Rroxscaffold_4G00301110

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000285
Physical Location & Seq
Forward (+)
21473368 .. 21474015
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301110.1

Sequence Viewer

Length: 519 bp
ATGAATGGTAGTGTTCCCCCTTTCTCAAGTAAAAAGAAGTCACTGGTTTTTCTTGATCTCTCAAGGAATTATTTATCCAGAAATATTCCTTGGGATTGGATGGGTTTACAAGATTTGACCGTCGTAGACTTTCCAAACAACAATCTATCTGGTCAAATTCCAAGCTCTATGTGTTCCCAACTACCATCACTCAAATGGCCGCTGTTGTCCTATTTACGTCTGGGAGCCAATAAGTTTACTGGAAATATTCCTCAACAAATATGTGGTCTCTCCGCTCTTCAGGTTTTAGACCTTTCCCATAATAATATAACAGGCTTCATCCCTAGAGGTCTTGCCAGTTTAAAACAAATGACAAAGGCAGGTTGGATGATTAGATCTTGGAGGAGAAAGTTGACGTTCTTGCAGGTTTTTCTTGATCTAATGCATATGGACATAAATGTCAAAGGAGTAGAGTATGAATATATTGATGCTCCCTTACTATTCATGAACAAGTTAGACTTGTCAAGTAACAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_6 LRR_8

Protein Analysis

172

Amino Acids

19.55

Weight (kDa)

9.51

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 68 - 118 1.5e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
Acc36I ACCTGC 2 cut(s) 350, 394
AccBSI CCGCTC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 126
AciI CCGC 2 cut(s) 200, 273
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 263
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 156
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
BccI CCATC 2 cut(s) 94, 193
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 324
BfuAI ACCTGC 2 cut(s) 350, 394
BglII AGATCT 1 cut(s) 374
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 226
BmsI GCATC 1 cut(s) 457
BpuEI CTTGAG 2 cut(s) 10, 46
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 48, 244, 336
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 3 cut(s) 105, 318, 372
BseNI ACTGG 3 cut(s) 48, 244, 336
BseRI GAGGAG 1 cut(s) 397
BshFI GGCC 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 1 cut(s) 199
Bso31I GGTCTC 1 cut(s) 272
Bsp143I GATC 3 cut(s) 55, 374, 415
BspACI CCGC 2 cut(s) 200, 273
BspANI GGCC 1 cut(s) 199
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 226
BspMI ACCTGC 2 cut(s) 350, 394
BspQI GCTCTTC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 275
BsrI ACTGG 3 cut(s) 48, 244, 336
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 3 cut(s) 55, 374, 415
BssT1I CCWWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 282
BstF5I GGATG 3 cut(s) 105, 318, 372
BstKTI GATC 3 cut(s) 58, 377, 418
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 3 cut(s) 55, 374, 415
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 3 cut(s) 105, 318, 372
BtsIMutI CAGTG 1 cut(s) 41
BveI ACCTGC 2 cut(s) 350, 394
CciI TCATGA 1 cut(s) 483
CviAII CATG 1 cut(s) 484
CviJI RGCY 4 cut(s) 165, 199, 227, 315
CviKI_1 RGCY 4 cut(s) 165, 199, 227, 315
DpnI GATC 3 cut(s) 57, 376, 417
DpnII GATC 3 cut(s) 55, 374, 415
DraI TTTAAA 1 cut(s) 342
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 1 cut(s) 487
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 1 cut(s) 483
FauNDI CATATG 1 cut(s) 426
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 3 cut(s) 112, 305, 379
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 324
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 199
Hin1II CATG 1 cut(s) 487
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
Hpy166II GTNNAC 4 cut(s) 107, 127, 237, 393
Hpy188III TCNNGA 4 cut(s) 53, 78, 413, 484
Hpy8I GTNNAC 4 cut(s) 107, 127, 237, 393
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 217, 395
HpyCH4V TGCA 2 cut(s) 403, 424
HpySE526I ACGT 2 cut(s) 217, 395
Hsp92II CATG 1 cut(s) 487
Kzo9I GATC 3 cut(s) 55, 374, 415
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 224, 475
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 217, 395
MaeIII GTNAC 2 cut(s) 39, 506
MalI GATC 3 cut(s) 57, 376, 417
MbiI CCGCTC 1 cut(s) 275
MboI GATC 3 cut(s) 55, 374, 415
MboII GAAGA 1 cut(s) 269
MflI RGATCY 1 cut(s) 374
MluCI AATT 2 cut(s) 67, 156
MmeI TCCRAC 1 cut(s) 344
MnlI CCTC 3 cut(s) 261, 320, 375
Mph1103I ATGCAT 1 cut(s) 426
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 202
NdeI CATATG 1 cut(s) 426
NdeII GATC 3 cut(s) 55, 374, 415
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 426
PagI TCATGA 1 cut(s) 483
PciSI GCTCTTC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 226
PsuI RGATCY 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 55, 374, 415
SetI ASST 8 cut(s) 167, 220, 285, 294, 331, 364, 398, 408
SfaNI GCATC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 25, 61
SmoI CTYRAG 2 cut(s) 25, 61
Sse9I AATT 2 cut(s) 67, 156
SsiI CCGC 2 cut(s) 200, 273
SspI AATATT 2 cut(s) 85, 247
SspMI CTAG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 220, 398
TasI AATT 2 cut(s) 67, 156
TauI GCSGC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 5 cut(s) 17, 307, 471, 472, 500
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.