Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012562.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

97276 .. 98696

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012562.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atggcttgccacaaagtagcagctgcttcctttcaacttctttctcttgttagtttccttcttttcttaagtccagaagccacaacaatatttgccaactccaatactgtcaatgatgagaggtccaatgtggcttgcattgaggaagagaggaaggccctccttgaattcaagcaaggtcttcaagatcctttgcttgcccttcattcttgggttggcaaagactgctgcaactggcatggcatagtctgcaacaaccaaaccggtaacatcatcgagcttcgtcttttggatacacaaatctctgaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcaaatttgcagaacttggacctttcttcaaactcaatttccggtccacttccgacatcgatcggaaatctttcgaatttgcagaccctgtaccttttttcaaactcaatttccggtccacttccgacatcgatcggaagtctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

411

Amino Acids

47.82

Weight (kDa)

9.7

Isoelectric Point (pI)

23.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	1179
AflII	CTTAAG	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	263
AluBI	AGCT	2 cut(s)	23, 280
AluI	AGCT	2 cut(s)	23, 280
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	1175
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	20, 23, 228
AsiGI	ACCGGT	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	1161
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	10, 32, 215
BciVI	GTATCC	1 cut(s)	286
BfrI	CTTAAG	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	21, 24, 229
BlsI	GCNGC	3 cut(s)	22, 25, 230
BpiI	GAAGAC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	1161
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	10, 32, 215
BshFI	GGCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	263
BsnI	GGCC	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	1161
BspANI	GGCC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	1161
BspTI	CTTAAG	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	67
BstAPI	GCANNNNNTGC	2 cut(s)	225, 249
BstBI	TTCGAA	1 cut(s)	1161
BstC8I	GCNNGC	3 cut(s)	7, 136, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 249
BstV1I	GCAGC	3 cut(s)	10, 32, 215
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	158
Cac8I	GCNNGC	3 cut(s)	7, 136, 198
CaiI	CAGNNNCTG	1 cut(s)	1175
Cfr10I	RCCGGY	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	1178
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	6 cut(s)	5, 23, 80, 134, 158, 280
CviKI_1	RGCY	6 cut(s)	5, 23, 80, 134, 158, 280
CviQI	GTAC	1 cut(s)	1178
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	242
FaiI	YATR	2 cut(s)	240, 245
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	21, 24, 229
Fsp4HI	GCNGC	3 cut(s)	21, 24, 229
GluI	GCNGC	3 cut(s)	21, 24, 229
HaeIII	GGCC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	74, 185
HpyAV	CCTTC	3 cut(s)	68, 148, 212
HpyCH4III	ACNGT	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 249
Hsp92II	CATG	1 cut(s)	242
Lsp1109I	GCAGC	3 cut(s)	10, 32, 215
MaeIII	GTNAC	1 cut(s)	266
MflI	RGATCY	1 cut(s)	187
MnlI	CCTC	4 cut(s)	114, 136, 144, 170
MseI	TTAA	2 cut(s)	68, 1234
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	225, 249
NlaIII	CATG	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	1161
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	22, 25, 230
PstNI	CAGNNNCTG	1 cut(s)	1175
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	1179
RsaNI	GTAC	1 cut(s)	1178
SaqAI	TTAA	2 cut(s)	68, 1234
SatI	GCNGC	3 cut(s)	21, 24, 229
SfuI	TTCGAA	1 cut(s)	1161
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SspI	AATATT	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	68, 1234
Tru9I	TTAA	2 cut(s)	68, 1234
TseI	GCWGC	3 cut(s)	20, 23, 228
TspDTI	ATGAA	1 cut(s)	194
Vha464I	CTTAAG	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.