Rorug01G0242200

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000285
Physical Location & Seq
Forward (+)
34717107 .. 34720958
3852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0242200.1

Sequence Viewer

Length: 1017 bp
ATGTCAATAATCGGGAGGAGAGGAATTCACTACTTGCATAAACTAAACTCTCCGAACGTCCCAACTGATTTGATACACAAGGGTCAGAACAGGGTCATAGATGCCTCCCTCACTCTTATTCGTGAGAGAGCAAAGCTCAAGGGAGAGCTGGTGCGTGCTTTAGGTGGAGCCGTAGCGTCTTCTTCGCTTCTGGGGGTTCCTTTGGGACATAACTCGTCGTTTCTGCAAGGCCCGGCTTTTGCTCCTCCGAGGATTCGGGAGGCTATTTGGTGCGGTAGCACAAACTCTACAACTGAAGAAGGGAAGGAACTGAAGGATCCGCGGGTGCTAACTGATGTGGGCGATGTGCCTGTGCAAGAGATTCGAGATTGTGGAGTGGATGATGATAGATTGATGAATGTGATAGGGGAGTCTGTCAAGCTAGTGATGGAAGAGGCTCCACTGCGGCCATTAGTATTAGGTGGTGATCACTCAATTTCATATCCTGTTGTAAGAGCTGTCTCTGAGAAGCTTGGGGGACCTGTGGATGTACTTCATCTTGATGCCCATCCTGATATTTATCACTCCTTTGAAGGTAATAAATACTCACATGCATCTTCTTTTGCTCGAATTATGGAGGGTGGTTATGCTCGGCGACTTTTGCAGGTTGGTATTCGCTCAATTAACCATGAAGGGCGTGAACAAGGAAAAAGATTTGGTGTTGAGCAATATGAAATGCGAACCTTTTCAAGAGATCGTGGCTTTTTGGAAAACCTGAAACTAGGGGAAGGTGTGAAGGGTGTCTATATCTCGATAGATGTAGATTGCCTTGATCCTGCCTTTGCTCCAGGAGTATCACACATCGAGCCAGGGGGTCTCTCCTTCCGTGATGTTCTCAACATACTGCACAATCTCCAAGGTGATGTGGTTGCTGCAGATGTCGTTGAATTCAATCCACAGCGCGATACTGTTGATGGGATGACTGCAATGGTAGCTGCTAAACTGGTGAGAGAATTGTCTGCAAAGATATCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

338

Amino Acids

36.91

Weight (kDa)

