Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

43476061 .. 43477563

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGATGTACAACAATTTGTTGAGGCTTTGTCTACATGTAGTAATAATAGTAGCTTAGAAGTCCTGGACCTGGCCTTCAACAACATGATGAATGACACCATCCCAGAAAGTATCGGACAACTTTCAGAGTTGAGAGCATCATTATTCTGGGAGTCTGGGGGTGGTTGGGAAGATGCAATACCTGATTGGTTTTGGAAAATGTCACAATCTTATTATGATTGGTGGTTTACTGCGGATCTCTCTGATAATCAATTGAGAGGGCGCCTTCCAGGCACAGTAAATTTTTCTGTTGGAGCATACGTTAATTTGAATAACAACTTCTTGGAGGGTTCTCTTCCACTTGTGCAAAATGTAACGGAGCTCAGCTTGTCAGACAATAGATTTTCCGGACCAATTCCCTTGAGCATTGGCGAGGAGATGCCAAATATGGTGACCCTAGATCTTTCTAGGAATAACCTGATTGGTAGCATCCCCGCTTCCATAACAAAACTCAAGAAATTGGTTTTGCTTGATCTCTCAAGGAATCATCTGTCTGGAACCATCCCCAGCATCACACTGGGATTCATTGTGGGATTTTGGGGTGTTTTTGGCAACGCCATCAACGACTATGAAGACGATGATGGCATTTCTGTATGCTTCTCCGGAGCGAAGCCGAACTACAACGCCCTGCTCTATTCTCTGAGGGACAGGGATGCCGTTGCCGTGCACAGCTATGAGATGGCGCTCATTTCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

246

Amino Acids

27.13

Weight (kDa)

