCTATGCAGCTCAGCGTCCCCTAATGATCCAGCTGTGAAGGTTGAGGAAGATAAAGAAGATAAGTATGGAAAATTATGGTTCTATGCAAGCATATCATTGGGGTTCATTGTAGGATTTTGGGTTGTTTTTGGAAGTTTGGTGATAAAGAGGTCATGGAGACATGCTTACTTCCAGTTTCTTGACAATATGAAAGACAAGCTTTGCTTCTGTTTTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

381

Amino Acids

42.44

Weight (kDa)

5.4

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	3 - 63	6.6e-08	Leucine rich repeat
LRR_4	PF12799	51 - 92	9.7e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	69 - 150	4.8e-06	Leucine-rich repeat region
LRR_8	PF13855	75 - 136	1e-08	Leucine rich repeat
LRR_14	PF23598	206 - 272	1.3e-06	Leucine-rich repeat region
LRR_8	PF13855	238 - 277	1e-05	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AclWI	GGATC	2 cut(s)	509, 944
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	760
AgsI	TTSAA	8 cut(s)	85, 442, 667, 777, 811, 823, 876, 887
AjnI	CCWGG	1 cut(s)	896
AluBI	AGCT	5 cut(s)	132, 663, 933, 956, 1123
AluI	AGCT	5 cut(s)	132, 663, 933, 956, 1123
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	1075
AlwI	GGATC	2 cut(s)	509, 944
AoxI	GGCC	1 cut(s)	836
ApeKI	GCWGC	1 cut(s)	930
ApoI	RAATTY	1 cut(s)	811
Asp700I	GAANNNNTTC	2 cut(s)	38, 294
AspA2I	CCTAGG	2 cut(s)	56, 470
AspS9I	GGNCC	2 cut(s)	836, 908
AsuHPI	GGTGA	3 cut(s)	131, 649, 1075
AvaII	GGWCC	1 cut(s)	908
AvrII	CCTAGG	2 cut(s)	56, 470
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	942
BccI	CCATC	4 cut(s)	160, 455, 762, 853
BciT130I	CCWGG	1 cut(s)	898
BcoDI	GTCTC	1 cut(s)	1075
BfaI	CTAG	4 cut(s)	57, 77, 471, 747
BisI	GCNGC	1 cut(s)	931
BlnI	CCTAGG	2 cut(s)	56, 470
BlpI	GCTNAGC	1 cut(s)	934
BlsI	GCNGC	1 cut(s)	932
Bme1390I	CCNGG	1 cut(s)	898
Bme18I	GGWCC	1 cut(s)	908
BmgT120I	GGNCC	2 cut(s)	836, 908
BmiI	GGNNCC	2 cut(s)	268, 415
BmrFI	CCNGG	1 cut(s)	898
BpmI	CTGGAG	1 cut(s)	880
Bpu1102I	GCTNAGC	1 cut(s)	934
BpuEI	CTTGAG	2 cut(s)	13, 221
BsaJI	CCNNGG	2 cut(s)	56, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse1I	ACTGG	2 cut(s)	482, 1096
BseBI	CCWGG	1 cut(s)	898
BseDI	CCNNGG	2 cut(s)	56, 470
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMII	CTCAG	2 cut(s)	492, 948
BseNI	ACTGG	2 cut(s)	482, 1096
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	942
BsgI	GTGCAG	2 cut(s)	219, 780
BshFI	GGCC	1 cut(s)	838
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	925
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	1 cut(s)	1075
BsmFI	GGGAC	1 cut(s)	925
BsnI	GGCC	1 cut(s)	838
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	5 cut(s)	22, 241, 364, 514, 949
Bsp1720I	GCTNAGC	1 cut(s)	934
BspANI	GGCC	1 cut(s)	838
BspCNI	CTCAG	2 cut(s)	493, 947
BspLI	GGNNCC	2 cut(s)	268, 415
BspPI	GGATC	2 cut(s)	509, 944
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	482, 1096
BssECI	CCNNGG	2 cut(s)	56, 470
BssMI	GATC	5 cut(s)	22, 241, 364, 514, 949
BssT1I	CCWWGG	2 cut(s)	56, 470
Bst2UI	CCWGG	1 cut(s)	898
Bst6I	CTCTTC	2 cut(s)	381, 627
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	3 cut(s)	501, 800, 934
BstKTI	GATC	5 cut(s)	25, 244, 367, 517, 952
BstMAI	GTCTC	1 cut(s)	1075
BstMBI	GATC	5 cut(s)	22, 241, 364, 514, 949
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	898
BstNSI	RCATGY	2 cut(s)	429, 1088
BstSCI	CCNGG	1 cut(s)	896
BstV1I	GCAGC	1 cut(s)	942
BsuRI	GGCC	1 cut(s)	838
Cac8I	GCNNGC	1 cut(s)	1012
Cfr13I	GGNCC	2 cut(s)	836, 908
CseI	GACGC	1 cut(s)	927
CviAII	CATG	6 cut(s)	136, 426, 649, 781, 1077, 1085
DdeI	CTNAG	3 cut(s)	501, 800, 934
DpnI	GATC	5 cut(s)	24, 243, 366, 516, 951
DpnII	GATC	5 cut(s)	22, 241, 364, 514, 949
Eam1104I	CTCTTC	2 cut(s)	381, 627
EarI	CTCTTC	2 cut(s)	381, 627
Eco130I	CCWWGG	2 cut(s)	56, 470
