Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

34710511 .. 34713825

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0242100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGAAACTAATGATGTATCCCAAGGGTACTAGCACCAGTAGTGATTATCTTTCTCTGTTCTTGGTATTGGATAATCCAGCTGTCCTTCCTCCTGGCTCTGAAGTATTTGCAGAGTTTACATTGCGAATTCTAGATCTGAACTGCGGCAAACATCATTCTCTTAAAAGTGAACAGTGGTTCAGTGCCTCGAGTTGGTCTTGGGGATGGGATGAGTTCCTTACACAGAGGGCCAAGTTTTTCAAGAAAGATCAATGCATTGTGGAGGCAGAAATCACTATTAAAGGAATTTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

6.71

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	15 - 104	2.8e-15	MATH domain
MATH	PF00917	25 - 106	1.9e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	165, 324
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	165, 324
AspS9I	GGNCC	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	66
BfaI	CTAG	3 cut(s)	69, 170, 330
BfmI	CTRYAG	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	2 cut(s)	30, 184
BlsI	GCNGC	2 cut(s)	31, 185
Bme1390I	CCNGG	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	248, 253
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	231
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	3, 172, 286
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	3 cut(s)	3, 172, 286
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	19, 213
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	23, 38
BstF5I	GGATG	2 cut(s)	248, 253
BstKTI	GATC	3 cut(s)	6, 175, 289
BstMBI	GATC	3 cut(s)	3, 172, 286
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	248, 253
BtsIMutI	CAGTG	3 cut(s)	24, 218, 226
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	66
CviJI	RGCY	4 cut(s)	36, 119, 135, 269
CviKI_1	RGCY	4 cut(s)	36, 119, 135, 269
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	2 cut(s)	23, 38
DpnI	GATC	3 cut(s)	5, 174, 288
DpnII	GATC	3 cut(s)	3, 172, 286
Eco130I	CCWWGG	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	60
FaiI	YATR	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	30, 184
FokI	GGATG	2 cut(s)	255, 260
Fsp4HI	GCNGC	2 cut(s)	30, 184
FspBI	CTAG	3 cut(s)	69, 170, 330
GluI	GCNGC	2 cut(s)	30, 184
HaeIII	GGCC	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	156, 209
Hpy188I	TCNGA	2 cut(s)	139, 177
Hpy188III	TCNNGA	2 cut(s)	170, 280
Hpy8I	GTNNAC	2 cut(s)	156, 209
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	2 cut(s)	19, 213
HpyCH4V	TGCA	3 cut(s)	32, 149, 294
HpyF3I	CTNAG	2 cut(s)	23, 38
Kzo9I	GATC	3 cut(s)	3, 172, 286
LpnPI	CCDG	4 cut(s)	88, 117, 129, 144
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	69, 170, 330
MalI	GATC	3 cut(s)	5, 174, 288
MboI	GATC	3 cut(s)	3, 172, 286
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	2 cut(s)	165, 324
MnlI	CCTC	4 cut(s)	138, 235, 258, 295
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	3 cut(s)	201, 318, 334
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	3, 172, 286
NsiI	ATGCAT	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	31, 185
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	267
PspXI	VCTCGAGB	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	201, 318, 334
SatI	GCNGC	2 cut(s)	30, 184
Sau3AI	GATC	3 cut(s)	3, 172, 286
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	2 cut(s)	165, 324
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	3 cut(s)	69, 170, 330
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	19, 213
TaqI	TCGA	1 cut(s)	227
TasI	AATT	2 cut(s)	165, 324
TauI	GCSGC	1 cut(s)	186
Tru1I	TTAA	3 cut(s)	201, 318, 334
Tru9I	TTAA	3 cut(s)	201, 318, 334
TscAI	CASTG	3 cut(s)	24, 218, 226
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	3 cut(s)	24, 218, 226
XapI	RAATTY	2 cut(s)	165, 324
XbaI	TCTAGA	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	226
XspI	CTAG	3 cut(s)	69, 170, 330
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.