Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

49202888 .. 49203652

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG234500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAATCCCGCTTTTCCAATGTGGCTCAGAAATCAGAGTTTCCTTGATGAAATAAATTTCTCAAATGTTGGAATTTCAGATGCAATACCTGATTGGTTTGGGAAAATGTCACAATCTTATTATGATTGGTGGTTTACTGTGGATCTCTCTGATAATCAATTGAGAGGGCGCCTTCCAAGCACAGTAAATTTTTCTGTTGGAGCATACATTAATTTGAATAACAACGTCTTGGAGGGTTCTCTTCCACTTTGGCAAAATGTAACGGAGCTCAGCTTGGCAGACAATAGATTTTCCGGACCAATTCCCTTGAGCATTGGCGAGGAGATGCCAAATATGGTGACCCTAGATCTTTCTAGGAATAACCTGATTGGTAGCATCCCCGCTTCCATAACAAAACTCAAGAAATTGGTTTCGCTTGATCTCTCAAGGAATCATCTGTCTGGAACCATCCCCAGGTTAGTAATGACTAGCACCATAGATTTTTCCAACAACAATCTATCTGGTCAAATTCTACGCTTCATGTGCTCACAACTATCTTCAGTGTCCTGGCTGAGATTAAGCAACAGCAATCTCTCAGGGGAGATTGACCAGTCCTTTCAAAACTGTACAAGACTGTTTACGCTTGATCTTGGAGGGAACAAATTGTCAGGGAGCATACCAGAGTGGATTGGAAAAAATCTGTATGTATTAATTCTCGGAGCCAACAGATTCACTGGAAGTATGATGATGATGAGGATGGTTCCGGATATAAAGGGCTGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

254

Amino Acids

28.42

Weight (kDa)

