Rmu_sc0022144.1_g000002

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022144.1
OG0000285
Physical Location & Seq
Reverse (-)
1812 .. 2087
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022144.1_g000002.1.cds

Sequence Viewer

Length: 276 bp
atggctggccacaaagcagctgcttcctttcagcttctttttcttgctaatttctttcttttgattcaatattcttctgttttccttgaagccacaacaatattgccaatctccactactgcttttcatgagaattccaaagttgcttgcatcgaggaagagaggaaggccctccttgaattcaagcatgaccttatagatccttcgtctgtgctcgactcttgggttggagaagactgctgcaagtggaatggcatagtctcaacaaccaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

91

Amino Acids

10.14

Weight (kDa)

5.17

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 2 cut(s) 133, 179
AgsI TTSAA 4 cut(s) 68, 89, 179, 184
AluBI AGCT 2 cut(s) 20, 34
AluI AGCT 2 cut(s) 20, 34
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 1 cut(s) 194
AoxI GGCC 2 cut(s) 7, 168
ApeKI GCWGC 3 cut(s) 17, 20, 240
ApoI RAATTY 2 cut(s) 133, 179
AspS9I GGNCC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 3 cut(s) 7, 29, 227
BcoDI GTCTC 1 cut(s) 265
BisI GCNGC 3 cut(s) 18, 21, 241
BlsI GCNGC 3 cut(s) 19, 22, 242
BmgT120I GGNCC 1 cut(s) 169
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 240
BseXI GCAGC 3 cut(s) 7, 29, 227
BshFI GGCC 2 cut(s) 9, 170
BsiHKAI GWGCWC 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 265
BsnI GGCC 2 cut(s) 9, 170
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 2 cut(s) 9, 170
BspHI TCATGA 1 cut(s) 127
BspPI GGATC 1 cut(s) 194
BssMI GATC 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 7, 148
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 1 cut(s) 199
BstV1I GCAGC 3 cut(s) 7, 29, 227
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 2 cut(s) 9, 170
Cac8I GCNNGC 2 cut(s) 7, 148
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 2 cut(s) 128, 188
CviJI RGCY 6 cut(s) 5, 9, 20, 34, 92, 170
CviKI_1 RGCY 6 cut(s) 5, 9, 20, 34, 92, 170
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 169
EcoRI GAATTC 2 cut(s) 133, 179
FaeI CATG 2 cut(s) 131, 191
FaiI YATR 4 cut(s) 129, 189, 197, 257
FatI CATG 2 cut(s) 127, 187
Fnu4HI GCNGC 3 cut(s) 18, 21, 241
Fsp4HI GCNGC 3 cut(s) 18, 21, 241
GluI GCNGC 3 cut(s) 18, 21, 241
HaeIII GGCC 2 cut(s) 9, 170
Hin1II CATG 2 cut(s) 131, 191
HinfI GANTC 2 cut(s) 64, 218
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 160, 213
HpyCH4V TGCA 2 cut(s) 150, 243
Hsp92II CATG 2 cut(s) 131, 191
Kzo9I GATC 1 cut(s) 199
Lsp1109I GCAGC 3 cut(s) 7, 29, 227
LweI GCATC 1 cut(s) 159
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 66, 170, 245
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 3 cut(s) 49, 133, 179
MluNI TGGCCA 1 cut(s) 9
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 3 cut(s) 148, 156, 182
Mox20I TGGCCA 1 cut(s) 9
MscI TGGCCA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 20
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 131, 191
PagI TCATGA 1 cut(s) 127
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 3 cut(s) 19, 22, 242
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 20
SatI GCNGC 3 cut(s) 18, 21, 241
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 216
SetI ASST 3 cut(s) 22, 36, 195
SfaNI GCATC 1 cut(s) 159
Sse9I AATT 3 cut(s) 49, 133, 179
SspI AATATT 2 cut(s) 71, 102
TaqI TCGA 2 cut(s) 153, 216
TasI AATT 3 cut(s) 49, 133, 179
TfiI GAWTC 1 cut(s) 64
TseI GCWGC 3 cut(s) 17, 20, 240
TspDTI ATGAA 1 cut(s) 116
XapI RAATTY 2 cut(s) 133, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.