Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

62698804 .. 62699586

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40856

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGATGTACAACAATTTGTTGAGGATTTGTCTACATGCAGTAATAGTAGCTTAGAAGTGCTAGATTTCATGTCAAGTAATCTCCATGGATCACTGCCTGAATCTTTGGGATCCCTTAAATATTTGGAAAGTGAACTCATTCTCGGGTCCTCTCCCAGCCACAATAGGAAATCTGTCACATTTGCAGGTCCTGGACCTGGCCTTCAACAACATGATGAATGGCACCATCCCAGAAAGTATCGGACAACTTTCAGAGTTGAGAGCATTGCTACTCTGGGAGTCTGGGGTGGTTCATGGGAAGGTGTTATATCTGAAATTCATCTTCACAATCTCTCTAGTTTGATAAGTTTTTCTCTGTCTTCCACAAACTCTTTGGTTTTCCATGTCAGTCTTGACTGGACTCCTCCCTTCAATCTATTGTTTCTCTCCATCAGTGATTGCAAACTGATGAATCCCGCTTTTCCAATGTGGCTCAGAAATCAGAGTTTCCTCGATGAAATAAATTTCTCAAACGTTGGAATTTCAGATTCAATACCTGATTGGTTTTGGAAAATGTCACAATCTTATTATGATTGGTGGTTTACTGTGGATCTCTCTGATAATCAATTGAGAGGACGCCTTCCAAGCACAGTAAATTTTTGTGTTGGAGCATACGTTAATTTGAATACCAACTTCTTGGAGGGTTCTCTTCCACTTTGGCAAAATGTAACATTTTCCGGACCAATTCCCACGAGCATTGGCGAGGAGATGCCAAAGATGGTGACCCTAGATCTTTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

260

Amino Acids

29.28

Weight (kDa)