5.84

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	85 - 127	8.8e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	86 - 146	1.8e-08	Leucine rich repeat
LRR_4	PF12799	110 - 147	5.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccIII	TCCGGA	2 cut(s)	293, 742
AciI	CCGC	2 cut(s)	9, 381
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	4 cut(s)	55, 72, 187, 507
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	1 cut(s)	607
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgsI	TTSAA	2 cut(s)	217, 599
AjnI	CCWGG	2 cut(s)	452, 545
AluBI	AGCT	2 cut(s)	268, 273
AluI	AGCT	2 cut(s)	268, 273
Alw21I	GWGCWC	2 cut(s)	270, 527
AlwI	GGATC	1 cut(s)	150
Aor13HI	TCCGGA	2 cut(s)	293, 742
ApoI	RAATTY	4 cut(s)	55, 72, 187, 507
AseI	ATTAAT	2 cut(s)	210, 689
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	270, 527
BccI	CCATC	2 cut(s)	455, 730
BciT130I	CCWGG	2 cut(s)	454, 547
BfaI	CTAG	3 cut(s)	344, 354, 468
BfoI	RGCGCY	1 cut(s)	172
BglII	AGATCT	1 cut(s)	346
BlpI	GCTNAGC	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	454, 547
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	4 cut(s)	170, 445, 700, 741
BmrFI	CCNGG	2 cut(s)	454, 547
BmsI	GCATC	3 cut(s)	70, 315, 384
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	3 cut(s)	328, 383, 409
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	452
BsaWI	WCCGGW	2 cut(s)	293, 742
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	589, 718
BseAI	TCCGGA	2 cut(s)	293, 742
BseBI	CCWGG	2 cut(s)	454, 547
BseDI	CCNNGG	1 cut(s)	452
BseGI	GGATG	3 cut(s)	375, 447, 741
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMII	CTCAG	4 cut(s)	40, 283, 542, 588
BseNI	ACTGG	2 cut(s)	589, 718
BseRI	GAGGAG	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	2 cut(s)	270, 527
BsiSI	CCGG	2 cut(s)	294, 743
BslI	CCNNNNNNNGG	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	270, 527
Bsp13I	TCCGGA	2 cut(s)	293, 742
Bsp1407I	TGTACA	1 cut(s)	605
Bsp143I	GATC	4 cut(s)	142, 346, 418, 625
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	2 cut(s)	9, 381
BspCNI	CTCAG	4 cut(s)	39, 282, 543, 587
BspEI	TCCGGA	2 cut(s)	293, 742
BspLI	GGNNCC	4 cut(s)	170, 445, 700, 741
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	605
BsrI	ACTGG	2 cut(s)	589, 718
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	4 cut(s)	142, 346, 418, 625
BssNI	GRCGYC	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	454, 547
Bst4CI	ACNGT	4 cut(s)	139, 184, 605, 615
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	169
BstAUI	TGTACA	1 cut(s)	605
BstDEI	CTNAG	4 cut(s)	26, 269, 551, 574
BstEII	GGTNACC	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	375, 447, 741
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	4 cut(s)	145, 349, 421, 628
BstMBI	GATC	4 cut(s)	142, 346, 418, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 522
BstNI	CCWGG	2 cut(s)	454, 547
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	452, 545
BstX2I	RGATCY	2 cut(s)	142, 346
BstYI	RGATCY	2 cut(s)	142, 346
BtsCI	GGATG	3 cut(s)	375, 447, 741
BtsIMutI	CAGTG	2 cut(s)	546, 711
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	606
CviAII	CATG	1 cut(s)	520
CviJI	RGCY	6 cut(s)	25, 268, 273, 550, 701, 756
CviKI_1	RGCY	6 cut(s)	25, 268, 273, 550, 701, 756
CviQI	GTAC	1 cut(s)	606
DdeI	CTNAG	4 cut(s)	26, 269, 551, 574
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	4 cut(s)	144, 348, 420, 627
DpnII	GATC	4 cut(s)	142, 346, 418, 625
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	452, 545
EcoT38I	GRGCYC	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
FaeI	CATG	1 cut(s)	523
FatI	CATG	1 cut(s)	519
FauI	CCCGC	2 cut(s)	16, 388
FokI	GGATG	3 cut(s)	362, 434, 748
FriOI	GRGCYC	1 cut(s)	270
FspBI	CTAG	3 cut(s)	344, 354, 468
GlaI	GCGC	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	172
HapII	CCGG	2 cut(s)	294, 743
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	4, 430, 708
HpaII	CCGG	2 cut(s)	294, 743
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	135, 618
Hpy188I	TCNGA	5 cut(s)	29, 36, 79, 151, 698
Hpy188III	TCNNGA	4 cut(s)	294, 400, 441, 743
Hpy8I	GTNNAC	2 cut(s)	135, 618
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	4 cut(s)	139, 184, 605, 615
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 522
HpyF3I	CTNAG	4 cut(s)	26, 269, 551, 574
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	1 cut(s)	169
KasI	GGCGCC	1 cut(s)	168
Kpn2I	TCCGGA	2 cut(s)	293, 742
Kzo9I	GATC	4 cut(s)	142, 346, 418, 625
LmnI	GCTCC	4 cut(s)	200, 265, 651, 698
LweI	GCATC	3 cut(s)	70, 315, 384
MaeI	CTAG	3 cut(s)	344, 354, 468
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	108, 259, 337
MalI	GATC	4 cut(s)	144, 348, 420, 627
MboI	GATC	4 cut(s)	142, 346, 418, 625
MboII	GAAGA	2 cut(s)	233, 528
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	142, 346
MhlI	GDGCHC	2 cut(s)	270, 527
Mly113I	GGCGCC	1 cut(s)	169
MmeI	TCCRAC	3 cut(s)	49, 178, 510
MnlI	CCTC	5 cut(s)	158, 226, 313, 626, 726
MroI	TCCGGA	2 cut(s)	293, 742
MseI	TTAA	3 cut(s)	210, 557, 689
MspI	CCGG	2 cut(s)	294, 743
MspR9I	CCNGG	2 cut(s)	454, 547
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	454, 547
MwoI	GCNNNNNNNGC	2 cut(s)	177, 522
NarI	GGCGCC	1 cut(s)	169
NdeII	GATC	4 cut(s)	142, 346, 418, 625
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	4 cut(s)	170, 445, 700, 741
NmuCI	GTSAC	2 cut(s)	108, 337
PfeI	GAWTC	3 cut(s)	4, 430, 708
PluTI	GGCGCC	1 cut(s)	172
PshBI	ATTAAT	2 cut(s)	210, 689
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	452, 545
PspEI	GGTNACC	1 cut(s)	337
PspGI	CCWGG	2 cut(s)	452, 545
PspN4I	GGNNCC	4 cut(s)	170, 445, 700, 741
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	142, 346
RsaI	GTAC	1 cut(s)	607
RsaNI	GTAC	1 cut(s)	606
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	210, 557, 689
Sau3AI	GATC	4 cut(s)	142, 346, 418, 625
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	454, 547
SduI	GDGCHC	2 cut(s)	270, 527
SetI	ASST	6 cut(s)	91, 228, 270, 275, 366, 458
SfaNI	GCATC	3 cut(s)	70, 315, 384
SfoI	GGCGCC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	3 cut(s)	307, 398, 424
SmoI	CTYRAG	3 cut(s)	307, 398, 424
SsiI	CCGC	2 cut(s)	9, 381
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	3 cut(s)	344, 354, 468
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	452, 545
TaaI	ACNGT	4 cut(s)	139, 184, 605, 615
TaiI	ACGT	1 cut(s)	228
TatI	WGTACW	1 cut(s)	605
TfiI	GAWTC	3 cut(s)	4, 430, 708
Tru1I	TTAA	3 cut(s)	210, 557, 689
Tru9I	TTAA	3 cut(s)	210, 557, 689
TscAI	CASTG	2 cut(s)	546, 718
TseFI	GTSAC	2 cut(s)	108, 337
Tsp45I	GTSAC	2 cut(s)	108, 337
TspDTI	ATGAA	3 cut(s)	17, 63, 508
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	546, 718
VpaK11BI	GGWCC	1 cut(s)	296
VspI	ATTAAT	2 cut(s)	210, 689
XapI	RAATTY	4 cut(s)	55, 72, 187, 507
XspI	CTAG	3 cut(s)	344, 354, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.