RLG00000009356

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
51432748 .. 51435085
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009356

Sequence Viewer

Length: 723 bp
ATGACAACAGAAGATGGCTTGCTTGAAGACAGCTGGGTTGTGAAATTGGCGGTCTCTTTGGTTCTTTTTGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGCTAATATCATAGGACTCATTAAAAAGTTTGACCTGTCAAGTAATAATCTATGGGGAGAAATACCAGAAGAGGTGACAAATCTTATGGCTTTGGATAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATAAGTTAGAAGCACTTGACCTCTCTAGTAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTTCACTAAGCAAATTGAATTTGTCATTCAACAGCTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCCCACCTTCGATCCAACCTCATTTGAAGGAAACTACGGGCTTTGTGGACCTCCATTGCCAACCCAATGCAGCTCAGTGTCCCATAATGATCCGGCTGCGAAGCGGCGGCAACCGGAAGGTTTTCTGCACGCTATAGGGCCCTTCCGGCGTCGTTCTCTTTCAGGTGAACGTAGCAGGCTTGTTGGTGGAGGAGTCGGACCCGTGATAGGATCGGGCTGTTTGGTGCTGGGGTTGGAGTTTGCAGATCTGGTTCCATCGTCGTACTGTGGCACAGCAGTCACCTCTGAGGCGGTGCTGTTGGGTTGA

Protein Analysis

241

Amino Acids

25.71

Weight (kDa)

