Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

6725796 .. 6726185

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG085900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAATACACTTCGTGGGAAGTTGCCTGATTCTTTTGGATCCCTGCAGTATTTGGGAACTCTTTCTCTTTCATACAATTCATTCTCAGGCCTATTTCCCATATCAGTTGTTAATCTGTCAAAGCTTTCAACTCTAGACTTTTCCGCCAACCTGATCAGTGGCACCATCCCGGAGAGTATTGGACGACTTACAGAATTATACAGCTTGAATCTGTTGGATAATCATTGGGAAGGAGTTGTGTCTGCAATTCATCTTCACAATCTCACTAATTTAGAATTTTTCTCACTGTCTTCTAAAAATAAATCTTTGTCTCTAGACGTGGGACATGACTGGATTTCTCACTTTAGTCTCGGACTCTCGGCTCCATCACAATCAGTGACTGCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

129

Amino Acids

13.99

Weight (kDa)

5.86

Isoelectric Point (pI)

26.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	5 - 101	7.3e-10	Leucine-rich repeat region
LRR_8	PF13855	9 - 52	9.2e-06	Leucine rich repeat
LRR_8	PF13855	18 - 75	6.1e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	33, 46
AcsI	RAATTY	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	129, 208
AjiI	CACGTC	1 cut(s)	319
AluBI	AGCT	2 cut(s)	124, 204
AluI	AGCT	2 cut(s)	124, 204
Alw26I	GTCTC	2 cut(s)	315, 353
AlwI	GGATC	2 cut(s)	33, 46
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	282
BccI	CCATC	2 cut(s)	173, 373
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	315, 353
BfaI	CTAG	2 cut(s)	134, 314
BfmI	CTRYAG	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	319
BmiI	GGNNCC	3 cut(s)	40, 163, 363
BmrFI	CCNGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	335, 384
BseGI	GGATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	335, 384
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	315, 353
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	38, 153
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	98
BspLI	GGNNCC	3 cut(s)	40, 163, 363
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	2 cut(s)	33, 46
BspT107I	GGYRCC	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	335, 384
BssMI	GATC	2 cut(s)	38, 153
Bst4CI	ACNGT	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	41, 156
BstMAI	GTCTC	2 cut(s)	315, 353
BstMBI	GATC	2 cut(s)	38, 153
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	163, 284, 381
CaiI	CAGNNNCTG	1 cut(s)	380
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	4 cut(s)	90, 124, 204, 362
CviKI_1	RGCY	4 cut(s)	90, 124, 204, 362
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	2 cut(s)	40, 155
DpnII	GATC	2 cut(s)	38, 153
DraIII	CACNNNGTG	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	90
FaeI	CATG	1 cut(s)	329
FaiI	YATR	4 cut(s)	73, 101, 199, 327
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	153
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	2 cut(s)	134, 314
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	3 cut(s)	29, 208, 354
HpaII	CCGG	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	2 cut(s)	134, 314
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	46, 245
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	38, 153
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	6 cut(s)	39, 56, 72, 164, 183, 316
MaeI	CTAG	2 cut(s)	134, 314
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	40, 155
MboI	GATC	2 cut(s)	38, 153
MboII	GAAGA	2 cut(s)	245, 282
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	5 cut(s)	76, 194, 246, 268, 275
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	170
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	38, 153
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	3 cut(s)	40, 163, 363
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	29, 208
PfoI	TCCNGGA	1 cut(s)	168
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	40, 163, 363
PstI	CTGCAG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	38, 153
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	4 cut(s)	126, 153, 206, 321
SfcI	CTRYAG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	76, 194, 246, 268, 275
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	134, 314
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	288
TaiI	ACGT	1 cut(s)	321
TasI	AATT	5 cut(s)	76, 194, 246, 268, 275
TfiI	GAWTC	2 cut(s)	29, 208
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	163, 291, 381
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	17, 60, 69, 239
TspRI	CASTG	3 cut(s)	163, 291, 381
XapI	RAATTY	1 cut(s)	275
XbaI	TCTAGA	2 cut(s)	133, 313
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	2 cut(s)	134, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.