Rorug03G0109600

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
8792220 .. 8794268
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0109600.1

Sequence Viewer

Length: 840 bp
ATGTCGAAGTTGGGGACTGTACCTATCGATTGCTACAACAGTGGATATGGCAATCAGATTGAAACAAAATTTGCAAAGGAAACTGCTCAGCTTAATCCACCACATAGATTTGTGCCATGGCTGGTTGTCGATAATAAACCACTTGCAGAGGACTACGGAAATTTTATGGCCTATATCTGTAAGGCATACAAAGGAAAATCTCCAGAAGCTTGCAGATCAATTCGCTACAAGACTGAATCAATTGGAAATGAAAAATTGATTCCTCAAAAAGTTACTCTCTCGCTTTACTATGAGTCTTTGAGCACATCTTGTGCAACCTTCATCGTCAAGAATCTTTCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTCTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGAATTGCTACAACAGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATGAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCATGGCTGGTTCTGAACGATCAACCTATTGGAAATGACTATGAAAATTTTGCTGGCTATGTGTGCAAGGCTTACAAAGGTAACATTGTACCCATGGCATGTCAATCTGTGCATTCGAAGCAGAAGACAGAATAG

Protein Analysis

279

Amino Acids

31.52

Weight (kDa)

7.9

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 93 - 197 3.2e-25 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 5 cut(s) 68, 160, 466, 539, 751
AcuI CTGAAG 1 cut(s) 568
AfaI GTAC 3 cut(s) 21, 705, 795
AgsI TTSAA 5 cut(s) 62, 466, 619, 636, 653
AluBI AGCT 3 cut(s) 91, 209, 649
AluI AGCT 3 cut(s) 91, 209, 649
Alw21I GWGCWC 1 cut(s) 305
AoxI GGCC 3 cut(s) 168, 446, 546
ApoI RAATTY 5 cut(s) 68, 160, 466, 539, 751
AspLEI GCGC 1 cut(s) 485
AsuHPI GGTGA 2 cut(s) 355, 407
AsuII TTCGAA 1 cut(s) 821
BalI TGGCCA 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 836
Bbv12I GWGCWC 1 cut(s) 305
BccI CCATC 1 cut(s) 446
BlpI GCTNAGC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 387
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 836
BpmI CTGGAG 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 821
Bsa29I ATCGAT 2 cut(s) 27, 489
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 116, 389, 707, 798
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 673
Bse8I GATNNNNATC 1 cut(s) 354
BseCI ATCGAT 2 cut(s) 27, 489
BseDI CCNNGG 4 cut(s) 116, 389, 707, 798
BseJI GATNNNNATC 1 cut(s) 354
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 2 cut(s) 101, 391
BseNI ACTGG 1 cut(s) 387
BshFI GGCC 3 cut(s) 170, 448, 548
BshVI ATCGAT 2 cut(s) 27, 489
BsiHKAI GWGCWC 1 cut(s) 305
BslFI GGGAC 2 cut(s) 28, 609
BsmFI GGGAC 2 cut(s) 28, 609
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 3 cut(s) 170, 448, 548
Bsp119I TTCGAA 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 3 cut(s) 215, 355, 724
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp19I CCATGG 3 cut(s) 116, 707, 798
BspACI CCGC 1 cut(s) 429
BspANI GGCC 3 cut(s) 170, 448, 548
BspCNI CTCAG 2 cut(s) 100, 390
BspDI ATCGAT 2 cut(s) 27, 489
BspLI GGNNCC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 821
BsrDI GCAATG 1 cut(s) 673
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 4 cut(s) 116, 389, 707, 798
BssMI GATC 3 cut(s) 215, 355, 724
BssT1I CCWWGG 4 cut(s) 116, 389, 707, 798
Bst4CI ACNGT 3 cut(s) 19, 41, 632
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 3 cut(s) 211, 481, 760
BstDEI CTNAG 4 cut(s) 87, 339, 377, 603
BstDSI CCRYGG 3 cut(s) 116, 707, 798
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 3 cut(s) 218, 358, 727
BstMBI GATC 3 cut(s) 215, 355, 724
BstMWI GCNNNNNNNGC 2 cut(s) 768, 823
BstNSI RCATGY 2 cut(s) 483, 807
BstV2I GAAGAC 1 cut(s) 836
Bsu15I ATCGAT 2 cut(s) 27, 489
BsuRI GGCC 3 cut(s) 170, 448, 548
BsuTUI ATCGAT 2 cut(s) 27, 489
BtgI CCRYGG 3 cut(s) 116, 707, 798