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	896
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	2 cut(s)	56, 470
EcoT22I	ATGCAT	1 cut(s)	525
ErhI	CCWWGG	2 cut(s)	56, 470
FaeI	CATG	6 cut(s)	139, 429, 652, 784, 1080, 1088
FalI	AAGNNNNNCTT	4 cut(s)	1107, 1139, 1112, 1144
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	6 cut(s)	135, 425, 648, 780, 1076, 1084
Fnu4HI	GCNGC	1 cut(s)	931
Fsp4HI	GCNGC	1 cut(s)	931
FspBI	CTAG	4 cut(s)	57, 77, 471, 747
GluI	GCNGC	1 cut(s)	931
GsuI	CTGGAG	1 cut(s)	880
HaeIII	GGCC	1 cut(s)	838
HgaI	GACGC	1 cut(s)	927
Hin1II	CATG	6 cut(s)	139, 429, 652, 784, 1080, 1088
HindIII	AAGCTT	1 cut(s)	1121
HinfI	GANTC	5 cut(s)	196, 203, 497, 579, 872
HphI	GGTGA	3 cut(s)	131, 649, 1075
Hpy166II	GTNNAC	2 cut(s)	336, 908
Hpy188I	TCNGA	4 cut(s)	103, 502, 514, 713
Hpy188III	TCNNGA	5 cut(s)	20, 45, 200, 618, 1103
Hpy8I	GTNNAC	2 cut(s)	336, 908
HpyAV	CCTTC	6 cut(s)	79, 305, 783, 877, 881, 955
HpyCH4V	TGCA	9 cut(s)	214, 222, 236, 282, 425, 523, 797, 930, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	3 cut(s)	501, 800, 934
Hsp92II	CATG	6 cut(s)	139, 429, 652, 784, 1080, 1088
Kzo9I	GATC	5 cut(s)	22, 241, 364, 514, 949
LmnI	GCTCC	3 cut(s)	137, 146, 419
Lsp1109I	GCAGC	1 cut(s)	942
MaeI	CTAG	4 cut(s)	57, 77, 471, 747
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	5 cut(s)	24, 243, 366, 516, 951
MboI	GATC	5 cut(s)	22, 241, 364, 514, 949
MboII	GAAGA	4 cut(s)	368, 644, 983, 992
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	8 cut(s)	34, 315, 356, 768, 806, 811, 857, 995
MlyI	GAGTC	3 cut(s)	212, 491, 573
Mph1103I	ATGCAT	1 cut(s)	525
MroXI	GAANNNNTTC	2 cut(s)	38, 294
MseI	TTAA	5 cut(s)	173, 314, 533, 585, 767
MslI	CAYNNNNRTG	1 cut(s)	160
MspA1I	CMGCKG	1 cut(s)	956
MspR9I	CCNGG	1 cut(s)	898
MvaI	CCWGG	1 cut(s)	898
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	5 cut(s)	22, 241, 364, 514, 949
NlaIII	CATG	6 cut(s)	139, 429, 652, 784, 1080, 1088
NlaIV	GGNNCC	2 cut(s)	268, 415
NsiI	ATGCAT	1 cut(s)	525
NspI	RCATGY	2 cut(s)	429, 1088
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PdmI	GAANNNNTTC	2 cut(s)	38, 294
PfeI	GAWTC	2 cut(s)	196, 872
PkrI	GCNGC	1 cut(s)	932
PleI	GAGTC	3 cut(s)	211, 491, 573
PpsI	GAGTC	3 cut(s)	211, 491, 573
Psp6I	CCWGG	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	896
PspN4I	GGNNCC	2 cut(s)	268, 415
PspPI	GGNCC	2 cut(s)	836, 908
PvuII	CAGCTG	1 cut(s)	956
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	5 cut(s)	173, 314, 533, 585, 767
SatI	GCNGC	1 cut(s)	931
Sau3AI	GATC	5 cut(s)	22, 241, 364, 514, 949
Sau96I	GGNCC	2 cut(s)	836, 908
SchI	GAGTC	3 cut(s)	212, 491, 573
ScrFI	CCNGG	1 cut(s)	898
SduI	GDGCHC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	908
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	28, 200
SmoI	CTYRAG	2 cut(s)	28, 200
Sse9I	AATT	8 cut(s)	34, 315, 356, 768, 806, 811, 857, 995
SspI	AATATT	2 cut(s)	52, 346
SspMI	CTAG	4 cut(s)	57, 77, 471, 747
StyD4I	CCNGG	1 cut(s)	896
StyI	CCWWGG	2 cut(s)	56, 470
TaqI	TCGA	2 cut(s)	528, 870
TasI	AATT	8 cut(s)	34, 315, 356, 768, 806, 811, 857, 995
TfiI	GAWTC	2 cut(s)	196, 872
Tru1I	TTAA	5 cut(s)	173, 314, 533, 585, 767
Tru9I	TTAA	5 cut(s)	173, 314, 533, 585, 767
TseI	GCWGC	1 cut(s)	930
TspDTI	ATGAA	4 cut(s)	287, 570, 1018, 1127
TspGWI	ACGGA	2 cut(s)	509, 903
VpaK11BI	GGWCC	1 cut(s)	908
XapI	RAATTY	1 cut(s)	811
XceI	RCATGY	2 cut(s)	429, 1088
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmaJI	CCTAGG	2 cut(s)	56, 470
XmnI	GAANNNNTTC	2 cut(s)	38, 294
XspI	CTAG	4 cut(s)	57, 77, 471, 747
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.