4.85

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	716
AciI	CCGC	1 cut(s)	456
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	4 cut(s)	97, 105, 118, 597
AcsI	RAATTY	4 cut(s)	315, 502, 519, 634
AcyI	GRCGYC	1 cut(s)	616
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	206, 412, 531, 664
AjnI	CCWGG	2 cut(s)	190, 196
AluBI	AGCT	2 cut(s)	51, 780
AluI	AGCT	2 cut(s)	51, 780
AlwI	GGATC	4 cut(s)	97, 105, 118, 597
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	716
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	4 cut(s)	315, 502, 519, 634
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	4 cut(s)	147, 188, 194, 719
AsuHPI	GGTGA	1 cut(s)	772
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	4 cut(s)	147, 188, 194, 719
BamHI	GGATCC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	351
BccI	CCATC	3 cut(s)	234, 437, 751
BciT130I	CCWGG	2 cut(s)	192, 198
BfaI	CTAG	5 cut(s)	62, 336, 767, 777, 781
BfuAI	ACCTGC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	769
Bme1390I	CCNGG	2 cut(s)	192, 198
Bme18I	GGWCC	4 cut(s)	147, 188, 194, 719
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	4 cut(s)	147, 188, 194, 719
BmiI	GGNNCC	3 cut(s)	112, 148, 224
BmrFI	CCNGG	2 cut(s)	192, 198
BmsI	GCATC	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	716
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	716
BseBI	CCWGG	2 cut(s)	192, 198
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	10, 226
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	487
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	2 cut(s)	393, 758
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	197
BsnI	GGCC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	716
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	4 cut(s)	89, 110, 589, 769
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	486
BspEI	TCCGGA	1 cut(s)	716
BspLI	GGNNCC	3 cut(s)	112, 148, 224
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	4 cut(s)	97, 105, 118, 597
BspT107I	GGYRCC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	264
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	4 cut(s)	89, 110, 589, 769
BssNI	GRCGYC	1 cut(s)	616
BssSI	CACGAG	1 cut(s)	730
BssT1I	CCWWGG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	730
Bst2UI	CCWGG	2 cut(s)	192, 198
Bst4CI	ACNGT	2 cut(s)	586, 631
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	1 cut(s)	616
BstAUI	TGTACA	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	52, 473
BstDSI	CCRYGG	1 cut(s)	85
BstEII	GGTNACC	1 cut(s)	760
BstF5I	GGATG	2 cut(s)	10, 226
BstKTI	GATC	4 cut(s)	92, 113, 592, 772
BstMBI	GATC	4 cut(s)	89, 110, 589, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	624
BstNI	CCWGG	2 cut(s)	192, 198
BstNSI	RCATGY	1 cut(s)	39
BstPI	GGTNACC	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	190, 196
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	3 cut(s)	110, 589, 769
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	3 cut(s)	110, 589, 769
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	10, 226
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	2 cut(s)	92, 439
BveI	ACCTGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	4 cut(s)	147, 188, 194, 719
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CviAII	CATG	6 cut(s)	36, 70, 86, 212, 294, 383
CviJI	RGCY	5 cut(s)	51, 159, 201, 472, 780
CviKI_1	RGCY	5 cut(s)	51, 159, 201, 472, 780
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	52, 473
DpnI	GATC	4 cut(s)	91, 112, 591, 771
DpnII	GATC	4 cut(s)	89, 110, 589, 769
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	85
Eco47I	GGWCC	4 cut(s)	147, 188, 194, 719
Eco88I	CYCGRG	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	760
EcoO109I	RGGNCCY	2 cut(s)	147, 188
EcoO65I	GGTNACC	1 cut(s)	760
EcoRII	CCWGG	2 cut(s)	190, 196
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	6 cut(s)	39, 73, 89, 215, 297, 386
FaiI	YATR	9 cut(s)	37, 71, 87, 213, 295, 308, 384, 570, 652
FatI	CATG	6 cut(s)	35, 69, 85, 211, 293, 382
FauI	CCCGC	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	32
FokI	GGATG	2 cut(s)	17, 213
FspBI	CTAG	5 cut(s)	62, 336, 767, 777, 781
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	717
HgaI	GACGC	1 cut(s)	624
Hin1I	GRCGYC	1 cut(s)	616
Hin1II	CATG	6 cut(s)	39, 73, 89, 215, 297, 386
HinfI	GANTC	5 cut(s)	101, 279, 400, 451, 527
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	1 cut(s)	772
Hpy166II	GTNNAC	3 cut(s)	33, 134, 582
Hpy188I	TCNGA	7 cut(s)	243, 254, 313, 476, 483, 526, 598
Hpy188III	TCNNGA	2 cut(s)	392, 717
Hpy8I	GTNNAC	3 cut(s)	33, 134, 582
HpyAV	CCTTC	4 cut(s)	212, 293, 418, 629
HpyCH4III	ACNGT	2 cut(s)	586, 631
HpyCH4IV	ACGT	2 cut(s)	513, 654
HpyCH4V	TGCA	3 cut(s)	39, 185, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	624
HpyF3I	CTNAG	2 cut(s)	52, 473
HpySE526I	ACGT	2 cut(s)	513, 654
Hsp92I	GRCGYC	1 cut(s)	616
Hsp92II	CATG	6 cut(s)	39, 73, 89, 215, 297, 386
Kpn2I	TCCGGA	1 cut(s)	716
Kzo9I	GATC	4 cut(s)	89, 110, 589, 769
LmnI	GCTCC	1 cut(s)	647
LweI	GCATC	1 cut(s)	738
MaeI	CTAG	5 cut(s)	62, 336, 767, 777, 781
MaeII	ACGT	2 cut(s)	513, 654
MaeIII	GTNAC	4 cut(s)	175, 555, 706, 760
MalI	GATC	4 cut(s)	91, 112, 591, 771
MboI	GATC	4 cut(s)	89, 110, 589, 769
MboII	GAAGA	3 cut(s)	314, 351, 680
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	3 cut(s)	110, 589, 769
MluCI	AATT	8 cut(s)	14, 315, 502, 519, 605, 634, 658, 723
MlyI	GAGTC	2 cut(s)	288, 394
MmeI	TCCRAC	2 cut(s)	496, 625
MnlI	CCTC	7 cut(s)	16, 160, 414, 500, 605, 673, 736
MroI	TCCGGA	1 cut(s)	716
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	2 cut(s)	117, 657
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	2 cut(s)	192, 198
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	2 cut(s)	192, 198
MwoI	GCNNNNNNNGC	1 cut(s)	624
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	4 cut(s)	89, 110, 589, 769
NlaIII	CATG	6 cut(s)	39, 73, 89, 215, 297, 386
NlaIV	GGNNCC	3 cut(s)	112, 148, 224
NmuCI	GTSAC	3 cut(s)	175, 555, 760
NspI	RCATGY	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	101, 451, 527
PfoI	TCCNGGA	1 cut(s)	190
PleI	GAGTC	2 cut(s)	287, 394
PpsI	GAGTC	2 cut(s)	287, 394
PpuMI	RGGWCCY	2 cut(s)	147, 188
Psp1406I	AACGTT	1 cut(s)	513
Psp5II	RGGWCCY	2 cut(s)	147, 188
Psp6I	CCWGG	2 cut(s)	190, 196
PspEI	GGTNACC	1 cut(s)	760
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	190, 196
PspN4I	GGNNCC	3 cut(s)	112, 148, 224
PspPI	GGNCC	4 cut(s)	147, 188, 194, 719
PspPPI	RGGWCCY	2 cut(s)	147, 188
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	3 cut(s)	110, 589, 769
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	117, 657
Sau3AI	GATC	4 cut(s)	89, 110, 589, 769
Sau96I	GGNCC	4 cut(s)	147, 188, 194, 719
SchI	GAGTC	2 cut(s)	288, 394
ScrFI	CCNGG	2 cut(s)	192, 198
SetI	ASST	8 cut(s)	53, 190, 199, 304, 516, 538, 657, 782
SfaNI	GCATC	1 cut(s)	738
SinI	GGWCC	4 cut(s)	147, 188, 194, 719
Sse9I	AATT	8 cut(s)	14, 315, 502, 519, 605, 634, 658, 723
SsiI	CCGC	1 cut(s)	456
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	5 cut(s)	62, 336, 767, 777, 781
StyD4I	CCNGG	2 cut(s)	190, 196
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	586, 631
TaiI	ACGT	2 cut(s)	516, 657
TaqI	TCGA	1 cut(s)	492
TasI	AATT	8 cut(s)	14, 315, 502, 519, 605, 634, 658, 723
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	101, 451, 527
Tru1I	TTAA	2 cut(s)	117, 657
Tru9I	TTAA	2 cut(s)	117, 657
TscAI	CASTG	2 cut(s)	99, 439
TseFI	GTSAC	3 cut(s)	175, 555, 760
Tsp45I	GTSAC	3 cut(s)	175, 555, 760
TspDTI	ATGAA	6 cut(s)	58, 231, 282, 308, 464, 510
TspRI	CASTG	2 cut(s)	99, 439
VpaK11BI	GGWCC	4 cut(s)	147, 188, 194, 719
XapI	RAATTY	4 cut(s)	315, 502, 519, 634
XceI	RCATGY	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	5 cut(s)	62, 336, 767, 777, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.