Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

20289584 .. 20298703

Gene Structure 9120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGAAACATTTTCTCCCAATCTTCTTTATATTCGTGGCCATGCGTTTCATGCTGCCGCCTTTGCGTTTCATCCGTTTCATATGTTTGACGGTCTGCCGCCTTTGCGTGTTTGACGGACAGTATAAAAGGAATAAAAGGAATGCTGCCGCCTTTGCGTGTTTGAAAGGACTGAGCAGCCTTGGAAGGTCATCCACAACAATATTTGCCAACTCCAATACTGTCGATGAGGAGAGGTCCAATGTGGCTTGCATTGAGGAAGAGAGGAAGGCCCTTCTTGAATTCAAGCAAGGTCTTCAAGATCCTTTGCTTGCGCTTCATTCTTGGGTTGGCAAAGACTGCTGCAACTGGCATGGCATAGTCTGCAACAACCATACAGGTAACATCATTGAGCTTCGTCTTTTGCATACACAAATCTCTGGTAGACTTTCAAATTCCATAGGAAGTCTTTCGCATTTGGAGACCTTGGACCTCTTCAACAATTCGTTCTCTGGTCCACTTCCGATATCAATCGGAAATCTTTCACATTTGCAGACCTTGGATCTTTCTGGCAATTCAATCTCTGGTCCACTTCCGATATCAATCGGAGATCTTTCACATTTGCAGAACTTGTACCTTCTCTCAAACTCAATCTCCGGTCCACTTCCAACATCGATTGGAAATCTTTTAAATTTGCAGAACTTGGAACTTGATTTTAACTCAATCTCTGGTCCACTTCCAACATCGATTGCAAATCTTTCAAATTTGCAGACCTTGGGCCTAACCGATGACCTAGTCTCCGGTCCATTTCCAATATCAATCGGAAATCTTTCAAATTTGCAGTACCTATTACTCAGAGGGAATCCAATCTCAGGTCCACTTCCAACATGGATAGGAAATCTGCCACATTTACAGTGGCTGGACCTTTCCTTCAACTCAAAAATGAATGGAACTATTCCAGAAAGCATTGGACAACTTGGAGAGTTGTCCGAATTGCATCTCGAAGGTTGTTCATGGGAAGGCTCTATATCTGAAAATCATTTTCAGAACACTAGCATATTGGACATTTTTCATTTATCCAGCGAGGCATCTAACTCTTTGGTTTTCAACGTCAGTCATGACTGGATTCCTATCTTCAATCTTACAGATCTCGGGATCTGGGATTGTAAACTAATGGATACTGCTTTTCCAGTGTGGCTCAGAAGTCAAAAGTTCCTCGAGTACTTAGAACTTGAGAGAGTCGGAATTTCAGATACAATACCCGATTGGTTTTGGAGATTTTCACCATTCCTTTCTCATGTGAGGTTATCTCATAACCAGTTAAGAGGAAACCTTCCTAAGTCTCCGAGTTCTCCTCTTCAAGAAGTTTATTTGAATAATAACAGTTTGGTAGGAGATGGCTTGCTTAGCAACTGGATGGAGAACATGACGTTCTATGGGCCTGTTTATGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGCTGATATCATAGGACTTATTAAAAAGATTGACCTGTCAAGTAATAATCTATGGGGAGAAATACCAGAAGAGGTCAAAAATCTCATGGCTTTGGGTAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATGAGTTAGAAGCACTTGACCTCTCTAATAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTTCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCTCACCTTCAATGACCCAACCTCATTTGAAGGAAACTCAGGACTTTGCGGGCCTCCATTGCCAACCCAATGCAGTTCAGTTAATGATCCAACTGTGAAGGTTGACGAAGATGAAGAAGATAATTCCAATGTTGCTTGCATCAAGGAAGAGAGAAAGGCTCTCCTTGAATTCAAGCGTGACCTTATAGATCCTTTGTCTGTGCTCGACTCTTGGCTTGGGGAAGACTGCTACAGGAAGTCTTTCACATTTGGAGACCTTGAACCTTTCCATCAACTCAATCTCCGGTGCACTTCAAACATCAATTGGAAATCTTTCACCTTTAGAGACCTTGGACATTTCTTGAACTCGATCTCCAGTCGACTTCCAACATCAATACGAAGTCCGTCACATTTGGTGACCTTGGACCTTTCCAACAACACTATCCTCGGTCCACTTCCGACATCAATTGAACATCTTTCTCATTTGCAGACCTTGAACCTTTTCTTGAACTCAATCTCCAGTCAACTTCCGACATCAATTGGAAATCTCTCACATTTGCAAACCTTGGACCTTTCCTACAACTCTATCTCTGATCCACTTCCAACATCAATAGGAAACCTATCACATTTAGAGACTTTACATCTTCCCAACAATTCAATATCTGGTCCACTTCCAACATCAATTGGAAATCTATCACATTTGCAGACCTTGTACCTTTCCTACAATAAGATCTCCAGTCCACTTCCAAGGTGGATTGGAAATCTGCCAAATTTGGAGTCGTTGTGCCTTTCCAACAACTTGATCTCTAGTCCACTTCCGCCATCAATTGGAAATCTTTCATTTGCAAACCTTGGACCTTTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

873

Amino Acids

96.54

Weight (kDa)

5.34

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	85 - 122	1.1e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	146 - 229	6.2e-13	Leucine-rich repeat region
LRR_14	PF23598	218 - 403	3.4e-16	Leucine-rich repeat region
LRR_8	PF13855	270 - 329	4e-07	Leucine rich repeat
LRR_8	PF13855	500 - 557	1.6e-07	Leucine rich repeat
LRR_14	PF23598	511 - 576	3.4e-06	Leucine-rich repeat region
LRR_8	PF13855	523 - 581	7.2e-07	Leucine rich repeat
LRR_8	PF13855	720 - 780	3.5e-07	Leucine rich repeat
LRR_14	PF23598	740 - 821	2.8e-14	Leucine-rich repeat region
LRR_8	PF13855	744 - 804	8.4e-07	Leucine rich repeat
LRR_14	PF23598	788 - 864	4.7e-10	Leucine-rich repeat region
LRR_8	PF13855	792 - 852	1.6e-10	Leucine rich repeat
LRR_4	PF12799	817 - 854	1.8e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	2579
AccI	GTMKAC	2 cut(s)	421, 2131
AciI	CCGC	5 cut(s)	56, 97, 147, 1821, 2570
AclWI	GGATC	7 cut(s)	293, 546, 1139, 1421, 1853, 1955, 2339
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	9 cut(s)	278, 430, 667, 739, 811, 1221, 1723, 1940, 2521
AfaI	GTAC	4 cut(s)	611, 821, 1199, 2465
AfiI	CCNNNNNNNGG	3 cut(s)	848, 1672, 2579
AloI	GAACNNNNNNTCC	4 cut(s)	2108, 2140, 2252, 2284
AluBI	AGCT	3 cut(s)	391, 1575, 1629
AluI	AGCT	3 cut(s)	391, 1575, 1629
Alw21I	GWGCWC	2 cut(s)	1977, 2063
Alw26I	GTCTC	6 cut(s)	452, 778, 1323, 2019, 2091, 2378
Alw44I	GTGCAC	1 cut(s)	2059
AlwI	GGATC	7 cut(s)	293, 546, 1139, 1421, 1853, 1955, 2339
AlwNI	CAGNNNCTG	1 cut(s)	895
Ama87I	CYCGRG	2 cut(s)	1127, 1193
AoxI	GGCC	6 cut(s)	36, 267, 754, 1415, 1748, 1823
ApaLI	GTGCAC	1 cut(s)	2059
ApeKI	GCWGC	4 cut(s)	52, 143, 174, 339
ApoI	RAATTY	9 cut(s)	278, 430, 667, 739, 811, 1221, 1723, 1940, 2521
