RLG00000028224

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
20299016 .. 20300156
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028224

Sequence Viewer

Length: 981 bp
ATGAGTCCTGCATTTCCAGCGCTCAGAACTCAAAATTTTCTTAGAGACATAACGCTCATAGATGTTGGAATTTCGGATACAATACCCGATTGGTTTTGGAGAATTTCACCTCTCCTCACGTGGTTGGAACTCTCCGACAATCAGTTGAGAGGAGAACTTCCTAACTCCATAAATTCTCCTCTACAGTTCGTGAACAACAACAGCTTAGTAGGTTCCATTCCACTTTGGCCAGATCTAATCAATCTAAGCTTGGGGTGCAACAGATTTTCCGGACCAATTCCCTTAAACATTGGCAGTGAGATGTCAAAGTTGAGTGTCCCAGGTCTTTTTAGGAATAATATGAATGCTCTATGTCCATCACTCAAATGGTTGAGATTAAGCAACAACAATCTTTCTGGGGACCTCGAATTGTCCTTACAAAACTGTGGAAGACTGTCTGCACTTGATTTAACGGGAAATGAATTCTCTAGATCCATACCAAAATGTATTGGAGAAAACTTACAGCTGATGTCCTATTTACGTCTGAGAGCCAATAAGTTTACTGGAAATATTCCTCAACAAATATGTGGTCTCTCTGCTCTTCAGAGTTTAGATCTTTCCCGTAATAATATAACAGGCTCCATCCCTAGCTGTCTTGCCAGTTTAAAACAAATGACAAAGGCAGGTGGGATGATTAGATCTTGGAGGAGAGAGTTGACGTTCTTGCAGGTTTTTCTTGATCTCATGCATATGGACATAAATGTCAAAGGAGTAGAGTATGAATATACAGATGCTCCCTTACTATTCATGAACAAGTTAGACTTGTCAAGTAACAATCTGTCGGGAGAAATACCAGAAGATATAAAAAGTCTCACGGCCTTGGAGAGCTTGAATTTATCTCACAACCACTTGACAGGAAAGATACCGTACGGTATTGGAAGCCTACATAACTTAGAAGCTCTTGACCTCTCTAGTAATCATTTTTGGGTCCAATTCCTTTAG

Protein Analysis

327

Amino Acids

36.36

Weight (kDa)