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 3 cut(s) 211, 481, 760
CfoI GCGC 1 cut(s) 485
ClaI ATCGAT 2 cut(s) 27, 489
Csp6I GTAC 3 cut(s) 20, 704, 794
CviAII CATG 7 cut(s) 117, 480, 500, 676, 708, 799, 804
CviQI GTAC 3 cut(s) 20, 704, 794
DdeI CTNAG 4 cut(s) 87, 339, 377, 603
DpnI GATC 3 cut(s) 217, 357, 726
DpnII GATC 3 cut(s) 215, 355, 724
EaeI YGGCCR 1 cut(s) 546
Eco130I CCWWGG 4 cut(s) 116, 389, 707, 798
Eco57I CTGAAG 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 466
EcoT14I CCWWGG 4 cut(s) 116, 389, 707, 798
EcoT22I ATGCAT 2 cut(s) 403, 501
ErhI CCWWGG 4 cut(s) 116, 389, 707, 798
FaeI CATG 7 cut(s) 120, 483, 503, 679, 711, 802, 807
FaqI GGGAC 2 cut(s) 28, 609
FatI CATG 7 cut(s) 116, 479, 499, 675, 707, 798, 803
GlaI GCGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 3 cut(s) 170, 448, 548
HhaI GCGC 1 cut(s) 485
Hin1II CATG 7 cut(s) 120, 483, 503, 679, 711, 802, 807
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HindIII AAGCTT 2 cut(s) 207, 647
HinfI GANTC 4 cut(s) 236, 259, 293, 331
HphI GGTGA 2 cut(s) 355, 407
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 3 cut(s) 57, 380, 720
Hpy188III TCNNGA 3 cut(s) 203, 328, 473
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 2 cut(s) 328, 552
HpyCH4III ACNGT 3 cut(s) 19, 41, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 768, 823
HpyF3I CTNAG 4 cut(s) 87, 339, 377, 603
Hsp92II CATG 7 cut(s) 120, 483, 503, 679, 711, 802, 807
HspAI GCGC 1 cut(s) 483
Kzo9I GATC 3 cut(s) 215, 355, 724
LpnPI CCDG 8 cut(s) 107, 216, 368, 458, 462, 530, 698, 744
LweI GCATC 1 cut(s) 388
MaeIII GTNAC 2 cut(s) 271, 785
MalI GATC 3 cut(s) 217, 357, 726
MboI GATC 3 cut(s) 215, 355, 724
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 9 cut(s) 68, 160, 219, 240, 254, 466, 539, 619, 751
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 5 cut(s) 142, 273, 547, 692, 702
Mox20I TGGCCA 1 cut(s) 548
Mph1103I ATGCAT 2 cut(s) 403, 501
MscI TGGCCA 1 cut(s) 548
MseI TTAA 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 548
MunI CAATTG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 817
MwoI GCNNNNNNNGC 2 cut(s) 768, 823
NcoI CCATGG 3 cut(s) 116, 707, 798
NdeII GATC 3 cut(s) 215, 355, 724
NlaIII CATG 7 cut(s) 120, 483, 503, 679, 711, 802, 807
NlaIV GGNNCC 1 cut(s) 387
NsiI ATGCAT 2 cut(s) 403, 501
NspI RCATGY 2 cut(s) 483, 807
NspV TTCGAA 1 cut(s) 821
PaeI GCATGC 1 cut(s) 483
PctI GAATGC 1 cut(s) 817
PfeI GAWTC 3 cut(s) 236, 259, 331
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 387
RsaI GTAC 3 cut(s) 21, 705, 795
RsaNI GTAC 3 cut(s) 20, 704, 794
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 3 cut(s) 215, 355, 724
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 1 cut(s) 305
SetI ASST 9 cut(s) 25, 93, 211, 320, 651, 684, 694, 733, 787
SfaNI GCATC 1 cut(s) 388
SfuI TTCGAA 1 cut(s) 821
SphI GCATGC 1 cut(s) 483
Sse9I AATT 9 cut(s) 68, 160, 219, 240, 254, 466, 539, 619, 751
SsiI CCGC 1 cut(s) 429
StyI CCWWGG 4 cut(s) 116, 389, 707, 798
TaaI ACNGT 3 cut(s) 19, 41, 632
TaqI TCGA 7 cut(s) 5, 27, 129, 348, 416, 489, 821
TasI AATT 9 cut(s) 68, 160, 219, 240, 254, 466, 539, 619, 751
TfiI GAWTC 3 cut(s) 236, 259, 331
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 5 cut(s) 264, 310, 579, 684, 762
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 46
XapI RAATTY 5 cut(s) 68, 160, 466, 539, 751
XceI RCATGY 2 cut(s) 483, 807
Zsp2I ATGCAT 2 cut(s) 403, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.