Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

47430171 .. 47433100

Gene Structure 2930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57999

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2778 bp

ATGGCTTGCCACAAAGTAGCAGCTGCTTCCTTTCAACTTCTTTCTCTAGTTAGTTTCCTTCTTTTCTTAAATCCATATTCTTCTATTTTCCTTGAAGCCTCAACAATATTTGCCAACTCCAATACTGTCGATGATGAGAGGTCCAATGCAGCTTCCATTGAGGAAGAGAGGAAGGCCCTCCTTGAATTCAAGCAAGGGCTTCAAGATCCTTTGCTTGAGCTTCATTCTTGGGTTGGCAAAGACTGCTGCAACTTGCATGGCATAATCTGCAACAATCAAACAGGTAACATCATCGATCTTCGTCTTCAGGATGCACAAATCTCTGGTACACTTTCAATCAATTCGTTCTCTGGTCCACTTCCGATATCAATCGGAAATCTTTTACATTTGGGGTACTTGGACCTTTCTTCAAACTCAATCTCCGGTCCACTTCCGATATCAATCGGAAATCTTTTACATTTGGGGTACTTGGACCTTTCTTCAAACTCAATCTCCGGTCCACTTCCGATATCAATCGGAAATCTTTTACATTTGGGGTACTTGGACCTTTCTTCAAACTCAGTCTCCGGTCCACTTCCGATATCAATCGGAAATCTTTTACATTTGGAGTACTTGGACCTTTCTTTAAACTCAGTCTCTGGTCCACTTCCGATATCAATCGGAAATCTTTCAAATTTACAGAACTTAAACCTTTTTTCAAACTCAATCTCCGGTTCACTTCCAACATTGATTGGAAATCTTTCAAATTTACAGAACTTAAAGCTTTTTTCAAACTCAATCTCCGGTCCACTTCCAAAATCGATTGGAGGTCTTTCACATTTGCAGACCTTGTTCCTTTCTTTAAACTCAATCTCCGGTCCACTTCCAACATCGATTGGAATTCTTTCACATTTGCAGACCTTGTCCCTTTCTTCAAACTCAATCTCCGGTCCATGCCACTTCCAACATCAATTGGAAATCTTTCAAATTTGCAGACCTCGGACCTTTCCAATAACCCAATCTCAGGAGCTACGCCTCGCAGGGAGTGCAATCTCAGGTCCACTTCCAACATGGATAGGAAATCTGCCATGTTTACGGTGGCTGGAACTTTCCAACAACTCAAAAATGAATGGAACTATTCCAGAAAGCATCGGACAACTTAGAGAGTTAAAGAACTTGTTCCTCCACGGTTGTTCATGGGAAGGCTTTATATCTGAAAATCATTTTCAGAACACTAGCAGATTGGATTCGTTTTATTTATCCAGCGAGGCATTTAACTCTTTGGTTTTCAACGTCAGTCATGACTGGATTCCTATCTTCAATCTTACAAGTCTTCAAATCATTGATTGTAAACTAATGGATACTGCATTTCCTGTATACAATACCGATTGGTTTTGGAGATTTTCACCATTCCTTGATGGTGTGGTATTATCTCATAACCAGTTAAGAGGAAACCTTCCCAAGTCTGTGAGTTCTCCTCTTCAAAACGTTATTTTGAAAAATAACAGTCAGGTAGGTTCCCTTCCACTTTGGCCAAATGTAAAACAACTAAGCTTGGCAAGCAATAGATTTTCAGGGCCTATTCCTTTGAACATTGGCCACGAGATGTCAAAGTTGGTGTTTCTTGATCTCTCAAGGAATTATTTCTCTGGAAATATTCCTAGGGATTGGACGGGTTCGCTAGATTTGAAGATCATAGACTTTTCAAATAACAAGCTATCTGGTGAAATCCCAAGCTCCATGTGCTCCCAACTACCATCACTCAAATGGTTGAGATTAAGCAACAGCAATCTTTCTGGGAATCTTGAGTCGTCTTTGCAAACTTGCAGAAATCTCTCTGCACTTGATCTGACAGGAAACAATTTTTCCGGCACCATACCAGATTGTATTGGAGACAACCTTCATACATTGTCTTATTTACTTCTAGGAGCCAACAAGTTCACCGGAAATATTCCTCATCAATTATGCGATCTCTCCTCTCTTCAGGTTTTAGACCTTTCCCAAAATAATATATCTAGCTCCATTCCTGCATGTCTTGGTGGTTTGAAACAAATGACAACAGGAGATGGCGGCTTGCTTGGAAACAGCTGGGTTATGAACTTGAGGATCTCTTTGAGTCTTTACGGTCCTATGCATATTGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGATAATATTCTAGGACTCATTAAAAAGTTTGACCTGTCAAGTAATAATCTATGGGGAGAAATACCAGAAGAGGTGAAAAATCTCATGGCTTTGGGTAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATGAGCTAGAAGCACTTGACCTCTCTAGTAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTTCACTGAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAGTTCCCCACCTTCGATCCAACCTCATTTGAAGGAAACTCCGGACTTTGTGGACCTCCATTGCCAACCCAATGCAGCTCAGCGTCCCATAATGATCTAGCTCCGAAAGTTGAGGAAGATGAAGAAGATAAGTATGGAAAATTATGGTTCTATGCAAGCACAGCATTGGGGTTCATTGTAGGATTTTGGGTTATTTTTGGAAGTTTGGTGATAAAGAGGTCATGGAGACATGCTTACTTCCAGTTTCTTGACAATATGAAACAAGCTTTGCTTCTGCTTTTGGAAGTGACTCGTTTATCGAGGAGTTTAAGGGCTTGGAAAATGGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

925

Amino Acids

101.2

Weight (kDa)

5.8

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	54 - 91	1.1e-07	Leucine rich repeat N-terminal domain
LRR_14	PF23598	172 - 258	2.3e-13	Leucine-rich repeat region
LRR_8	PF13855	248 - 308	4.8e-06	Leucine rich repeat
LRR_14	PF23598	597 - 678	5.1e-06	Leucine-rich repeat region
LRR_8	PF13855	603 - 664	1.1e-06	Leucine rich repeat
LRR_8	PF13855	726 - 783	3.8e-07	Leucine rich repeat
LRR_14	PF23598	729 - 802	2.9e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1850
AccI	GTMKAC	1 cut(s)	1356
AccIII	TCCGGA	1 cut(s)	2486
AciI	CCGC	1 cut(s)	2049
AclI	AACGTT	1 cut(s)	1467
AclWI	GGATC	3 cut(s)	200, 2093, 2456
AcoI	YGGCCR	2 cut(s)	1511, 1576
AcsI	RAATTY	6 cut(s)	185, 673, 745, 879, 966, 2401
AcuI	CTGAAG	2 cut(s)	290, 1946
AfaI	GTAC	5 cut(s)	328, 395, 467, 539, 611
AfiI	CCNNNNNNNGG	2 cut(s)	1003, 2350
Alw21I	GWGCWC	1 cut(s)	1727
Alw26I	GTCTC	4 cut(s)	568, 640, 1866, 2665
AlwI	GGATC	3 cut(s)	200, 2093, 2456
AlwNI	CAGNNNCTG	1 cut(s)	638
Aor13HI	TCCGGA	1 cut(s)	2486
AoxI	GGCC	5 cut(s)	174, 1511, 1556, 1576, 2426
ApeKI	GCWGC	5 cut(s)	20, 23, 149, 246, 2520
ApoI	RAATTY	6 cut(s)	185, 673, 745, 879, 966, 2401
Asp700I	GAANNNNTTC	6 cut(s)	667, 739, 883, 960, 1157, 1622
AspA2I	CCTAGG	1 cut(s)	1640
AsuHPI	GGTGA	5 cut(s)	1377, 1715, 1912, 2239, 2665
AvrII	CCTAGG	1 cut(s)	1640
