RchiOBHm_Chr7g0207081

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000285
Physical Location & Seq
Reverse (-)
24525466 .. 24525717
252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18532

Sequence Viewer

Length: 252 bp
ATGGATTGGCCAAAGCCAACCAACTTGGCGATACTACGCTTACGGTCAAATGAGTTTAATGGAATCATACCCTTCTCCCTGTGCAGTCTAGCTGGCATTCATGTTTTGGACCTCTCTCACAACAATATTTCAGGAGGCTTGCCAGATTGCTTCAATAACATAACCGCATTGGCTAATGATACTGGAGTTGGTGAAATTGTGGAACTTATGTGGAAAGGAATAGAAAGAGAGTTTCCCATCTTATGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

83

Amino Acids

9.22

Weight (kDa)

4.82

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 7 - 57 3.9e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AoxI GGCC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 109
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BalI TGGCCA 1 cut(s) 10
BccI CCATC 1 cut(s) 245
BfaI CTAG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 243
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 1 cut(s) 10
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 94, 140
BsuRI GGCC 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 94, 140
Cfr13I GGNCC 1 cut(s) 109
CviAII CATG 1 cut(s) 101
CviJI RGCY 5 cut(s) 10, 16, 92, 138, 173
CviKI_1 RGCY 5 cut(s) 10, 16, 92, 138, 173
EaeI YGGCCR 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 109
FaeI CATG 1 cut(s) 104
FaiI YATR 6 cut(s) 68, 102, 161, 209, 244, 250
FatI CATG 1 cut(s) 100
FspBI CTAG 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 104
HinfI GANTC 1 cut(s) 63
HphI GGTGA 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 84
Hsp92II CATG 1 cut(s) 104
LpnPI CCDG 5 cut(s) 78, 92, 117, 156, 168
MaeI CTAG 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 1 cut(s) 195
MluNI TGGCCA 1 cut(s) 10
MnlI CCTC 2 cut(s) 122, 128
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 96
NlaIII CATG 1 cut(s) 104
PctI GAATGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 243
PspPI GGNCC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 109
SetI ASST 2 cut(s) 94, 114
SgeI CNNG 9 cut(s) 37, 91, 101, 105, 113, 144, 151, 155, 195
SinI GGWCC 1 cut(s) 109
Sse9I AATT 1 cut(s) 195
SsiI CCGC 1 cut(s) 165
SspI AATATT 1 cut(s) 127
SspMI CTAG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 45
TasI AATT 1 cut(s) 195
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 109
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.