6.32

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arginase PF00491 62 - 332 2.4e-70 Arginase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 634
AccII CGCG 2 cut(s) 322, 942
AciI CCGC 4 cut(s) 273, 320, 322, 445
AclWI GGATC 3 cut(s) 311, 324, 806
AcoI YGGCCR 1 cut(s) 446
AcsI RAATTY 2 cut(s) 24, 926
AcuI CTGAAG 2 cut(s) 315, 332
AfaI GTAC 1 cut(s) 531
AgsI TTSAA 4 cut(s) 572, 729, 926, 931
AjnI CCWGG 2 cut(s) 826, 847
AluBI AGCT 6 cut(s) 136, 148, 421, 497, 511, 974
AluI AGCT 6 cut(s) 136, 148, 421, 497, 511, 974
Alw26I GTCTC 2 cut(s) 505, 860
AlwI GGATC 3 cut(s) 311, 324, 806
AoxI GGCC 2 cut(s) 229, 446
ApeKI GCWGC 2 cut(s) 911, 974
ApoI RAATTY 2 cut(s) 24, 926
Asp700I GAANNNNTTC 1 cut(s) 724
AspLEI GCGC 1 cut(s) 942
AspS9I GGNCC 2 cut(s) 230, 518
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 3 cut(s) 476, 911, 997
AvaII GGWCC 1 cut(s) 518
BamHI GGATCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 898, 961
BccI CCATC 3 cut(s) 421, 555, 947
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 2 cut(s) 828, 849
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 505, 860
BfaI CTAG 2 cut(s) 422, 761
BfmI CTRYAG 1 cut(s) 912
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 3 cut(s) 446, 912, 975
BlsI GCNGC 3 cut(s) 447, 913, 976
Bme1390I CCNGG 3 cut(s) 233, 828, 849
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 230, 518
BmiI GGNNCC 5 cut(s) 169, 198, 318, 438, 519
BmrFI CCNGG 3 cut(s) 233, 828, 849
BmsI GCATC 3 cut(s) 91, 532, 602
BpiI GAAGAC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpmI CTGGAG 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 233
BsaBI GATNNNNATC 2 cut(s) 546, 558
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 4 cut(s) 248, 320, 848, 895
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bse1I ACTGG 1 cut(s) 987
Bse3DI GCAATG 1 cut(s) 972
Bse8I GATNNNNATC 2 cut(s) 546, 558
BseBI CCWGG 2 cut(s) 828, 849
BseDI CCNNGG 4 cut(s) 248, 320, 848, 895
BseGI GGATG 4 cut(s) 385, 532, 547, 963
BseJI GATNNNNATC 2 cut(s) 546, 558
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 987
BseRI GAGGAG 2 cut(s) 31, 234
BseXI GCAGC 2 cut(s) 898, 961
BsgI GTGCAG 1 cut(s) 869
Bsh1236I CGCG 2 cut(s) 322, 942
BshFI GGCC 2 cut(s) 231, 448
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 3 cut(s) 44, 219, 531
BsmAI GTCTC 2 cut(s) 505, 860
BsmFI GGGAC 3 cut(s) 44, 219, 531
BsnI GGCC 2 cut(s) 231, 448
Bso31I GGTCTC 1 cut(s) 860
Bsp143I GATC 4 cut(s) 316, 466, 733, 811
BspACI CCGC 4 cut(s) 273, 320, 322, 445
BspANI GGCC 2 cut(s) 231, 448
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 2 cut(s) 322, 942
BspLI GGNNCC 5 cut(s) 169, 198, 318, 438, 519
BspMAI CTGCAG 1 cut(s) 916
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 3 cut(s) 311, 324, 806
BspTNI GGTCTC 1 cut(s) 860
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 1 cut(s) 987
BssECI CCNNGG 4 cut(s) 248, 320, 848, 895
BssMI GATC 4 cut(s) 316, 466, 733, 811
BssT1I CCWWGG 1 cut(s) 895
Bst2UI CCWGG 2 cut(s) 828, 849
Bst4CI ACNGT 1 cut(s) 949
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 4 cut(s) 385, 532, 547, 963
BstFNI CGCG 2 cut(s) 322, 942
BstHHI GCGC 1 cut(s) 942
BstKTI GATC 4 cut(s) 319, 469, 736, 814
BstMAI GTCTC 2 cut(s) 505, 860
BstMBI GATC 4 cut(s) 316, 466, 733, 811
BstMWI GCNNNNNNNGC 2 cut(s) 640, 971
BstNI CCWGG 2 cut(s) 828, 849
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 3 cut(s) 231, 826, 847
BstSFI CTRYAG 1 cut(s) 912
BstUI CGCG 2 cut(s) 322, 942
BstV1I GCAGC 2 cut(s) 898, 961
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 2 cut(s) 231, 448
BtgI CCRYGG 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 4 cut(s) 385, 532, 547, 963
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 1 cut(s) 440
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 942
Cfr13I GGNCC 2 cut(s) 230, 518
Cfr42I CCGCGG 1 cut(s) 323
CseI GACGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 530
CviAII CATG 2 cut(s) 590, 668
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 1 cut(s) 504
DpnI GATC 4 cut(s) 318, 468, 735, 813
DpnII GATC 4 cut(s) 316, 466, 733, 811
EaeI YGGCCR 1 cut(s) 446
