Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002930.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

13271 .. 17942

Gene Structure 4672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002930.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgataacaggctccatccctagaggtcttgccagtttaaaacaaatgacaaaggcaggttggatgattagatcttggaggagtaagttgacgttcttgcaggtttttcttgatctaatgcatatggacataaatgtcaaaggagtagagtatgaatatactgatgctcccttactattcatgaacaagttagacttgtcaagtaacaatctgtcgggagaaataccagaagagataaaaattctcacggccttggagagcttgaatttatctcacaaccacttgacaggaaagataccatgcggaggagctggtgttacagtttatttggtgaaggaggagctgttcgacgtaaaggaggagctcgtcggcctcggtggaaggttccggtgcgcggagctcgtcacgtcggcggaggagctcgttggtgtcggcggtaggttgcggtgcagacctcgtcgagctcgtcggttccagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

160

Amino Acids

17.96

Weight (kDa)

8.84

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
Acc36I	ACCTGC	2 cut(s)	47, 91
AccII	CGCG	1 cut(s)	395
AciI	CCGC	5 cut(s)	303, 395, 413, 435, 445
AcsI	RAATTY	2 cut(s)	240, 265
AfiI	CCNNNNNNNGG	2 cut(s)	305, 394
AgsI	TTSAA	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	408
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	7 cut(s)	261, 311, 343, 364, 400, 421, 464
AluI	AGCT	7 cut(s)	261, 311, 343, 364, 400, 421, 464
Alw21I	GWGCWC	4 cut(s)	366, 402, 423, 466
AoxI	GGCC	2 cut(s)	249, 370
ApoI	RAATTY	2 cut(s)	240, 265
AspLEI	GCGC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	343
BanII	GRGCYC	4 cut(s)	366, 402, 423, 466
Bbv12I	GWGCWC	4 cut(s)	366, 402, 423, 466
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	21, 481
BfuAI	ACCTGC	2 cut(s)	47, 91
BglII	AGATCT	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	408
BmiI	GGNNCC	3 cut(s)	13, 386, 473
BmsI	GCATC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	252, 373
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	6 cut(s)	151, 181, 300, 329, 330, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 394
Bse1I	ACTGG	2 cut(s)	33, 475
BseDI	CCNNGG	2 cut(s)	252, 373
BseGI	GGATG	2 cut(s)	15, 69
BseLI	CCNNNNNNNGG	2 cut(s)	305, 394
BseNI	ACTGG	2 cut(s)	33, 475
BseRI	GAGGAG	5 cut(s)	94, 321, 353, 374, 431
BsgI	GTGCAG	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	251, 372
BsiHKAI	GWGCWC	4 cut(s)	366, 402, 423, 466
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	2 cut(s)	305, 394
BsnI	GGCC	2 cut(s)	251, 372
Bsp1286I	GDGCHC	4 cut(s)	366, 402, 423, 466
Bsp143I	GATC	2 cut(s)	71, 112
BspACI	CCGC	5 cut(s)	303, 395, 413, 435, 445
BspANI	GGCC	2 cut(s)	251, 372
BspFNI	CGCG	1 cut(s)	395
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	13, 386, 473
BspMI	ACCTGC	2 cut(s)	47, 91
BsrI	ACTGG	2 cut(s)	33, 475
BssECI	CCNNGG	2 cut(s)	252, 373
BssMI	GATC	2 cut(s)	71, 112
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	15, 69
BstFNI	CGCG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	2 cut(s)	74, 115
BstMBI	GATC	2 cut(s)	71, 112
BstUI	CGCG	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	251, 372
BtrI	CACGTC	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	15, 69
BveI	ACCTGC	2 cut(s)	47, 91
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	395
CviAII	CATG	2 cut(s)	181, 300
DpnI	GATC	2 cut(s)	73, 114
DpnII	GATC	2 cut(s)	71, 112
DraI	TTTAAA	1 cut(s)	39
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	428
Ecl136II	GAGCTC	4 cut(s)	364, 400, 421, 464
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	4 cut(s)	366, 402, 423, 466
Eco53kI	GAGCTC	4 cut(s)	364, 400, 421, 464
EcoICRI	GAGCTC	4 cut(s)	364, 400, 421, 464
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	123
EcoT38I	GRGCYC	4 cut(s)	366, 402, 423, 466
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	184, 303
FaiI	YATR	7 cut(s)	123, 125, 131, 153, 159, 182, 301
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	2 cut(s)	180, 299
FauNDI	CATATG	1 cut(s)	123
FokI	GGATG	2 cut(s)	2, 76
FriOI	GRGCYC	4 cut(s)	366, 402, 423, 466
FspBI	CTAG	2 cut(s)	21, 481
GlaI	GCGC	1 cut(s)	394
HaeIII	GGCC	2 cut(s)	251, 372
HapII	CCGG	1 cut(s)	388
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	184, 303
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188III	TCNNGA	3 cut(s)	110, 181, 216
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	5 cut(s)	353, 371, 412, 462, 471
HpyAV	CCTTC	2 cut(s)	328, 375
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	3 cut(s)	92, 351, 407
HpyCH4V	TGCA	3 cut(s)	100, 121, 450
HpySE526I	ACGT	3 cut(s)	92, 351, 407
Hsp92II	CATG	2 cut(s)	184, 303
HspAI	GCGC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	71, 112
LmnI	GCTCC	7 cut(s)	17, 172, 308, 340, 361, 397, 418
LpnPI	CCDG	7 cut(s)	42, 46, 86, 240, 273, 297, 401
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	21, 481
MaeII	ACGT	3 cut(s)	92, 351, 407
MaeIII	GTNAC	3 cut(s)	203, 316, 403
MalI	GATC	2 cut(s)	73, 114
MboI	GATC	2 cut(s)	71, 112
MboII	GAAGA	1 cut(s)	242
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	4 cut(s)	366, 402, 423, 466
MluCI	AATT	2 cut(s)	240, 265
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	8 cut(s)	17, 72, 299, 331, 352, 383, 409, 465
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	1 cut(s)	38
MspI	CCGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	2 cut(s)	71, 112
NlaIII	CATG	2 cut(s)	184, 303
NlaIV	GGNNCC	3 cut(s)	13, 386, 473
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	456
Psp124BI	GAGCTC	4 cut(s)	366, 402, 423, 466
PspN4I	GGNNCC	3 cut(s)	13, 386, 473
PsuI	RGATCY	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	456
SacI	GAGCTC	4 cut(s)	366, 402, 423, 466
SaqAI	TTAA	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	71, 112
SduI	GDGCHC	4 cut(s)	366, 402, 423, 466
SfaNI	GCATC	1 cut(s)	154
Sse9I	AATT	2 cut(s)	240, 265
SsiI	CCGC	5 cut(s)	303, 395, 413, 435, 445
SspMI	CTAG	2 cut(s)	21, 481
SstI	GAGCTC	4 cut(s)	366, 402, 423, 466
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	3 cut(s)	95, 354, 410
TaqI	TCGA	2 cut(s)	348, 460
TasI	AATT	2 cut(s)	240, 265
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	168, 169, 197
Tth111I	GACNNNGTC	1 cut(s)	456
XapI	RAATTY	2 cut(s)	240, 265
XspI	CTAG	2 cut(s)	21, 481
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.