5.97

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 137 - 219 4.3e-07 Leucine-rich repeat region
LRR_8 PF13855 264 - 321 4.3e-09 Leucine rich repeat
LRR_4 PF12799 286 - 319 8.2e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 653
AasI GACNNNNNNGTC 1 cut(s) 740
Acc36I ACCTGC 2 cut(s) 653, 697
AccIII TCCGGA 1 cut(s) 269
AclWI GGATC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 6 cut(s) 34, 69, 102, 172, 461, 871
AcuI CTGAAG 1 cut(s) 566
AcvI CACGTG 1 cut(s) 120
AfaI GTAC 1 cut(s) 908
AfeI AGCGCT 1 cut(s) 21
AgsI TTSAA 1 cut(s) 871
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 6 cut(s) 204, 249, 505, 630, 867, 938
AluI AGCT 6 cut(s) 204, 249, 505, 630, 867, 938
Alw26I GTCTC 3 cut(s) 39, 575, 854
AlwI GGATC 1 cut(s) 465
Aor13HI TCCGGA 1 cut(s) 269
Aor51HI AGCGCT 1 cut(s) 21
AoxI GGCC 2 cut(s) 227, 855
ApoI RAATTY 6 cut(s) 34, 69, 102, 172, 461, 871
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 3 cut(s) 272, 400, 967
AsuHPI GGTGA 1 cut(s) 99
AvaII GGWCC 3 cut(s) 272, 400, 967
BalI TGGCCA 1 cut(s) 229
BbrPI CACGTG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 436
BccI CCATC 2 cut(s) 364, 629
BceAI ACGGC 1 cut(s) 870
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 70
BcoDI GTCTC 3 cut(s) 39, 575, 854
BfaI CTAG 3 cut(s) 468, 627, 951
BfmI CTRYAG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 2 cut(s) 653, 697
BfuI GTATCC 1 cut(s) 70
BglII AGATCT 3 cut(s) 232, 592, 677
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 3 cut(s) 272, 400, 967
BmgT120I GGNCC 3 cut(s) 272, 400, 967
BmiI GGNNCC 4 cut(s) 214, 401, 619, 968
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 2 cut(s) 319, 858
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 757, 787
Bse1I ACTGG 2 cut(s) 547, 639
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 319, 858
BseGI GGATG 2 cut(s) 621, 675
BseMII CTCAG 2 cut(s) 37, 515
BseNI ACTGG 2 cut(s) 547, 639
BseRI GAGGAG 4 cut(s) 104, 165, 168, 700
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 2 cut(s) 229, 857
BsiSI CCGG 1 cut(s) 270
BsiWI CGTACG 1 cut(s) 906
BslFI GGGAC 2 cut(s) 302, 413
BsmAI GTCTC 3 cut(s) 39, 575, 854
BsmFI GGGAC 2 cut(s) 302, 413
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 2 cut(s) 229, 857
Bso31I GGTCTC 1 cut(s) 575
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 5 cut(s) 232, 470, 592, 677, 718
BspANI GGCC 2 cut(s) 229, 857
BspCNI CTCAG 2 cut(s) 36, 516
BspEI TCCGGA 1 cut(s) 269
BspHI TCATGA 1 cut(s) 786
BspLI GGNNCC 4 cut(s) 214, 401, 619, 968
BspMI ACCTGC 2 cut(s) 653, 697
BspPI GGATC 1 cut(s) 465
BspQI GCTCTTC 1 cut(s) 585
BspTNI GGTCTC 1 cut(s) 575
BsrI ACTGG 2 cut(s) 547, 639
BssECI CCNNGG 2 cut(s) 319, 858
BssMI GATC 5 cut(s) 232, 470, 592, 677, 718
BssT1I CCWWGG 1 cut(s) 858
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 5 cut(s) 186, 425, 435, 906, 911
Bst6I CTCTTC 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 120
BstDEI CTNAG 6 cut(s) 23, 41, 205, 245, 524, 931
BstF5I GGATG 2 cut(s) 621, 675
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 5 cut(s) 235, 473, 595, 680, 721
BstMAI GTCTC 3 cut(s) 39, 575, 854
BstMBI GATC 5 cut(s) 232, 470, 592, 677, 718
BstMWI GCNNNNNNNGC 2 cut(s) 17, 255
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 4 cut(s) 232, 470, 592, 677
BstYI RGATCY 4 cut(s) 232, 470, 592, 677
BsuI GTATCC 1 cut(s) 70
BsuRI GGCC 2 cut(s) 229, 857
BtsCI GGATG 2 cut(s) 621, 675
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
BveI ACCTGC 2 cut(s) 653, 697
CciI TCATGA 1 cut(s) 786
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 272, 400, 967
Csp6I GTAC 1 cut(s) 907
CviAII CATG 2 cut(s) 724, 787
CviQI GTAC 1 cut(s) 907
DdeI CTNAG 6 cut(s) 23, 41, 205, 245, 524, 931
DpnI GATC 5 cut(s) 234, 472, 594, 679, 720
DpnII GATC 5 cut(s) 232, 470, 592, 677, 718
DraI TTTAAA 1 cut(s) 645
DrdI GACNNNNNNGTC 1 cut(s) 740
DseDI GACNNNNNNGTC 1 cut(s) 740
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 858
Eco31I GGTCTC 1 cut(s) 575
Eco47I GGWCC 3 cut(s) 272, 400, 967