BalI	TGGCCA	2 cut(s)	1513, 1578
BanI	GGYRCC	1 cut(s)	1850
BarI	GAAGNNNNNNTAC	2 cut(s)	1485, 1517
BauI	CACGAG	1 cut(s)	1580
BbsI	GAAGAC	2 cut(s)	296, 1304
Bbv12I	GWGCWC	1 cut(s)	1727
BbvI	GCAGC	5 cut(s)	10, 32, 161, 233, 2532
BccI	CCATC	5 cut(s)	1391, 1744, 2039, 2352, 2443
BciVI	GTATCC	1 cut(s)	1333
BcoDI	GTCTC	4 cut(s)	568, 640, 1866, 2665
BfuI	GTATCC	1 cut(s)	1333
BisI	GCNGC	6 cut(s)	21, 24, 150, 247, 2050, 2521
BlnI	CCTAGG	1 cut(s)	1640
BlpI	GCTNAGC	1 cut(s)	2524
BlsI	GCNGC	6 cut(s)	22, 25, 151, 248, 2051, 2522
BmcAI	AGTACT	1 cut(s)	611
BmiI	GGNNCC	3 cut(s)	1498, 1852, 1909
BmsI	GCATC	2 cut(s)	301, 1137
BpiI	GAAGAC	2 cut(s)	296, 1304
BplI	GAGNNNNNCTC	2 cut(s)	1441, 1473
Bpu1102I	GCTNAGC	1 cut(s)	2524
BpuEI	CTTGAG	4 cut(s)	236, 1597, 1805, 2101
Bsa29I	ATCGAT	3 cut(s)	294, 800, 872
BsaBI	GATNNNNATC	6 cut(s)	368, 440, 512, 584, 656, 1292
BsaJI	CCNNGG	3 cut(s)	977, 1165, 1640
BsaWI	WCCGGW	9 cut(s)	422, 494, 566, 710, 782, 854, 926, 1922, 2486
Bsc4I	CCNNNNNNNGG	2 cut(s)	1003, 2350
Bse1I	ACTGG	4 cut(s)	1289, 1420, 2446, 2686
Bse3DI	GCAATG	1 cut(s)	2504
Bse8I	GATNNNNATC	6 cut(s)	368, 440, 512, 584, 656, 1292
BseAI	TCCGGA	1 cut(s)	2486
BseCI	ATCGAT	3 cut(s)	294, 800, 872
BseDI	CCNNGG	3 cut(s)	977, 1165, 1640
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	6 cut(s)	368, 440, 512, 584, 656, 1292
BseLI	CCNNNNNNNGG	2 cut(s)	1003, 2350
BseMI	GCAATG	1 cut(s)	2504
BseMII	CTCAG	6 cut(s)	573, 645, 1016, 1047, 2381, 2538
BseNI	ACTGG	4 cut(s)	1289, 1420, 2446, 2686
BseRI	GAGGAG	3 cut(s)	1446, 1945, 2761
BseXI	GCAGC	5 cut(s)	10, 32, 161, 233, 2532
BseYI	CCCAGC	1 cut(s)	2067
BsgI	GTGCAG	1 cut(s)	1803
BshFI	GGCC	5 cut(s)	176, 1513, 1558, 1578, 2428
BshNI	GGYRCC	1 cut(s)	1850
BshVI	ATCGAT	3 cut(s)	294, 800, 872
BsiHKAI	GWGCWC	1 cut(s)	1727
BslFI	GGGAC	2 cut(s)	889, 2515
BslI	CCNNNNNNNGG	2 cut(s)	1003, 2350
BsmAI	GTCTC	4 cut(s)	568, 640, 1866, 2665
BsmFI	GGGAC	2 cut(s)	889, 2515
BsnI	GGCC	5 cut(s)	176, 1513, 1558, 1578, 2428
Bsp1286I	GDGCHC	1 cut(s)	1727
Bsp13I	TCCGGA	1 cut(s)	2486
Bsp143I	GATC	9 cut(s)	205, 295, 1606, 1671, 1825, 1948, 2085, 2461, 2539
Bsp1720I	GCTNAGC	1 cut(s)	2524
BspACI	CCGC	1 cut(s)	2049
BspANI	GGCC	5 cut(s)	176, 1513, 1558, 1578, 2428