ArsI	GACNNNNNNTTYG	2 cut(s)	2513, 2545
Asp700I	GAANNNNTTC	7 cut(s)	445, 517, 805, 2012, 2084, 2252, 2587
AspLEI	GCGC	1 cut(s)	313
AsuHPI	GGTGA	4 cut(s)	1251, 1768, 2080, 2179
AvaI	CYCGRG	2 cut(s)	1127, 1193
BaeGI	GKGCMC	1 cut(s)	2063
BalI	TGGCCA	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	284, 2001
Bbv12I	GWGCWC	2 cut(s)	1977, 2063
BbvI	GCAGC	4 cut(s)	39, 130, 186, 326
BccI	CCATC	6 cut(s)	1367, 1387, 1674, 1765, 2049, 2581
BciVI	GTATCC	1 cut(s)	1147
BcoDI	GTCTC	6 cut(s)	452, 778, 1323, 2019, 2091, 2378
BfaI	CTAG	3 cut(s)	770, 1029, 2559
BfmI	CTRYAG	1 cut(s)	2002
BfuI	GTATCC	1 cut(s)	1147
BglII	AGATCT	3 cut(s)	586, 1123, 2481
BisI	GCNGC	7 cut(s)	53, 56, 97, 144, 147, 175, 340
BlpI	GCTNAGC	1 cut(s)	1382
BlsI	GCNGC	7 cut(s)	54, 57, 98, 145, 148, 176, 341
BmcAI	AGTACT	1 cut(s)	1199
BmeT110I	CYCGRG	2 cut(s)	1127, 1193
BmsI	GCATC	3 cut(s)	982, 1073, 1920
BpiI	GAAGAC	2 cut(s)	284, 2001
BplI	GAGNNNNNCTC	6 cut(s)	1270, 1302, 1315, 1347, 1915, 1947
BpmI	CTGGAG	3 cut(s)	2110, 2254, 2470
Bpu1102I	GCTNAGC	1 cut(s)	1382
BpuEI	CTTGAG	1 cut(s)	1229
Bsa29I	ATCGAT	2 cut(s)	650, 722
BsaBI	GATNNNNATC	3 cut(s)	506, 578, 1106
BsaI	GGTCTC	3 cut(s)	452, 2019, 2091
BsaWI	WCCGGW	3 cut(s)	632, 776, 2055
Bsc4I	CCNNNNNNNGG	3 cut(s)	848, 1672, 2579
Bse1I	ACTGG	8 cut(s)	350, 1103, 1166, 1294, 1394, 2127, 2271, 2487
Bse3DI	GCAATG	1 cut(s)	1829
Bse8I	GATNNNNATC	3 cut(s)	506, 578, 1106
BseCI	ATCGAT	2 cut(s)	650, 722
BseGI	GGATG	3 cut(s)	69, 188, 1398
BseJI	GATNNNNATC	3 cut(s)	506, 578, 1106
BseLI	CCNNNNNNNGG	3 cut(s)	848, 1672, 2579
BseMI	GCAATG	1 cut(s)	1829
BseMII	CTCAG	5 cut(s)	161, 844, 861, 1189, 1824
BseNI	ACTGG	8 cut(s)	350, 1103, 1166, 1294, 1394, 2127, 2271, 2487
BseRI	GAGGAG	2 cut(s)	242, 1320
BseSI	GKGCMC	1 cut(s)	2063
BseXI	GCAGC	4 cut(s)	39, 130, 186, 326
BshFI	GGCC	6 cut(s)	38, 269, 756, 1417, 1750, 1825
BshVI	ATCGAT	2 cut(s)	650, 722
BsiHKAI	GWGCWC	2 cut(s)	1977, 2063
BsiHKCI	CYCGRG	2 cut(s)	1127, 1193
BsiSI	CCGG	3 cut(s)	633, 777, 2056
BslI	CCNNNNNNNGG	3 cut(s)	848, 1672, 2579
BsmAI	GTCTC	6 cut(s)	452, 778, 1323, 2019, 2091, 2378
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	6 cut(s)	38, 269, 756, 1417, 1750, 1825
Bso31I	GGTCTC	3 cut(s)	452, 2019, 2091
BsoBI	CYCGRG	2 cut(s)	1127, 1193
Bsp1286I	GDGCHC	2 cut(s)	1977, 2063