5.17

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 48 - 105 2.2e-08 Leucine rich repeat
LRR_14 PF23598 52 - 124 9.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 50, 520, 523, 707
AclWI GGATC 4 cut(s) 65, 422, 500, 634
AcsI RAATTY 1 cut(s) 367
AcyI GRCGYC 1 cut(s) 565
AfaI GTAC 1 cut(s) 680
AfiI CCNNNNNNNGG 2 cut(s) 316, 623
AgsI TTSAA 6 cut(s) 26, 223, 333, 367, 379, 443
AluBI AGCT 5 cut(s) 33, 219, 273, 384, 489
AluI AGCT 5 cut(s) 33, 219, 273, 384, 489
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 4 cut(s) 65, 422, 500, 634
AoxI GGCC 2 cut(s) 392, 554
ApaI GGGCCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 486, 512
ApoI RAATTY 1 cut(s) 367
Asp700I GAANNNNTTC 1 cut(s) 537
AspS9I GGNCC 5 cut(s) 392, 464, 554, 555, 614
AsuHPI GGTGA 3 cut(s) 205, 593, 688
AvaII GGWCC 2 cut(s) 464, 614
BaeGI GKGCMC 1 cut(s) 558
BanII GRGCYC 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 498, 499
BccI CCATC 4 cut(s) 8, 318, 409, 679
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 549
BglI GCCNNNNNGGC 1 cut(s) 562
BglII AGATCT 1 cut(s) 661
BisI GCNGC 4 cut(s) 487, 513, 521, 524
BlsI GCNGC 4 cut(s) 488, 514, 522, 525
Bme18I GGWCC 2 cut(s) 464, 614
BmgT120I GGNCC 5 cut(s) 392, 464, 554, 555, 614
BmiI GGNNCC 3 cut(s) 556, 616, 669
BpiI GAAGAC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 565
BsaI GGTCTC 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 529
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 623
Bse3DI GCAATG 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 316, 623
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 2 cut(s) 504, 693
BseRI GAGGAG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 2 cut(s) 498, 499
BseYI CCCAGC 2 cut(s) 33, 643
BsgI GTGCAG 1 cut(s) 527
BshFI GGCC 2 cut(s) 394, 556
BsiSI CCGG 3 cut(s) 509, 530, 562
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 316, 623
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 394, 556
Bso31I GGTCTC 1 cut(s) 58
Bsp120I GGGCCC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 5 cut(s) 70, 427, 505, 626, 661
BspACI CCGC 4 cut(s) 50, 520, 523, 707
BspANI GGCC 2 cut(s) 394, 556
BspCNI CTCAG 2 cut(s) 503, 694
BspLI GGNNCC 3 cut(s) 556, 616, 669
BspPI GGATC 4 cut(s) 65, 422, 500, 634
BspTNI GGTCTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 470
BssMI GATC 5 cut(s) 70, 427, 505, 626, 661
BssNI GRCGYC 1 cut(s) 565
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 565
BstC8I GCNNGC 3 cut(s) 20, 546, 593
BstDEI CTNAG 3 cut(s) 356, 490, 702
BstKTI GATC 5 cut(s) 73, 430, 508, 629, 664
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 5 cut(s) 70, 427, 505, 626, 661
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 549
BstSLI GKGCMC 1 cut(s) 558
BstV1I GCAGC 2 cut(s) 498, 499
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 2 cut(s) 394, 556
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 3 cut(s) 20, 546, 593
Cfr13I GGNCC 5 cut(s) 392, 464, 554, 555, 614
CseI GACGC 1 cut(s) 554
Csp6I GTAC 1 cut(s) 679
CviAII CATG 1 cut(s) 337
CviQI GTAC 1 cut(s) 679
DdeI CTNAG 3 cut(s) 356, 490, 702
DpnI GATC 5 cut(s) 72, 429, 507, 628, 663
DpnII GATC 5 cut(s) 70, 427, 505, 626, 661
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 558
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 464, 614
EcoO109I RGGNCCY 2 cut(s) 554, 555
EcoT22I ATGCAT 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 558
FaeI CATG 1 cut(s) 340
FaqI GGGAC 1 cut(s) 481
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 4 cut(s) 487, 513, 521, 524
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 4 cut(s) 487, 513, 521, 524
FspBI CTAG 1 cut(s) 303
GluI GCNGC 4 cut(s) 487, 513, 521, 524
GsaI CCCAGC 2 cut(s) 37, 647
HaeIII GGCC 2 cut(s) 394, 556
HapII CCGG 3 cut(s) 509, 530, 562
HgaI GACGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 565
Hin1II CATG 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 2 cut(s) 135, 609
HpaII CCGG 3 cut(s) 509, 530, 562
HphI GGTGA 3 cut(s) 205, 593, 688
Hpy166II GTNNAC 2 cut(s) 464, 584
Hpy188I TCNGA 3 cut(s) 269, 614, 703
Hpy8I GTNNAC 2 cut(s) 464, 584
Hpy99I CGWCG 2 cut(s) 570, 679
HpyAV CCTTC 5 cut(s) 339, 433, 437, 527, 568
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 4 cut(s) 79, 486, 544, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 3 cut(s) 356, 490, 702
HpySE526I ACGT 1 cut(s) 586
Hsp92I GRCGYC 1 cut(s) 565
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 5 cut(s) 70, 427, 505, 626, 661
Lsp1109I GCAGC 2 cut(s) 498, 499
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 3 cut(s) 193, 305, 694
MalI GATC 5 cut(s) 72, 429, 507, 628, 663
MboI GATC 5 cut(s) 70, 427, 505, 626, 661
MboII GAAGA 3 cut(s) 23, 38, 200
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 5 cut(s) 44, 324, 362, 367, 413
MlyI GAGTC 2 cut(s) 129, 618
MmeI TCCRAC 3 cut(s) 455, 592, 630
MnlI CCTC 9 cut(s) 184, 253, 308, 352, 445, 477, 599, 697, 709
Mph1103I ATGCAT 1 cut(s) 81
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 3 cut(s) 89, 141, 323
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 3 cut(s) 509, 530, 562
MwoI GCNNNNNNNGC 1 cut(s) 562
NdeII GATC 5 cut(s) 70, 427, 505, 626, 661
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 3 cut(s) 556, 616, 669
NmuCI GTSAC 2 cut(s) 193, 694
NsiI ATGCAT 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 537
PkrI GCNGC 4 cut(s) 488, 514, 522, 525
PleI GAGTC 2 cut(s) 129, 617
PpsI GAGTC 2 cut(s) 129, 617
PspFI CCCAGC 2 cut(s) 33, 643
PspN4I GGNNCC 3 cut(s) 556, 616, 669
PspOMI GGGCCC 1 cut(s) 554
PspPI GGNCC 5 cut(s) 392, 464, 554, 555, 614
PsuI RGATCY 1 cut(s) 661
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 680
RsaNI GTAC 1 cut(s) 679
SaqAI TTAA 3 cut(s) 89, 141, 323
SatI GCNGC 4 cut(s) 487, 513, 521, 524
Sau3AI GATC 5 cut(s) 70, 427, 505, 626, 661
Sau96I GGNCC 5 cut(s) 392, 464, 554, 555, 614
SchI GAGTC 2 cut(s) 129, 618
SduI GDGCHC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 549
SinI GGWCC 2 cut(s) 464, 614
Sse9I AATT 5 cut(s) 44, 324, 362, 367, 413
SsiI CCGC 4 cut(s) 50, 520, 523, 707
SspMI CTAG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 1 cut(s) 589
TaqI TCGA 2 cut(s) 84, 426
TasI AATT 5 cut(s) 44, 324, 362, 367, 413
TauI GCSGC 2 cut(s) 523, 526
Tru1I TTAA 3 cut(s) 89, 141, 323
Tru9I TTAA 3 cut(s) 89, 141, 323
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 2 cut(s) 193, 694
TseI GCWGC 2 cut(s) 486, 512
Tsp45I GTSAC 2 cut(s) 193, 694
TspDTI ATGAA 1 cut(s) 126
TspRI CASTG 1 cut(s) 498
VpaK11BI GGWCC 2 cut(s) 464, 614
XapI RAATTY 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.