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 895
Eco31I GGTCTC 1 cut(s) 860
Eco32I GATATC 1 cut(s) 1008
Eco47I GGWCC 1 cut(s) 518
Eco57I CTGAAG 2 cut(s) 315, 332
EcoO109I RGGNCCY 1 cut(s) 518
EcoRI GAATTC 2 cut(s) 24, 926
EcoRII CCWGG 2 cut(s) 826, 847
EcoRV GATATC 1 cut(s) 1008
EcoT14I CCWWGG 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 895
FaeI CATG 2 cut(s) 593, 671
FaqI GGGAC 3 cut(s) 44, 219, 531
FatI CATG 2 cut(s) 589, 667
FauI CCCGC 1 cut(s) 315
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 446, 912, 975
FokI GGATG 4 cut(s) 392, 534, 539, 970
Fsp4HI GCNGC 3 cut(s) 446, 912, 975
FspBI CTAG 2 cut(s) 422, 761
GlaI GCGC 1 cut(s) 941
GluI GCNGC 3 cut(s) 446, 912, 975
GsuI CTGGAG 1 cut(s) 810
HaeIII GGCC 2 cut(s) 231, 448
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 165
HhaI GCGC 1 cut(s) 942
Hin1II CATG 2 cut(s) 593, 671
Hin6I GCGC 1 cut(s) 940
HinP1I GCGC 1 cut(s) 940
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 3 cut(s) 253, 361, 410
HpaII CCGG 1 cut(s) 233
HphI GGTGA 3 cut(s) 476, 911, 997
Hpy166II GTNNAC 1 cut(s) 680
Hpy188I TCNGA 4 cut(s) 54, 87, 249, 505
Hpy188III TCNNGA 8 cut(s) 13, 122, 257, 365, 539, 551, 729, 790
Hpy8I GTNNAC 1 cut(s) 680
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 8 cut(s) 293, 298, 307, 566, 665, 761, 769, 871
HpyCH4III ACNGT 1 cut(s) 949
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 9 cut(s) 37, 226, 355, 593, 643, 886, 914, 965, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 640, 971
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 593, 671
HspAI GCGC 1 cut(s) 940
Ksp22I TGATCA 1 cut(s) 466
KspI CCGCGG 1 cut(s) 323
Kzo9I GATC 4 cut(s) 316, 466, 733, 811
LmnI GCTCC 4 cut(s) 167, 247, 442, 829
Lsp1109I GCAGC 2 cut(s) 898, 961
LweI GCATC 3 cut(s) 91, 532, 602
MaeI CTAG 2 cut(s) 422, 761
MaeII ACGT 1 cut(s) 57
MalI GATC 4 cut(s) 318, 468, 735, 813
MboI GATC 4 cut(s) 316, 466, 733, 811
MboII GAAGA 5 cut(s) 171, 174, 308, 443, 588
MflI RGATCY 1 cut(s) 316
MluCI AATT 6 cut(s) 24, 474, 609, 660, 926, 992
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 9 cut(s) 9, 14, 115, 119, 243, 253, 255, 427, 610
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 724
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 3 cut(s) 233, 828, 849
MvaI CCWGG 2 cut(s) 828, 849
MvnI CGCG 2 cut(s) 322, 942
MwoI GCNNNNNNNGC 2 cut(s) 640, 971
NciI CCSGG 1 cut(s) 233
NdeII GATC 4 cut(s) 316, 466, 733, 811
NlaIII CATG 2 cut(s) 593, 671
NlaIV GGNNCC 5 cut(s) 169, 198, 318, 438, 519
NmeAIII GCCGAG 1 cut(s) 610
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 2 cut(s) 253, 361
PfoI TCCNGGA 1 cut(s) 826
PkrI GCNGC 3 cut(s) 447, 913, 976
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 2 cut(s) 826, 847
PspGI CCWGG 2 cut(s) 826, 847
PspN4I GGNNCC 5 cut(s) 169, 198, 318, 438, 519
PspPI GGNCC 2 cut(s) 230, 518
PspPPI RGGWCCY 1 cut(s) 518
PstI CTGCAG 1 cut(s) 916
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
RseI CAYNNNNRTG 1 cut(s) 540
SacII CCGCGG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 3 cut(s) 446, 912, 975
Sau3AI GATC 4 cut(s) 316, 466, 733, 811
Sau96I GGNCC 2 cut(s) 230, 518
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 233, 828, 849
SfaNI GCATC 3 cut(s) 91, 532, 602
SfcI CTRYAG 1 cut(s) 912
Sfr303I CCGCGG 1 cut(s) 323
SgrBI CCGCGG 1 cut(s) 323
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 6 cut(s) 24, 474, 609, 660, 926, 992
SsiI CCGC 4 cut(s) 273, 320, 322, 445
SspMI CTAG 2 cut(s) 422, 761
StyD4I CCNGG 3 cut(s) 231, 826, 847
StyI CCWWGG 1 cut(s) 895
TaaI ACNGT 1 cut(s) 949
TaiI ACGT 1 cut(s) 60
TaqI TCGA 4 cut(s) 364, 607, 791, 843
TasI AATT 6 cut(s) 24, 474, 609, 660, 926, 992
TatI WGTACW 1 cut(s) 529
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 2 cut(s) 253, 361
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 1 cut(s) 447
TseI GCWGC 2 cut(s) 911, 974
TspDTI ATGAA 5 cut(s) 410, 468, 524, 684, 726
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 2 cut(s) 24, 926
XceI RCATGY 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 2 cut(s) 422, 761
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.