Bsp1720I	GCTNAGC	1 cut(s)	1382
BspACI	CCGC	5 cut(s)	56, 97, 147, 1821, 2570
BspANI	GGCC	6 cut(s)	38, 269, 756, 1417, 1750, 1825
BspCNI	CTCAG	5 cut(s)	162, 843, 860, 1188, 1823
BspDI	ATCGAT	2 cut(s)	650, 722
BspHI	TCATGA	1 cut(s)	1093
BspPI	GGATC	7 cut(s)	293, 546, 1139, 1421, 1853, 1955, 2339
BspTNI	GGTCTC	3 cut(s)	452, 2019, 2091
BsrDI	GCAATG	1 cut(s)	1829
BsrI	ACTGG	8 cut(s)	350, 1103, 1166, 1294, 1394, 2127, 2271, 2487
BssT1I	CCWWGG	9 cut(s)	178, 462, 534, 750, 2101, 2172, 2316, 2498, 2602
Bst4CI	ACNGT	6 cut(s)	91, 120, 220, 891, 1361, 1867
Bst6I	CTCTTC	5 cut(s)	252, 476, 1338, 1539, 1914
BstAPI	GCANNNNNTGC	2 cut(s)	336, 360
BstC8I	GCNNGC	5 cut(s)	247, 309, 1379, 1823, 1909
BstDEI	CTNAG	9 cut(s)	170, 830, 847, 1175, 1201, 1314, 1382, 1712, 1810
BstEII	GGTNACC	1 cut(s)	2167
BstF5I	GGATG	3 cut(s)	69, 188, 1398
BstHHI	GCGC	1 cut(s)	313
BstMAI	GTCTC	6 cut(s)	452, 778, 1323, 2019, 2091, 2378
BstMWI	GCNNNNNNNGC	8 cut(s)	49, 61, 102, 152, 336, 360, 1383, 1831
BstPI	GGTNACC	1 cut(s)	2167
BstSFI	CTRYAG	1 cut(s)	2002
BstSLI	GKGCMC	1 cut(s)	2063
BstV1I	GCAGC	4 cut(s)	39, 130, 186, 326
BstV2I	GAAGAC	2 cut(s)	284, 2001
BstX2I	RGATCY	7 cut(s)	298, 538, 586, 1123, 1131, 1960, 2481
BstYI	RGATCY	7 cut(s)	298, 538, 586, 1123, 1131, 1960, 2481
Bsu15I	ATCGAT	2 cut(s)	650, 722
BsuI	GTATCC	1 cut(s)	1147
BsuRI	GGCC	6 cut(s)	38, 269, 756, 1417, 1750, 1825
BsuTUI	ATCGAT	2 cut(s)	650, 722
BtsCI	GGATG	3 cut(s)	69, 188, 1398
BtsIMutI	CAGTG	2 cut(s)	896, 1173
Cac8I	GCNNGC	5 cut(s)	247, 309, 1379, 1823, 1909
CaiI	CAGNNNCTG	1 cut(s)	895
CciI	TCATGA	1 cut(s)	1093
CfoI	GCGC	1 cut(s)	313
ClaI	ATCGAT	2 cut(s)	650, 722
Csp6I	GTAC	4 cut(s)	610, 820, 1198, 2464
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviQI	GTAC	4 cut(s)	610, 820, 1198, 2464
DdeI	CTNAG	9 cut(s)	170, 830, 847, 1175, 1201, 1314, 1382, 1712, 1810
DraI	TTTAAA	1 cut(s)	666
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	5 cut(s)	252, 476, 1338, 1539, 1914
EarI	CTCTTC	5 cut(s)	252, 476, 1338, 1539, 1914
EciI	GGCGGA	1 cut(s)	2559
Eco130I	CCWWGG	9 cut(s)	178, 462, 534, 750, 2101, 2172, 2316, 2498, 2602
Eco31I	GGTCTC	3 cut(s)	452, 2019, 2091
Eco32I	GATATC	3 cut(s)	504, 576, 1483
Eco88I	CYCGRG	2 cut(s)	1127, 1193
Eco91I	GGTNACC	1 cut(s)	2167
EcoO109I	RGGNCCY	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	2167
