Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003360.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

29150 .. 29743

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003360.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggatcggagaacgttcattctcatatttacttctcggagccaacatgttcactggaaatattcctcagcaaatatgcagcctctcctatgttcaggttttaaacctttctcaaaacatattatcaggctccaatccatccctagatgccttggtaatttggaacaaatgaaacatcggggctacttgctcaaggcactaccctcatttacgggtgtgcggtattttgatcttgagcatatggacttgagggtgaaaagattaggatatgaatataacaataagctcttgcctctcataaacagcattgacctgtcaagcaacaacttatcaggagaaataccggaggagataacaaatctcttgtacttgggtagcttaagtttatctaggaagcaattgacaggaaagataccacaaggctttggaagcttacagcagttggaaactcttgacctatcgattaatcatctttggggccccattcctgtaagcatgacttctatgactccattgagcaacttaaacttgtcatacaacaacttgtcgatctgggccaattccaacagccaaccaattccataccttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

197

Amino Acids

22.54

Weight (kDa)

9.54

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	220
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	46
AluBI	AGCT	3 cut(s)	286, 378, 432
AluI	AGCT	3 cut(s)	286, 378, 432
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	478, 555
ApaI	GGGCCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	79
AseI	ATTAAT	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	478, 479, 555
AsuHPI	GGTGA	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	2 cut(s)	144, 390
BfrI	CTTAAG	1 cut(s)	379
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BmgT120I	GGNCC	3 cut(s)	478, 479, 555
BmiI	GGNNCC	5 cut(s)	41, 131, 479, 480, 481
BmsI	GCATC	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	67
BpuEI	CTTGAG	3 cut(s)	176, 254, 268
Bsa29I	ATCGAT	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	480, 557
BshVI	ATCGAT	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	344
BsnI	GGCC	2 cut(s)	480, 557
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	3 cut(s)	4, 229, 549
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	2 cut(s)	480, 557
BspCNI	CTCAG	1 cut(s)	80
BspDI	ATCGAT	1 cut(s)	461
BspLI	GGNNCC	5 cut(s)	41, 131, 479, 480, 481
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	4, 229, 549
BssT1I	CCWWGG	1 cut(s)	151
BstAFI	CTTAAG	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	7, 232, 552
BstMBI	GATC	3 cut(s)	4, 229, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	480, 557
BsuTUI	ATCGAT	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	478, 479, 555
ClaI	ATCGAT	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	2 cut(s)	47, 496
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	3 cut(s)	6, 231, 551
DpnII	GATC	3 cut(s)	4, 229, 549
DraI	TTTAAA	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	482
EcoO109I	RGGNCCY	2 cut(s)	478, 479
EcoT14I	CCWWGG	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	50, 499
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FatI	CATG	2 cut(s)	46, 495
FauNDI	CATATG	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	2 cut(s)	144, 390
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	480, 557
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	2 cut(s)	50, 499
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	1 cut(s)	508
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	9, 39
Hpy188III	TCNNGA	3 cut(s)	233, 333, 452
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	50, 499
Kzo9I	GATC	3 cut(s)	4, 229, 549
LmnI	GCTCC	2 cut(s)	39, 135
LpnPI	CCDG	9 cut(s)	40, 81, 112, 318, 326, 357, 390, 501, 538
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	144, 390
MaeII	ACGT	1 cut(s)	14
MalI	GATC	3 cut(s)	6, 231, 551
MboI	GATC	3 cut(s)	4, 229, 549
MfeI	CAATTG	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	4 cut(s)	157, 398, 559, 576
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	2 cut(s)	423, 588
MnlI	CCTC	6 cut(s)	76, 93, 214, 243, 303, 340
MseI	TTAA	4 cut(s)	102, 380, 465, 524
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	429
NdeI	CATATG	1 cut(s)	240
NdeII	GATC	3 cut(s)	4, 229, 549
NlaIII	CATG	2 cut(s)	50, 499
NlaIV	GGNNCC	5 cut(s)	41, 131, 479, 480, 481
NspI	RCATGY	1 cut(s)	50
PciI	ACATGT	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PscI	ACATGT	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	465
Psp1406I	AACGTT	1 cut(s)	14
PspN4I	GGNNCC	5 cut(s)	41, 131, 479, 480, 481
PspOMI	GGGCCC	1 cut(s)	478
PspPI	GGNCC	3 cut(s)	478, 479, 555
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	4 cut(s)	102, 380, 465, 524
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	3 cut(s)	4, 229, 549
Sau96I	GGNCC	3 cut(s)	478, 479, 555
SchI	GAGTC	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	9 cut(s)	17, 100, 109, 288, 315, 380, 434, 459, 588
SfaNI	GCATC	1 cut(s)	137
SmlI	CTYRAG	4 cut(s)	191, 233, 247, 379
SmoI	CTYRAG	4 cut(s)	191, 233, 247, 379
Sse9I	AATT	4 cut(s)	157, 398, 559, 576
SsiI	CCGC	1 cut(s)	220
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	2 cut(s)	144, 390
StyI	CCWWGG	1 cut(s)	151
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	461, 548
TasI	AATT	4 cut(s)	157, 398, 559, 576
TatI	WGTACW	1 cut(s)	366
Tru1I	TTAA	4 cut(s)	102, 380, 465, 524
Tru9I	TTAA	4 cut(s)	102, 380, 465, 524
TscAI	CASTG	1 cut(s)	59
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	4 cut(s)	7, 185, 285, 578
TspRI	CASTG	1 cut(s)	59
Vha464I	CTTAAG	1 cut(s)	379
VspI	ATTAAT	1 cut(s)	465
XceI	RCATGY	1 cut(s)	50
XspI	CTAG	2 cut(s)	144, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.