Eco47III AGCGCT 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 566
Eco72I CACGTG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 858
EcoT22I ATGCAT 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 858
FaeI CATG 2 cut(s) 727, 790
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 2 cut(s) 302, 413
FatI CATG 2 cut(s) 723, 786
FauNDI CATATG 1 cut(s) 729
FokI GGATG 2 cut(s) 608, 682
FspBI CTAG 3 cut(s) 468, 627, 951
GlaI GCGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 229, 857
HapII CCGG 1 cut(s) 270
HhaI GCGC 1 cut(s) 22
Hin1II CATG 2 cut(s) 727, 790
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 99
Hpy166II GTNNAC 3 cut(s) 193, 540, 696
Hpy188I TCNGA 5 cut(s) 26, 76, 136, 525, 585
Hpy188III TCNNGA 7 cut(s) 190, 270, 468, 716, 787, 822, 941
Hpy8I GTNNAC 3 cut(s) 193, 540, 696
HpyCH4III ACNGT 5 cut(s) 186, 425, 435, 906, 911
HpyCH4IV ACGT 3 cut(s) 119, 520, 698
HpyCH4V TGCA 5 cut(s) 11, 258, 440, 706, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 255
HpyF3I CTNAG 6 cut(s) 23, 41, 205, 245, 524, 931
HpySE526I ACGT 3 cut(s) 119, 520, 698
Hsp92II CATG 2 cut(s) 727, 790
HspAI GCGC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 5 cut(s) 232, 470, 592, 677, 718
LguI GCTCTTC 1 cut(s) 585
LmnI GCTCC 2 cut(s) 623, 778
LweI GCATC 1 cut(s) 760
MaeI CTAG 3 cut(s) 468, 627, 951
MaeII ACGT 3 cut(s) 119, 520, 698
MaeIII GTNAC 1 cut(s) 809
MalI GATC 5 cut(s) 234, 472, 594, 679, 720
MboI GATC 5 cut(s) 232, 470, 592, 677, 718
MboII GAAGA 3 cut(s) 441, 572, 848
MflI RGATCY 4 cut(s) 232, 470, 592, 677
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 9 cut(s) 34, 69, 102, 172, 276, 407, 461, 871, 971
MluNI TGGCCA 1 cut(s) 229
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 3 cut(s) 46, 105, 159
MnlI CCTC 8 cut(s) 120, 125, 143, 189, 413, 564, 678, 956
Mox20I TGGCCA 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 729
MroI TCCGGA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 229
MseI TTAA 4 cut(s) 284, 377, 449, 644
MslI CAYNNNNRTG 2 cut(s) 364, 728
Msp20I TGGCCA 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 17, 255
NdeI CATATG 1 cut(s) 729
NdeII GATC 5 cut(s) 232, 470, 592, 677, 718
NlaIII CATG 2 cut(s) 727, 790
NlaIV GGNNCC 4 cut(s) 214, 401, 619, 968
NsiI ATGCAT 1 cut(s) 729
PagI TCATGA 1 cut(s) 786
PaqCI CACCTGC 1 cut(s) 653
PciSI GCTCTTC 1 cut(s) 585
PctI GAATGC 1 cut(s) 349
Pfl23II CGTACG 1 cut(s) 906
PleI GAGTC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 120
PmlI CACGTG 1 cut(s) 120
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 400
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 319
PspCI CACGTG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 319
PspLI CGTACG 1 cut(s) 906
PspN4I GGNNCC 4 cut(s) 214, 401, 619, 968
PspPI GGNCC 3 cut(s) 272, 400, 967
PspPPI RGGWCCY 1 cut(s) 400
PsuI RGATCY 4 cut(s) 232, 470, 592, 677
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 1 cut(s) 908
RsaNI GTAC 1 cut(s) 907
RseI CAYNNNNRTG 2 cut(s) 364, 728
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 4 cut(s) 284, 377, 449, 644
Sau3AI GATC 5 cut(s) 232, 470, 592, 677, 718
Sau96I GGNCC 3 cut(s) 272, 400, 967
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 321
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 3 cut(s) 272, 400, 967
SmiMI CAYNNNNRTG 2 cut(s) 364, 728
Sse9I AATT 9 cut(s) 34, 69, 102, 172, 276, 407, 461, 871, 971
SspI AATATT 1 cut(s) 550
SspMI CTAG 3 cut(s) 468, 627, 951
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 5 cut(s) 186, 425, 435, 906, 911
TaiI ACGT 3 cut(s) 122, 523, 701
TaqI TCGA 1 cut(s) 405
TasI AATT 9 cut(s) 34, 69, 102, 172, 276, 407, 461, 871, 971
Tru1I TTAA 4 cut(s) 284, 377, 449, 644
Tru9I TTAA 4 cut(s) 284, 377, 449, 644
TscAI CASTG 1 cut(s) 301
TspDTI ATGAA 5 cut(s) 356, 474, 774, 775, 803
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 3 cut(s) 272, 400, 967
XapI RAATTY 6 cut(s) 34, 69, 102, 172, 461, 871
XbaI TCTAGA 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XspI CTAG 3 cut(s) 468, 627, 951
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.