EcoRI	GAATTC	2 cut(s)	278, 1940
EcoRV	GATATC	3 cut(s)	504, 576, 1483
EcoT14I	CCWWGG	9 cut(s)	178, 462, 534, 750, 2101, 2172, 2316, 2498, 2602
EcoT22I	ATGCAT	1 cut(s)	1437
ErhI	CCWWGG	9 cut(s)	178, 462, 534, 750, 2101, 2172, 2316, 2498, 2602
FauI	CCCGC	1 cut(s)	1814
FauNDI	CATATG	1 cut(s)	80
FblI	GTMKAC	2 cut(s)	421, 2131
Fnu4HI	GCNGC	7 cut(s)	53, 56, 97, 144, 147, 175, 340
FokI	GGATG	3 cut(s)	56, 175, 1405
Fsp4HI	GCNGC	7 cut(s)	53, 56, 97, 144, 147, 175, 340
FspBI	CTAG	3 cut(s)	770, 1029, 2559
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	7 cut(s)	53, 56, 97, 144, 147, 175, 340
GsuI	CTGGAG	3 cut(s)	2110, 2254, 2470
HaeIII	GGCC	6 cut(s)	38, 269, 756, 1417, 1750, 1825
HapII	CCGG	3 cut(s)	633, 777, 2056
HhaI	GCGC	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	3 cut(s)	1876, 2132, 2276
HindII	GTYRAC	3 cut(s)	1876, 2132, 2276
HindIII	AAGCTT	1 cut(s)	1627
HinfI	GANTC	5 cut(s)	838, 1102, 1215, 1979, 2528
HpaII	CCGG	3 cut(s)	633, 777, 2056
HphI	GGTGA	4 cut(s)	1251, 1768, 2080, 2179
HpyCH4III	ACNGT	6 cut(s)	91, 120, 220, 891, 1361, 1867
HpyCH4IV	ACGT	2 cut(s)	1086, 1406
HpyF10VI	GCNNNNNNNGC	8 cut(s)	49, 61, 102, 152, 336, 360, 1383, 1831
HpyF3I	CTNAG	9 cut(s)	170, 830, 847, 1175, 1201, 1314, 1382, 1712, 1810
HpySE526I	ACGT	2 cut(s)	1086, 1406
HspAI	GCGC	1 cut(s)	311
Lsp1109I	GCAGC	4 cut(s)	39, 130, 186, 326
LweI	GCATC	3 cut(s)	982, 1073, 1920
MaeI	CTAG	3 cut(s)	770, 1029, 2559
MaeII	ACGT	2 cut(s)	1086, 1406
MaeIII	GTNAC	4 cut(s)	377, 1949, 2157, 2167
MfeI	CAATTG	5 cut(s)	2074, 2217, 2289, 2433, 2577
MflI	RGATCY	7 cut(s)	298, 538, 586, 1123, 1131, 1960, 2481
MhlI	GDGCHC	2 cut(s)	1977, 2063
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	3 cut(s)	1224, 1973, 2537
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	1437
MroXI	GAANNNNTTC	7 cut(s)	445, 517, 805, 2012, 2084, 2252, 2587
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	8 cut(s)	665, 693, 1298, 1445, 1497, 1679, 1854, 2617
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	3 cut(s)	633, 777, 2056
MunI	CAATTG	5 cut(s)	2074, 2217, 2289, 2433, 2577
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	8 cut(s)	49, 61, 102, 152, 336, 360, 1383, 1831
NdeI	CATATG	1 cut(s)	80
NmuCI	GTSAC	3 cut(s)	1949, 2157, 2167
NsiI	ATGCAT	1 cut(s)	1437
