Rmu_sc0018378.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018378.1
OG0000285
Physical Location & Seq
Forward (+)
6297 .. 6617
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018378.1_g000001.1.cds

Sequence Viewer

Length: 321 bp
atgaatgccggacccataccaaaatgtattggagaaaacttacagttgttgtcctacttacgtctaggagccaataagtttactggaaatattcctcaacaaatatgtggtctcttcgctcttcaggttttagacctttcccataatgatgtaagagacccaatccctagatgtcttgccaatttaaaacaaatgacgaaggcaggtgagatgattagatcctggaggagcgagctgacgtccttgcaggtttttcttgatctcatgcatatggacataaatgtcaaaggagtagagtatgaatatactgatactccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

106

Amino Acids

11.96

Weight (kDa)

6.05

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
AasI GACNNNNNNGTC 1 cut(s) 281
AatII GACGTC 1 cut(s) 242
Acc36I ACCTGC 2 cut(s) 194, 238
AclWI GGATC 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 116, 150
AlwI GGATC 1 cut(s) 213
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 116, 150
BfaI CTAG 2 cut(s) 65, 168
BfuAI ACCTGC 2 cut(s) 194, 238
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 13, 70
BmrFI CCNGG 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 239
BsaI GGTCTC 2 cut(s) 116, 150
BsaXI ACNNNNNCTCC 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 9
BsmAI GTCTC 2 cut(s) 116, 150
BsmI GAATGC 1 cut(s) 10
Bso31I GGTCTC 2 cut(s) 116, 150
Bsp143I GATC 2 cut(s) 218, 259
BspLI GGNNCC 2 cut(s) 13, 70
BspMI ACCTGC 2 cut(s) 194, 238
BspPI GGATC 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 126
BspTNI GGTCTC 2 cut(s) 116, 150
BsrI ACTGG 1 cut(s) 88
BssMI GATC 2 cut(s) 218, 259
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 2 cut(s) 119, 126
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 233
BstKTI GATC 2 cut(s) 221, 262
BstMAI GTCTC 2 cut(s) 116, 150
BstMBI GATC 2 cut(s) 218, 259
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BveI ACCTGC 2 cut(s) 194, 238
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 11
CviAII CATG 1 cut(s) 265
CviJI RGCY 2 cut(s) 71, 235
CviKI_1 RGCY 2 cut(s) 71, 235
DpnI GATC 2 cut(s) 220, 261
DpnII GATC 2 cut(s) 218, 259
DraI TTTAAA 1 cut(s) 186
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 2 cut(s) 119, 126
EarI CTCTTC 2 cut(s) 119, 126
Eco31I GGTCTC 2 cut(s) 116, 150
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 270
FaeI CATG 1 cut(s) 268
FaiI YATR 9 cut(s) 17, 106, 144, 266, 270, 272, 278, 300, 306
FatI CATG 1 cut(s) 264
FauNDI CATATG 1 cut(s) 270
FspBI CTAG 2 cut(s) 65, 168
GsuI CTGGAG 1 cut(s) 244
HapII CCGG 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 1 cut(s) 268
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 2 cut(s) 61, 239
HpyCH4V TGCA 2 cut(s) 247, 268
HpySE526I ACGT 2 cut(s) 61, 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 2 cut(s) 218, 259
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 68, 228
LpnPI CCDG 7 cut(s) 22, 69, 110, 189, 208, 233, 235
MaeI CTAG 2 cut(s) 65, 168
MaeII ACGT 2 cut(s) 61, 239
MalI GATC 2 cut(s) 220, 261
MboI GATC 2 cut(s) 218, 259
MboII GAAGA 2 cut(s) 106, 113
MflI RGATCY 1 cut(s) 218
MluCI AATT 1 cut(s) 181
MnlI CCTC 2 cut(s) 105, 219
Mph1103I ATGCAT 1 cut(s) 270
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 2 cut(s) 147, 269
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 223
NdeI CATATG 1 cut(s) 270
NdeII GATC 2 cut(s) 218, 259
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 13, 70
NsiI ATGCAT 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 126
PctI GAATGC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 13, 70
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 218
RseI CAYNNNNRTG 2 cut(s) 147, 269
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 2 cut(s) 218, 259
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 223
SetI ASST 7 cut(s) 64, 129, 138, 208, 237, 242, 252
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 147, 269
Sse9I AATT 1 cut(s) 181
SspI AATATT 1 cut(s) 91
SspMI CTAG 2 cut(s) 65, 168
StyD4I CCNGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 2 cut(s) 64, 242
TasI AATT 1 cut(s) 181
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 17, 315
VpaK11BI GGWCC 1 cut(s) 11
XspI CTAG 2 cut(s) 65, 168
ZraI GACGTC 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.