Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

62700047 .. 62700436

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40858

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTCGATTTCCTTGAAGCCACAAGATTGGCTAACTCTGGTGTCAACAGTTTCAAAGTAGCTTGCATTGAGCTGGAGAGGAAGGCACTTCTTAAATTCAAACAAGGCCTGGAAGACCCTTTACATAAGTTCTCTTCTTGGGTTGGAGAAGACTGCTGCAACTGGCTGGGCGTAGGTTGCTGCAACAAAACCGGCAATGTTGTCAAGCTTGACCTCAGCTATTGCTGCTGTATACAGAGTATGAAACCTTTCACGATGGCATGCATAGGGGGTGAGTTAGATTCTTCTTTACTTGACATACTTGAATTACTTGGACCTGAGTCACAACAAGGTCAATGGAATTCCTATCCCAAGTTTCATAGGTTCACTCAACAAGTTGAGGCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

129

Amino Acids

14.41

Weight (kDa)

5.32

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 60	1.8e-11	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	95, 340
AgsI	TTSAA	4 cut(s)	17, 55, 100, 305
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	62, 73, 208, 219
AluI	AGCT	4 cut(s)	62, 73, 208, 219
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	156, 180, 225
ApoI	RAATTY	2 cut(s)	95, 340
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	382
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
BbsI	GAAGAC	2 cut(s)	120, 156
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	3 cut(s)	143, 167, 212
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	110
BisI	GCNGC	3 cut(s)	157, 181, 226
BlsI	GCNGC	3 cut(s)	158, 182, 227
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	110
BoxI	GACNNNNGTC	1 cut(s)	319
BpiI	GAAGAC	2 cut(s)	120, 156
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	229, 309
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	3 cut(s)	143, 167, 212
BseYI	CCCAGC	1 cut(s)	166
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	192
BsnI	GGCC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	228, 310
BspLI	GGNNCC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	191
BssNAI	GTATAC	1 cut(s)	233
Bst1107I	GTATAC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	64, 262
BstDEI	CTNAG	2 cut(s)	215, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 225
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	264
BstPAI	GACNNNNGTC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	143, 167, 212
BstV2I	GAAGAC	2 cut(s)	120, 156
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstZ17I	GTATAC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	64, 262
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	314
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	8 cut(s)	20, 32, 62, 73, 108, 166, 208, 219
CviKI_1	RGCY	8 cut(s)	20, 32, 62, 73, 108, 166, 208, 219
DdeI	CTNAG	2 cut(s)	215, 318
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	266
FaeI	CATG	1 cut(s)	264
FaiI	YATR	7 cut(s)	126, 233, 242, 262, 266, 299, 360
FatI	CATG	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	157, 181, 226
Fsp4HI	GCNGC	3 cut(s)	157, 181, 226
GluI	GCNGC	3 cut(s)	157, 181, 226
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	281, 320
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	3 cut(s)	46, 233, 366
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	3 cut(s)	46, 233, 366
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	4 cut(s)	66, 159, 183, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 225
HpyF3I	CTNAG	2 cut(s)	215, 318
Hsp92II	CATG	1 cut(s)	264
LpnPI	CCDG	8 cut(s)	24, 59, 95, 122, 148, 152, 205, 330
Lsp1109I	GCAGC	3 cut(s)	143, 167, 212
MaeIII	GTNAC	1 cut(s)	321
MboII	GAAGA	4 cut(s)	125, 126, 161, 276
MluCI	AATT	3 cut(s)	95, 305, 340
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	72, 224, 373
Mph1103I	ATGCAT	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	93, 388
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	177, 225
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	1 cut(s)	264
PaeI	GCATGC	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	158, 182, 227
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PshAI	GACNNNNGTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	93, 388
SatI	GCNGC	3 cut(s)	157, 181, 226
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	314
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	3 cut(s)	95, 305, 340
SseBI	AGGCCT	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	6
TasI	AATT	3 cut(s)	95, 305, 340
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	93, 388
Tru9I	TTAA	2 cut(s)	93, 388
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	3 cut(s)	156, 180, 225
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	257, 347
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	2 cut(s)	95, 340
XceI	RCATGY	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.