PaeR7I	CTCGAG	1 cut(s)	1193
PagI	TCATGA	1 cut(s)	1093
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	7 cut(s)	445, 517, 805, 2012, 2084, 2252, 2587
PfeI	GAWTC	2 cut(s)	838, 1102
PflFI	GACNNNGTC	1 cut(s)	770
PflMI	CCANNNNNTGG	1 cut(s)	2579
PkrI	GCNGC	7 cut(s)	54, 57, 98, 145, 148, 176, 341
PleI	GAGTC	3 cut(s)	1223, 1973, 2536
PpsI	GAGTC	3 cut(s)	1223, 1973, 2536
PspEI	GGTNACC	1 cut(s)	2167
PspXI	VCTCGAGB	1 cut(s)	1193
PstNI	CAGNNNCTG	1 cut(s)	895
PsuI	RGATCY	7 cut(s)	298, 538, 586, 1123, 1131, 1960, 2481
PsyI	GACNNNGTC	1 cut(s)	770
RsaI	GTAC	4 cut(s)	611, 821, 1199, 2465
RsaNI	GTAC	4 cut(s)	610, 820, 1198, 2464
SalI	GTCGAC	1 cut(s)	2130
SaqAI	TTAA	8 cut(s)	665, 693, 1298, 1445, 1497, 1679, 1854, 2617
SatI	GCNGC	7 cut(s)	53, 56, 97, 144, 147, 175, 340
ScaI	AGTACT	1 cut(s)	1199
SchI	GAGTC	3 cut(s)	1224, 1973, 2537
SduI	GDGCHC	2 cut(s)	1977, 2063
SfaNI	GCATC	3 cut(s)	982, 1073, 1920
SfcI	CTRYAG	1 cut(s)	2002
Sfr274I	CTCGAG	1 cut(s)	1193
SlaI	CTCGAG	1 cut(s)	1193
SmlI	CTYRAG	2 cut(s)	1193, 1208
SmoI	CTYRAG	2 cut(s)	1193, 1208
SsiI	CCGC	5 cut(s)	56, 97, 147, 1821, 2570
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	3 cut(s)	770, 1029, 2559
StyI	CCWWGG	9 cut(s)	178, 462, 534, 750, 2101, 2172, 2316, 2498, 2602
TaaI	ACNGT	6 cut(s)	91, 120, 220, 891, 1361, 1867
TaiI	ACGT	2 cut(s)	1089, 1409
TaqI	TCGA	9 cut(s)	222, 650, 722, 978, 1194, 1440, 1977, 2120, 2131
TaqII	GACCGA	1 cut(s)	2189
TatI	WGTACW	1 cut(s)	1197
TauI	GCSGC	3 cut(s)	58, 99, 149
TfiI	GAWTC	2 cut(s)	838, 1102
Tru1I	TTAA	8 cut(s)	665, 693, 1298, 1445, 1497, 1679, 1854, 2617
Tru9I	TTAA	8 cut(s)	665, 693, 1298, 1445, 1497, 1679, 1854, 2617
TscAI	CASTG	2 cut(s)	896, 1173
TseFI	GTSAC	3 cut(s)	1949, 2157, 2167
TseI	GCWGC	4 cut(s)	52, 143, 174, 339
TspGWI	ACGGA	3 cut(s)	62, 129, 2145
TspRI	CASTG	2 cut(s)	896, 1173
Tth111I	GACNNNGTC	1 cut(s)	770
Van91I	CCANNNNNTGG	1 cut(s)	2579
VneI	GTGCAC	1 cut(s)	2059
XapI	RAATTY	9 cut(s)	278, 430, 667, 739, 811, 1221, 1723, 1940, 2521
XcmI	CCANNNNNNNNNTGG	3 cut(s)	861, 888, 2499
XhoI	CTCGAG	1 cut(s)	1193
XmiI	GTMKAC	2 cut(s)	421, 2131
XmnI	GAANNNNTTC	7 cut(s)	445, 517, 805, 2012, 2084, 2252, 2587
XspI	CTAG	3 cut(s)	770, 1029, 2559
ZrmI	AGTACT	1 cut(s)	1199
Zsp2I	ATGCAT	1 cut(s)	1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.