4.25

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	116 - 158	3.1e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	117 - 177	3.1e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	32
AccIII	TCCGGA	2 cut(s)	386, 641
AciI	CCGC	2 cut(s)	233, 474
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	262
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	79, 310
AjnI	CCWGG	3 cut(s)	63, 69, 268
AluBI	AGCT	4 cut(s)	54, 361, 366, 711
AluI	AGCT	4 cut(s)	54, 361, 366, 711
Alw21I	GWGCWC	2 cut(s)	363, 708
Alw44I	GTGCAC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	243
Aor13HI	TCCGGA	2 cut(s)	386, 641
AoxI	GGCC	1 cut(s)	72
ApaLI	GTGCAC	1 cut(s)	704
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	2 cut(s)	264, 724
AspS9I	GGNCC	2 cut(s)	67, 389
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	2 cut(s)	67, 389
BaeGI	GKGCMC	1 cut(s)	708
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	363
BarI	GAAGNNNNNNTAC	4 cut(s)	162, 194, 641, 673
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	2 cut(s)	363, 708
BccI	CCATC	5 cut(s)	107, 548, 605, 614, 712
BceAI	ACGGC	2 cut(s)	680, 686
BciT130I	CCWGG	3 cut(s)	65, 71, 270
BfaI	CTAG	2 cut(s)	437, 447
BfoI	RGCGCY	2 cut(s)	265, 725
BglI	GCCNNNNNGGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	439
BlpI	GCTNAGC	1 cut(s)	362
Bme1390I	CCNGG	3 cut(s)	65, 71, 270
Bme18I	GGWCC	2 cut(s)	67, 389
BmgT120I	GGNCC	2 cut(s)	67, 389
BmiI	GGNNCC	2 cut(s)	263, 538
BmrFI	CCNGG	3 cut(s)	65, 71, 270
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	6 cut(s)	146, 163, 408, 477, 558, 682
BmuI	ACTGGG	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	3 cut(s)	421, 476, 502
BsaHI	GRCGYC	1 cut(s)	262
BsaWI	WCCGGW	2 cut(s)	386, 641
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	561
BseAI	TCCGGA	2 cut(s)	386, 641
BseBI	CCWGG	3 cut(s)	65, 71, 270
BseGI	GGATG	5 cut(s)	10, 99, 468, 540, 697
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	376, 671
BseNI	ACTGG	1 cut(s)	561
BseRI	GAGGAG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	708
BseYI	CCCAGC	1 cut(s)	545
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	261
BsiHKAI	GWGCWC	2 cut(s)	363, 708
BsiSI	CCGG	2 cut(s)	387, 642
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	698
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	363, 708
Bsp13I	TCCGGA	2 cut(s)	386, 641
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	235, 439, 511
Bsp1720I	GCTNAGC	1 cut(s)	362
BspACI	CCGC	2 cut(s)	233, 474
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	375, 672
BspEI	TCCGGA	2 cut(s)	386, 641
BspLI	GGNNCC	2 cut(s)	263, 538
BspPI	GGATC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	561
BssMI	GATC	3 cut(s)	235, 439, 511
BssNI	GRCGYC	1 cut(s)	262
Bst2UI	CCWGG	3 cut(s)	65, 71, 270
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	262
BstAUI	TGTACA	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	55, 362, 680
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	5 cut(s)	10, 99, 468, 540, 697
BstH2I	RGCGCY	2 cut(s)	265, 725
BstHHI	GCGC	2 cut(s)	264, 724
BstKTI	GATC	3 cut(s)	238, 442, 514
BstMBI	GATC	3 cut(s)	235, 439, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	3 cut(s)	65, 71, 270
BstNSI	RCATGY	1 cut(s)	39
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	63, 69, 268
BstSLI	GKGCMC	1 cut(s)	708
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	2 cut(s)	235, 439
BstYI	RGATCY	2 cut(s)	235, 439
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	5 cut(s)	10, 99, 468, 540, 697
BtsIMutI	CAGTG	1 cut(s)	554
CfoI	GCGC	2 cut(s)	264, 724
Cfr13I	GGNCC	2 cut(s)	67, 389
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	2 cut(s)	36, 85
CviJI	RGCY	7 cut(s)	26, 54, 74, 361, 366, 652, 711
CviKI_1	RGCY	7 cut(s)	26, 54, 74, 361, 366, 652, 711
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	55, 362, 680
DinI	GGCGCC	1 cut(s)	263
DpnI	GATC	3 cut(s)	237, 441, 513
DpnII	GATC	3 cut(s)	235, 439, 511
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	67, 389
Eco53kI	GAGCTC	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	430
EcoRII	CCWGG	3 cut(s)	63, 69, 268
EcoT38I	GRGCYC	1 cut(s)	363
EgeI	GGCGCC	1 cut(s)	263
EheI	GGCGCC	1 cut(s)	263
FaeI	CATG	2 cut(s)	39, 88
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	2 cut(s)	35, 84
FauI	CCCGC	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	32
FokI	GGATG	5 cut(s)	17, 86, 455, 527, 704
FriOI	GRGCYC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	437, 447
GlaI	GCGC	2 cut(s)	263, 723
GsaI	CCCAGC	1 cut(s)	549
HaeII	RGCGCY	2 cut(s)	265, 725
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	387, 642
HhaI	GCGC	2 cut(s)	264, 724
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	39, 88
Hin6I	GCGC	2 cut(s)	262, 722
HinP1I	GCGC	2 cut(s)	262, 722
HinfI	GANTC	3 cut(s)	152, 523, 561
HpaII	CCGG	2 cut(s)	387, 642
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	33, 228, 706
Hpy188I	TCNGA	5 cut(s)	116, 127, 244, 373, 681
Hpy188III	TCNNGA	4 cut(s)	387, 493, 534, 642
Hpy8I	GTNNAC	3 cut(s)	33, 228, 706
HpyAV	CCTTC	2 cut(s)	85, 275
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	176, 346, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	3 cut(s)	55, 362, 680
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	39, 88
HspAI	GCGC	2 cut(s)	262, 722
KasI	GGCGCC	1 cut(s)	261
Kpn2I	TCCGGA	2 cut(s)	386, 641
Kzo9I	GATC	3 cut(s)	235, 439, 511
LmnI	GCTCC	3 cut(s)	293, 358, 644
LweI	GCATC	6 cut(s)	146, 163, 408, 477, 558, 682
MaeI	CTAG	2 cut(s)	437, 447
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	201, 352, 430
MalI	GATC	3 cut(s)	237, 441, 513
MboI	GATC	3 cut(s)	235, 439, 511
MboII	GAAGA	3 cut(s)	182, 326, 623
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	2 cut(s)	235, 439
MhlI	GDGCHC	2 cut(s)	363, 708
MluCI	AATT	6 cut(s)	14, 251, 280, 304, 393, 497
Mly113I	GGCGCC	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	16, 251, 319, 406, 675
MroI	TCCGGA	2 cut(s)	386, 641
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	711
MspI	CCGG	2 cut(s)	387, 642
MspR9I	CCNGG	3 cut(s)	65, 71, 270
MunI	CAATTG	1 cut(s)	251
MvaI	CCWGG	3 cut(s)	65, 71, 270
MwoI	GCNNNNNNNGC	1 cut(s)	270
NarI	GGCGCC	1 cut(s)	262
NdeII	GATC	3 cut(s)	235, 439, 511
NlaIII	CATG	2 cut(s)	39, 88
NlaIV	GGNNCC	2 cut(s)	263, 538
NmuCI	GTSAC	2 cut(s)	201, 430
NspI	RCATGY	1 cut(s)	39
PciI	ACATGT	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	523, 561
PfoI	TCCNGGA	1 cut(s)	63
PleI	GAGTC	1 cut(s)	160
PluTI	GGCGCC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	63, 69, 268
PspEI	GGTNACC	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	3 cut(s)	63, 69, 268
PspN4I	GGNNCC	2 cut(s)	263, 538
PspPI	GGNCC	2 cut(s)	67, 389
PsuI	RGATCY	2 cut(s)	235, 439
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	235, 439, 511
Sau96I	GGNCC	2 cut(s)	67, 389
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	65, 71, 270
SduI	GDGCHC	2 cut(s)	363, 708
SetI	ASST	8 cut(s)	56, 72, 184, 303, 363, 368, 459, 713
SfaNI	GCATC	6 cut(s)	146, 163, 408, 477, 558, 682
SfoI	GGCGCC	1 cut(s)	263
SinI	GGWCC	2 cut(s)	67, 389
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	3 cut(s)	400, 491, 517
SmoI	CTYRAG	3 cut(s)	400, 491, 517
Sse9I	AATT	6 cut(s)	14, 251, 280, 304, 393, 497
SsiI	CCGC	2 cut(s)	233, 474
SspDI	GGCGCC	1 cut(s)	261
SspMI	CTAG	2 cut(s)	437, 447
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	63, 69, 268
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	303
TasI	AATT	6 cut(s)	14, 251, 280, 304, 393, 497
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	523, 561
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	2 cut(s)	201, 430
Tsp45I	GTSAC	2 cut(s)	201, 430
TspDTI	ATGAA	3 cut(s)	104, 553, 624
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	561
VneI	GTGCAC	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	67, 389
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	2 cut(s)	437, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.