BspCNI	CTCAG	6 cut(s)	572, 644, 1015, 1046, 2382, 2537
BspDI	ATCGAT	3 cut(s)	294, 800, 872
BspEI	TCCGGA	1 cut(s)	2486
BspHI	TCATGA	1 cut(s)	1279
BspLI	GGNNCC	3 cut(s)	1498, 1852, 1909
BspPI	GGATC	3 cut(s)	200, 2093, 2456
BspT107I	GGYRCC	1 cut(s)	1850
BsrDI	GCAATG	1 cut(s)	2504
BsrI	ACTGG	4 cut(s)	1289, 1420, 2446, 2686
BssECI	CCNNGG	3 cut(s)	977, 1165, 1640
BssMI	GATC	9 cut(s)	205, 295, 1606, 1671, 1825, 1948, 2085, 2461, 2539
BssNAI	GTATAC	1 cut(s)	1357
BssSI	CACGAG	1 cut(s)	1580
BssT1I	CCWWGG	1 cut(s)	1640
Bst1107I	GTATAC	1 cut(s)	1357
Bst2BI	CACGAG	1 cut(s)	1580
Bst4CI	ACNGT	5 cut(s)	127, 1077, 1169, 1487, 2105
Bst6I	CTCTTC	4 cut(s)	159, 1464, 1965, 2217
BstAPI	GCANNNNNTGC	3 cut(s)	243, 267, 1025
BstC8I	GCNNGC	4 cut(s)	7, 1540, 2054, 2602
BstDEI	CTNAG	8 cut(s)	559, 631, 1002, 1033, 1139, 1529, 2390, 2524
BstDSI	CCRYGG	1 cut(s)	1165
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	9 cut(s)	208, 298, 1609, 1674, 1828, 1951, 2088, 2464, 2542
BstMAI	GTCTC	4 cut(s)	568, 640, 1866, 2665
BstMBI	GATC	9 cut(s)	205, 295, 1606, 1671, 1825, 1948, 2085, 2461, 2539
BstMWI	GCNNNNNNNGC	6 cut(s)	243, 267, 1025, 1539, 1722, 2606
BstNSI	RCATGY	2 cut(s)	2013, 2678
BstV1I	GCAGC	5 cut(s)	10, 32, 161, 233, 2532
BstV2I	GAAGAC	2 cut(s)	296, 1304
BstX2I	RGATCY	2 cut(s)	205, 2085
BstYI	RGATCY	2 cut(s)	205, 2085
BstZ17I	GTATAC	1 cut(s)	1357
Bsu15I	ATCGAT	3 cut(s)	294, 800, 872
BsuI	GTATCC	1 cut(s)	1333
BsuRI	GGCC	5 cut(s)	176, 1513, 1558, 1578, 2428
BsuTUI	ATCGAT	3 cut(s)	294, 800, 872
BtgI	CCRYGG	1 cut(s)	1165
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	2387
Cac8I	GCNNGC	4 cut(s)	7, 1540, 2054, 2602
CaiI	CAGNNNCTG	1 cut(s)	638
CciI	TCATGA	1 cut(s)	1279
ClaI	ATCGAT	3 cut(s)	294, 800, 872
CseI	GACGC	1 cut(s)	2517
Csp6I	GTAC	5 cut(s)	327, 394, 466, 538, 610
CviQI	GTAC	5 cut(s)	327, 394, 466, 538, 610
DdeI	CTNAG	8 cut(s)	559, 631, 1002, 1033, 1139, 1529, 2390, 2524
DpnI	GATC	9 cut(s)	207, 297, 1608, 1673, 1827, 1950, 2087, 2463, 2541
DpnII	GATC	9 cut(s)	205, 295, 1606, 1671, 1825, 1948, 2085, 2461, 2539
DraI	TTTAAA	2 cut(s)	627, 843
EaeI	YGGCCR	2 cut(s)	1511, 1576
Eam1104I	CTCTTC	4 cut(s)	159, 1464, 1965, 2217
EarI	CTCTTC	4 cut(s)	159, 1464, 1965, 2217
