Rroxscaffold_4G00301930

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000285
Physical Location & Seq
Reverse (-)
22303761 .. 22312693
8933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301930.1

Sequence Viewer

Length: 357 bp
ATGAATTCTGGACCCATACCAAAATGTATTGGAGAAAACTTACAGTTCTTGTCCTACTTACGTCTGGGAGCCAATAAGTTTACTGGAAATATTCCTGAACAAATATGTGGTCTCTTCGCTCTTCAGGTTTTAGATCTTTCCCATAATGATATAAGAGACCCCATCCCTAGATGTCTTGCCAATTTAAAACAAATGACAAAGGCAGTAACCGGTCGGAGTAACCGACCAAGTAAGGCGATTGCTGCATCGGTTAAATATCAAATTCACGCTTCCGCTGTGATTTTTAGCAGCAAATTGGGGAAAAAGCAAAAACAGCAAGTGGAAGGAAACTTCGATCTCTTGCAACTCGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

118

Amino Acids

13.01

Weight (kDa)

9.62

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 13 - 67 9.5e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AcsI RAATTY 2 cut(s) 4, 261
AcuI CTGAAG 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 116, 150
Ama87I CYCGRG 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 242, 288
ApoI RAATTY 2 cut(s) 4, 261
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
AsiGI ACCGGT 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 11
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 229, 300
BccI CCATC 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 116, 150
BfaI CTAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 243, 289
BlsI GCNGC 2 cut(s) 244, 290
Bme18I GGWCC 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 13, 70
BmsI GCATC 1 cut(s) 254
BsaI GGTCTC 2 cut(s) 116, 150
BsaWI WCCGGW 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 229, 300
Bsh1285I CGRYCG 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 116, 150
Bso31I GGTCTC 2 cut(s) 116, 150
BsoBI CYCGRG 1 cut(s) 347
Bsp143I GATC 2 cut(s) 133, 334
BspACI CCGC 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 13, 70
BspQI GCTCTTC 1 cut(s) 126
BspTNI GGTCTC 2 cut(s) 116, 150
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 209
BssMI GATC 2 cut(s) 133, 334
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 2 cut(s) 119, 126
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 136, 337
BstMAI GTCTC 2 cut(s) 116, 150
BstMBI GATC 2 cut(s) 133, 334
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 242, 313
BstV1I GCAGC 2 cut(s) 229, 300
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtsCI GGATG 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 11
CspAI ACCGGT 1 cut(s) 209
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
DpnI GATC 2 cut(s) 135, 336
DpnII GATC 2 cut(s) 133, 334
DraI TTTAAA 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 119, 126
EarI CTCTTC 2 cut(s) 119, 126
Eco31I GGTCTC 2 cut(s) 116, 150
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 4
FaiI YATR 4 cut(s) 17, 106, 144, 152
Fnu4HI GCNGC 2 cut(s) 243, 289
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 243, 289
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 243, 289
HapII CCGG 1 cut(s) 210
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 3 cut(s) 9, 95, 349
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 245, 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 313
HpySE526I ACGT 1 cut(s) 61
Kzo9I GATC 2 cut(s) 133, 334
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 50, 69, 108, 110, 223
Lsp1109I GCAGC 2 cut(s) 229, 300
LweI GCATC 1 cut(s) 254
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 2 cut(s) 205, 218
MalI GATC 2 cut(s) 135, 336
MboI GATC 2 cut(s) 133, 334
MboII GAAGA 2 cut(s) 106, 113
MflI RGATCY 1 cut(s) 133
MluCI AATT 5 cut(s) 4, 181, 261, 293, 352
MmeI TCCRAC 1 cut(s) 194
MseI TTAA 2 cut(s) 185, 252
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 242, 313
NdeII GATC 2 cut(s) 133, 334
NlaIV GGNNCC 2 cut(s) 13, 70
PaeR7I CTCGAG 1 cut(s) 347
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PinAI ACCGGT 1 cut(s) 209
PkrI GCNGC 2 cut(s) 244, 290
PspN4I GGNNCC 2 cut(s) 13, 70
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 185, 252
SatI GCNGC 2 cut(s) 243, 289
Sau3AI GATC 2 cut(s) 133, 334
Sau96I GGNCC 1 cut(s) 11
SetI ASST 2 cut(s) 64, 129
SfaNI GCATC 1 cut(s) 254
Sfr274I CTCGAG 1 cut(s) 347
SinI GGWCC 1 cut(s) 11
SlaI CTCGAG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 5 cut(s) 4, 181, 261, 293, 352
SsiI CCGC 1 cut(s) 273
SspI AATATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 333, 348
TasI AATT 5 cut(s) 4, 181, 261, 293, 352
Tru1I TTAA 2 cut(s) 185, 252
Tru9I TTAA 2 cut(s) 185, 252
TseI GCWGC 2 cut(s) 242, 288
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 4, 261
XhoI CTCGAG 1 cut(s) 347
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.