Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

47390439 .. 47391104

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATAAACTTGACGTACTCTGTGGATCTTTTTGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGATAATATCATAGGACTCATTAAAAAGTTTGACCTGTCAAGTAATAATCTATCGGGAGAAATACCAGAAGAGATGAAAAATCTCATGGCTTTGGGTAGCTTGAACTTATCCCACAACCATTTGACAAGAAAGATACCAGAGGGTATCAGAGGCTTACATAAGTTAGAAGCACTTGATCTCTCTAGTAACAATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTGCACTAAGAAAATTGAATTTGTCATTCAACAACTTATCTGGGCCAATCCCATCAGCCAACCAATTCCCCACCTTCGATTCAACCTCATTTGAAGGAAACTCCAGGCTTTGTGGACCTCCATTGCCAACCCTACGCAGCTCAGCGTCCCCTAATGATCTAGCTGTGAAGGCTGAGGAAGATGAAGAAGATAAGTATGGAAAATTATGGTTCTATGCAAGCACATCATTGGGGTTCATTGTAGGATATTGGGTTGTTTTTGGAAGTTTGGTGATAAAGAGGTCCTGGAGACATGCTTACTTCCAGTTTCTTGACAATATGAAAGACAAGCTTTGCTTCTGTTTTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

221

Amino Acids

25.0

Weight (kDa)

5.95

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	39 - 112	1.2e-06	Leucine-rich repeat region
LRR_8	PF13855	77 - 117	2.3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	29, 33
AcsI	RAATTY	1 cut(s)	331
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	6 cut(s)	187, 297, 331, 343, 396, 407
AjnI	CCWGG	2 cut(s)	416, 596
AluBI	AGCT	4 cut(s)	183, 453, 476, 643
AluI	AGCT	4 cut(s)	183, 453, 476, 643
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	2 cut(s)	29, 33
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	356, 428, 594
AsuHPI	GGTGA	1 cut(s)	595
AvaII	GGWCC	2 cut(s)	428, 594
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	373
BciT130I	CCWGG	2 cut(s)	418, 598
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	2 cut(s)	267, 473
BisI	GCNGC	1 cut(s)	451
BlpI	GCTNAGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	418, 598
Bme18I	GGWCC	2 cut(s)	428, 594
BmgT120I	GGNCC	3 cut(s)	356, 428, 594
BmrFI	CCNGG	2 cut(s)	418, 598
BpmI	CTGGAG	2 cut(s)	400, 619
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	418, 598
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	2 cut(s)	468, 477
BseNI	ACTGG	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	25, 34, 259, 469
Bsp1720I	GCTNAGC	1 cut(s)	454
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	2 cut(s)	467, 478
BspPI	GGATC	2 cut(s)	29, 33
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	616
BssMI	GATC	4 cut(s)	25, 34, 259, 469
Bst2UI	CCWGG	2 cut(s)	418, 598
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	3 cut(s)	320, 454, 486
BstKTI	GATC	4 cut(s)	28, 37, 262, 472
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	4 cut(s)	25, 34, 259, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	2 cut(s)	418, 598
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	416, 596
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	356, 428, 594
CseI	GACGC	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	3 cut(s)	169, 301, 605
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	3 cut(s)	320, 454, 486
DpnI	GATC	4 cut(s)	27, 36, 261, 471
DpnII	GATC	4 cut(s)	25, 34, 259, 469
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	428, 594
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	416, 596
EcoT22I	ATGCAT	1 cut(s)	45
FaeI	CATG	3 cut(s)	172, 304, 608
FalI	AAGNNNNNCTT	4 cut(s)	627, 659, 632, 664
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	168, 300, 604
Fnu4HI	GCNGC	1 cut(s)	451
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	2 cut(s)	267, 473
GluI	GCNGC	1 cut(s)	451
GsuI	CTGGAG	2 cut(s)	400, 619
HaeIII	GGCC	1 cut(s)	358
HgaI	GACGC	1 cut(s)	447
Hin1II	CATG	3 cut(s)	172, 304, 608
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	2 cut(s)	99, 392
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	2 cut(s)	138, 623
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	4 cut(s)	303, 397, 401, 475
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	43, 317, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	320, 454, 486
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	172, 304, 608
Kzo9I	GATC	4 cut(s)	25, 34, 259, 469
LpnPI	CCDG	9 cut(s)	131, 162, 234, 339, 403, 430, 583, 610, 629
Lsp1109I	GCAGC	1 cut(s)	462
MaeI	CTAG	2 cut(s)	267, 473
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	4 cut(s)	27, 36, 261, 471
MboI	GATC	4 cut(s)	25, 34, 259, 469
MboII	GAAGA	4 cut(s)	164, 503, 509, 512
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	5 cut(s)	288, 326, 331, 377, 515
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	7 cut(s)	217, 227, 316, 409, 441, 481, 585
Mph1103I	ATGCAT	1 cut(s)	45
MseI	TTAA	3 cut(s)	53, 105, 287
MspR9I	CCNGG	2 cut(s)	418, 598
MvaI	CCWGG	2 cut(s)	418, 598
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	4 cut(s)	25, 34, 259, 469
NlaIII	CATG	3 cut(s)	172, 304, 608
NsiI	ATGCAT	1 cut(s)	45
NspI	RCATGY	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	596
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	416, 596
PspGI	CCWGG	2 cut(s)	416, 596
PspPI	GGNCC	3 cut(s)	356, 428, 594
PspPPI	RGGWCCY	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	53, 105, 287
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	4 cut(s)	25, 34, 259, 469
Sau96I	GGNCC	3 cut(s)	356, 428, 594
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	2 cut(s)	418, 598
SinI	GGWCC	2 cut(s)	428, 594
Sse9I	AATT	5 cut(s)	288, 326, 331, 377, 515
SspMI	CTAG	2 cut(s)	267, 473
StyD4I	CCNGG	2 cut(s)	416, 596
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	48, 390
TasI	AATT	5 cut(s)	288, 326, 331, 377, 515
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	53, 105, 287
Tru9I	TTAA	3 cut(s)	53, 105, 287
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	5 cut(s)	90, 173, 510, 538, 647
VpaK11BI	GGWCC	2 cut(s)	428, 594
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	608
XspI	CTAG	2 cut(s)	267, 473
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.