Eco130I	CCWWGG	1 cut(s)	1640
Eco32I	GATATC	5 cut(s)	366, 438, 510, 582, 654
Eco57I	CTGAAG	2 cut(s)	290, 1946
EcoO109I	RGGNCCY	2 cut(s)	175, 1556
EcoRI	GAATTC	2 cut(s)	185, 879
EcoRV	GATATC	5 cut(s)	366, 438, 510, 582, 654
EcoT14I	CCWWGG	1 cut(s)	1640
EcoT22I	ATGCAT	1 cut(s)	2115
ErhI	CCWWGG	1 cut(s)	1640
FalI	AAGNNNNNCTT	2 cut(s)	2700, 2732
FaqI	GGGAC	2 cut(s)	889, 2515
FblI	GTMKAC	1 cut(s)	1356
Fnu4HI	GCNGC	6 cut(s)	21, 24, 150, 247, 2050, 2521
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	6 cut(s)	21, 24, 150, 247, 2050, 2521
GluI	GCNGC	6 cut(s)	21, 24, 150, 247, 2050, 2521
GsaI	CCCAGC	1 cut(s)	2071
HaeIII	GGCC	5 cut(s)	176, 1513, 1558, 1578, 2428
HgaI	GACGC	1 cut(s)	2517
HindIII	AAGCTT	4 cut(s)	761, 1531, 2305, 2709
HinfI	GANTC	7 cut(s)	1226, 1288, 1780, 1787, 2095, 2169, 2734
HphI	GGTGA	5 cut(s)	1377, 1715, 1912, 2239, 2665
HpyAV	CCTTC	9 cut(s)	68, 166, 1175, 1445, 1511, 1889, 2373, 2467, 2471
HpyCH4III	ACNGT	5 cut(s)	127, 1077, 1169, 1487, 2105
HpyCH4IV	ACGT	2 cut(s)	1272, 1467
HpyF10VI	GCNNNNNNNGC	6 cut(s)	243, 267, 1025, 1539, 1722, 2606
HpyF3I	CTNAG	8 cut(s)	559, 631, 1002, 1033, 1139, 1529, 2390, 2524
HpySE526I	ACGT	2 cut(s)	1272, 1467
Kpn2I	TCCGGA	1 cut(s)	2486
Kzo9I	GATC	9 cut(s)	205, 295, 1606, 1671, 1825, 1948, 2085, 2461, 2539
LmnI	GCTCC	6 cut(s)	1006, 1721, 1730, 1907, 2003, 2551
Lsp1109I	GCAGC	5 cut(s)	10, 32, 161, 233, 2532
LweI	GCATC	2 cut(s)	301, 1137
MaeII	ACGT	2 cut(s)	1272, 1467
MaeIII	GTNAC	3 cut(s)	284, 2339, 2731
MalI	GATC	9 cut(s)	207, 297, 1608, 1673, 1827, 1950, 2087, 2463, 2541
MboI	GATC	9 cut(s)	205, 295, 1606, 1671, 1825, 1948, 2085, 2461, 2539
MfeI	CAATTG	1 cut(s)	950
MflI	RGATCY	2 cut(s)	205, 2085
MhlI	GDGCHC	1 cut(s)	1727
MlsI	TGGCCA	2 cut(s)	1513, 1578
MluNI	TGGCCA	2 cut(s)	1513, 1578
MlyI	GAGTC	4 cut(s)	1796, 2104, 2163, 2728
MmeI	TCCRAC	6 cut(s)	746, 890, 967, 1070, 1116, 2489
Mox20I	TGGCCA	2 cut(s)	1513, 1578
Mph1103I	ATGCAT	1 cut(s)	2115
MroI	TCCGGA	1 cut(s)	2486
MroXI	GAANNNNTTC	6 cut(s)	667, 739, 883, 960, 1157, 1622
MscI	TGGCCA	2 cut(s)	1513, 1578
MslI	CAYNNNNRTG	1 cut(s)	1744
Msp20I	TGGCCA	2 cut(s)	1513, 1578
MspA1I	CMGCKG	2 cut(s)	23, 2067
MunI	CAATTG	1 cut(s)	950
MwoI	GCNNNNNNNGC	6 cut(s)	243, 267, 1025, 1539, 1722, 2606
