RLG00000028204

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
19983408 .. 19984143
736 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028204

Sequence Viewer

Length: 579 bp
ATGACAACAGGAGATGGCTTGCTTAGGAACTGGCTGACGAACCTGACGTCCTCTGGGGATTTTTATGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGCTGATATCATAGGACTCATTAAAAAGTTAGACCTGTCAAGTAATAATCTATGGGGAGAAATACCAGAAGAGGTCCAAAATCTCATGGCTTTGGGTAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATGAGTTAGAAGCACTTGACCTCTCTAATAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTTCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCTCACCTTCAATGACCCAACCTCATTTGAAGGAAACTCAGGACTTTGCGGACCTCCATTGCCAACCCAATGCAGTTCAGTTAATGATCCAACTGTGAAGGTTGACGAAGATGAAGAAGATAATGACTCGTTTATTGAGGAGTTTAAGGGCTTGGAAGATGGTTGA

Protein Analysis

193

Amino Acids

20.99

Weight (kDa)

4.17

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 47 - 104 1.6e-08 Leucine rich repeat
LRR_14 PF23598 47 - 123 1e-07 Leucine-rich repeat region
LRR_8 PF13855 90 - 128 1e-05 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
AciI CCGC 1 cut(s) 462
AclWI GGATC 2 cut(s) 62, 494
AcsI RAATTY 1 cut(s) 364
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 6 cut(s) 220, 330, 364, 376, 424, 443
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 2 cut(s) 216, 270
AluI AGCT 2 cut(s) 216, 270
AlwI GGATC 2 cut(s) 62, 494
AoxI GGCC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 364
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspS9I GGNCC 3 cut(s) 190, 389, 464
AsuHPI GGTGA 1 cut(s) 409
AvaII GGWCC 2 cut(s) 190, 464
BccI CCATC 4 cut(s) 8, 315, 406, 566
Bme18I GGWCC 2 cut(s) 190, 464
BmgT120I GGNCC 3 cut(s) 190, 389, 464
Bpu10I CCTNAGC 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 566
BshFI GGCC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 67, 499
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 464
BspPI GGATC 2 cut(s) 62, 494
BsrDI GCAATG 1 cut(s) 470
BsrI ACTGG 1 cut(s) 35
BssMI GATC 2 cut(s) 67, 499
BssNI GRCGYC 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 508
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 3 cut(s) 23, 353, 451
BstKTI GATC 2 cut(s) 70, 502
BstMBI GATC 2 cut(s) 67, 499
BsuRI GGCC 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 3 cut(s) 190, 389, 464
CviAII CATG 3 cut(s) 202, 275, 334
CviJI RGCY 8 cut(s) 18, 34, 206, 216, 270, 391, 404, 564
CviKI_1 RGCY 8 cut(s) 18, 34, 206, 216, 270, 391, 404, 564
DdeI CTNAG 3 cut(s) 23, 353, 451
DpnI GATC 2 cut(s) 69, 501
DpnII GATC 2 cut(s) 67, 499
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 190, 464
EcoRV GATATC 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 78
FaeI CATG 3 cut(s) 205, 278, 337
FatI CATG 3 cut(s) 201, 274, 333
HaeIII GGCC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 3 cut(s) 205, 278, 337
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 2 cut(s) 132, 539
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 1 cut(s) 453
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 4 cut(s) 336, 430, 437, 505
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 76, 486
HpyF3I CTNAG 3 cut(s) 23, 353, 451
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 3 cut(s) 205, 278, 337
Kzo9I GATC 2 cut(s) 67, 499
LpnPI CCDG 9 cut(s) 16, 39, 56, 164, 195, 228, 267, 372, 438
MaeII ACGT 1 cut(s) 47
MalI GATC 2 cut(s) 69, 501
MboI GATC 2 cut(s) 67, 499
MboII GAAGA 4 cut(s) 197, 533, 539, 542
MluCI AATT 4 cut(s) 321, 359, 364, 410
MlyI GAGTC 2 cut(s) 126, 533
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 9 cut(s) 61, 181, 250, 305, 349, 425, 445, 477, 544
Mph1103I ATGCAT 1 cut(s) 78
MseI TTAA 5 cut(s) 86, 138, 320, 495, 558
NdeII GATC 2 cut(s) 67, 499
NlaIII CATG 3 cut(s) 205, 278, 337
NsiI ATGCAT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PleI GAGTC 2 cut(s) 126, 533
PpsI GAGTC 2 cut(s) 126, 533
PspPI GGNCC 3 cut(s) 190, 389, 464
SaqAI TTAA 5 cut(s) 86, 138, 320, 495, 558
Sau3AI GATC 2 cut(s) 67, 499
Sau96I GGNCC 3 cut(s) 190, 389, 464
SchI GAGTC 2 cut(s) 126, 533
SinI GGWCC 2 cut(s) 190, 464
Sse9I AATT 4 cut(s) 321, 359, 364, 410
SsiI CCGC 1 cut(s) 462
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 81
TasI AATT 4 cut(s) 321, 359, 364, 410
Tru1I TTAA 5 cut(s) 86, 138, 320, 495, 558
Tru9I TTAA 5 cut(s) 86, 138, 320, 495, 558
TspDTI ATGAA 2 cut(s) 123, 540
VpaK11BI GGWCC 2 cut(s) 190, 464
XapI RAATTY 1 cut(s) 364
ZraI GACGTC 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.