Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012562.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

11302 .. 13341

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012562.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggtgaaccggtgggatatttgctgcgagatgtatggagcttccggtggccggttcggtaagttttcggccggttcttggggttggaccgccggttctggactcctgagattgattcctttaaggtgtgaggtggaggcagaaaaggcttcaacgatttgtattcagattcaagccacaacaatatttgccaactccaatactgtcaatgatgagaggtccaatgtcgcttgcattgaggaagagaggaaggcccttcttgaattcaagcaaggtcttcaagatcctttgcttgcgcttcattcttgggttggcaaagactgctgcaactggcatggcatagtctgcaacaaccatacagagcttgcacctttcttcaaactcaatttccggtccacttccgacatggataggaaatctgccacatttagagttgttggacctttcctacaactcaaaaatgaatggaactattccagaaagcattggacaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

8.13

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	2 cut(s)	49, 69
AcsI	RAATTY	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	51, 78
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	6 cut(s)	153, 173, 263, 268, 281, 379
AloI	GAACNNNNNNTCC	2 cut(s)	79, 111
AluBI	AGCT	2 cut(s)	41, 364
AluI	AGCT	2 cut(s)	41, 364
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	3 cut(s)	49, 69, 252
ApeKI	GCWGC	2 cut(s)	24, 324
ApoI	RAATTY	1 cut(s)	263
AsiGI	ACCGGT	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	5 cut(s)	87, 219, 253, 393, 440
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	4 cut(s)	87, 219, 393, 440
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	11, 311
BisI	GCNGC	2 cut(s)	25, 325
BlsI	GCNGC	2 cut(s)	26, 326
Bme18I	GGWCC	4 cut(s)	87, 219, 393, 440
BmgT120I	GGNCC	5 cut(s)	87, 219, 253, 393, 440
BpiI	GAAGAC	1 cut(s)	269
BsaWI	WCCGGW	3 cut(s)	9, 44, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 78
Bse118I	RCCGGY	4 cut(s)	9, 51, 71, 92
Bse1I	ACTGG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	51, 78
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	11, 311
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	51, 71, 254
BshTI	ACCGGT	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	6 cut(s)	10, 45, 52, 72, 93, 391
BslI	CCNNNNNNNGG	2 cut(s)	51, 78
BsnI	GGCC	3 cut(s)	51, 71, 254
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	3 cut(s)	51, 71, 254
BspCNI	CTCAG	1 cut(s)	99
BspPI	GGATC	1 cut(s)	278
BsrFI	RCCGGY	4 cut(s)	9, 51, 71, 92
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	4 cut(s)	9, 51, 71, 92
BssMI	GATC	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	2 cut(s)	321, 345
BstC8I	GCNNGC	3 cut(s)	232, 294, 366
BstDEI	CTNAG	2 cut(s)	107, 495
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 321, 345
BstV1I	GCAGC	2 cut(s)	11, 311
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	51, 71, 254
Cac8I	GCNNGC	3 cut(s)	232, 294, 366
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	4 cut(s)	9, 51, 71, 92
Cfr13I	GGNCC	5 cut(s)	87, 219, 253, 393, 440
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	2 cut(s)	335, 406
CviJI	RGCY	7 cut(s)	41, 51, 71, 149, 176, 254, 364
CviKI_1	RGCY	7 cut(s)	41, 51, 71, 149, 176, 254, 364
DdeI	CTNAG	2 cut(s)	107, 495
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	49, 69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EclXI	CGGCCG	1 cut(s)	69
Eco47I	GGWCC	4 cut(s)	87, 219, 393, 440
Eco52I	CGGCCG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	263
FaeI	CATG	2 cut(s)	338, 409
FaiI	YATR	5 cut(s)	36, 336, 341, 357, 407
FatI	CATG	2 cut(s)	334, 405
Fnu4HI	GCNGC	2 cut(s)	25, 325
Fsp4HI	GCNGC	2 cut(s)	25, 325
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	2 cut(s)	25, 325
HaeIII	GGCC	3 cut(s)	51, 71, 254
HapII	CCGG	6 cut(s)	10, 45, 52, 72, 93, 391
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	338, 409
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	3 cut(s)	102, 115, 169
HpaII	CCGG	6 cut(s)	10, 45, 52, 72, 93, 391
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	7, 396
Hpy188I	TCNGA	2 cut(s)	168, 403
Hpy188III	TCNNGA	5 cut(s)	99, 106, 260, 281, 477
Hpy8I	GTNNAC	2 cut(s)	7, 396
HpyAV	CCTTC	2 cut(s)	244, 266
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	234, 327, 348, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 321, 345
HpyF3I	CTNAG	2 cut(s)	107, 495
Hsp92II	CATG	2 cut(s)	338, 409
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	2 cut(s)	11, 311
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	3 cut(s)	254, 269, 367
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	2 cut(s)	263, 385
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	3 cut(s)	65, 418, 426
MnlI	CCTC	5 cut(s)	124, 130, 210, 232, 240
MseI	TTAA	1 cut(s)	122
MspI	CCGG	6 cut(s)	10, 45, 52, 72, 93, 391
MwoI	GCNNNNNNNGC	3 cut(s)	146, 321, 345
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	338, 409
PfeI	GAWTC	2 cut(s)	115, 169
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	2 cut(s)	26, 326
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PspPI	GGNCC	5 cut(s)	87, 219, 253, 393, 440
PsuI	RGATCY	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	2 cut(s)	25, 325
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	5 cut(s)	87, 219, 253, 393, 440
SchI	GAGTC	1 cut(s)	96
SetI	ASST	8 cut(s)	43, 128, 135, 221, 277, 366, 373, 445
SinI	GGWCC	4 cut(s)	87, 219, 393, 440
Sse9I	AATT	2 cut(s)	263, 385
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	2 cut(s)	263, 385
TfiI	GAWTC	2 cut(s)	115, 169
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseI	GCWGC	2 cut(s)	24, 324
TspDTI	ATGAA	2 cut(s)	290, 477
VpaK11BI	GGWCC	4 cut(s)	87, 219, 393, 440
XapI	RAATTY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.