NdeII	GATC	9 cut(s)	205, 295, 1606, 1671, 1825, 1948, 2085, 2461, 2539
NlaIV	GGNNCC	3 cut(s)	1498, 1852, 1909
NmuCI	GTSAC	1 cut(s)	2731
NsiI	ATGCAT	1 cut(s)	2115
NspI	RCATGY	2 cut(s)	2013, 2678
PagI	TCATGA	1 cut(s)	1279
PdmI	GAANNNNTTC	6 cut(s)	667, 739, 883, 960, 1157, 1622
PfeI	GAWTC	3 cut(s)	1226, 1288, 1780
PflFI	GACNNNGTC	1 cut(s)	901
PkrI	GCNGC	6 cut(s)	22, 25, 151, 248, 2051, 2522
PleI	GAGTC	4 cut(s)	1795, 2103, 2163, 2728
PpsI	GAGTC	4 cut(s)	1795, 2103, 2163, 2728
Psp1406I	AACGTT	1 cut(s)	1467
PspFI	CCCAGC	1 cut(s)	2067
PspN4I	GGNNCC	3 cut(s)	1498, 1852, 1909
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	2 cut(s)	205, 2085
PsyI	GACNNNGTC	1 cut(s)	901
PvuII	CAGCTG	2 cut(s)	23, 2067
RsaI	GTAC	5 cut(s)	328, 395, 467, 539, 611
RsaNI	GTAC	5 cut(s)	327, 394, 466, 538, 610
RseI	CAYNNNNRTG	1 cut(s)	1744
SatI	GCNGC	6 cut(s)	21, 24, 150, 247, 2050, 2521
Sau3AI	GATC	9 cut(s)	205, 295, 1606, 1671, 1825, 1948, 2085, 2461, 2539
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	4 cut(s)	1796, 2104, 2163, 2728
SduI	GDGCHC	1 cut(s)	1727
SfaNI	GCATC	2 cut(s)	301, 1137
SmiMI	CAYNNNNRTG	1 cut(s)	1744
SmlI	CTYRAG	4 cut(s)	215, 1612, 1784, 2080
SmoI	CTYRAG	4 cut(s)	215, 1612, 1784, 2080
SsiI	CCGC	1 cut(s)	2049
SspI	AATATT	4 cut(s)	108, 1636, 1930, 2161
StyI	CCWWGG	1 cut(s)	1640
TaaI	ACNGT	5 cut(s)	127, 1077, 1169, 1487, 2105
TaiI	ACGT	2 cut(s)	1275, 1470
TaqI	TCGA	6 cut(s)	129, 294, 800, 872, 2460, 2744
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	2052
TfiI	GAWTC	3 cut(s)	1226, 1288, 1780
TscAI	CASTG	1 cut(s)	2394
TseFI	GTSAC	1 cut(s)	2731
TseI	GCWGC	5 cut(s)	20, 23, 149, 246, 2520
Tsp45I	GTSAC	1 cut(s)	2731
TspDTI	ATGAA	9 cut(s)	212, 1121, 1164, 1871, 2090, 2160, 2580, 2608, 2717
TspRI	CASTG	1 cut(s)	2394
Tth111I	GACNNNGTC	1 cut(s)	901
XapI	RAATTY	6 cut(s)	185, 673, 745, 879, 966, 2401
XceI	RCATGY	2 cut(s)	2013, 2678
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1047, 1074, 1743
XmaJI	CCTAGG	1 cut(s)	1640
XmiI	GTMKAC	1 cut(s)	1356
XmnI	GAANNNNTTC	6 cut(s)	667, 739, 883, 960, 1157, 1622
ZrmI	AGTACT	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	2115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.