Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

21293019 .. 21305895

Gene Structure 12877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGAGGAGGCATCCACTATATAGTTATGTTTCTTTTGGGCTCTATAGTTATGGTTTGTGTTGCTTTAGAACGCTCAGTGCGGCTTGCATTGAGGAGGAGAGGAAGGCCCTCCTTGAATTCAAAAAAGGCCCTTTCGAAGTGCTTCCTTTTTGGGATGGGGAAGACTGTTGCATATGGGATGGCATAGCCTACAGTAACCAAACAGGCCATGTCATCTCGAGTCTAGTGGTACCTACACACTATTCCTCCGTTAGCCCCTATGGTACCTCCGTCCATTATTCCGTTAAAAATGCCTACGTGGCGGCCATTTTGGAGGGTTCCCTTCCACTTTGGCCAAATGTAACAGATCTCATCTTGGCAAGCAATAGATTTTTAGGACCAATACCCTTGAACATTGGCAATCAGATGCCAATGTTGTCCAATCTAGATCTTTCAAGAAATAATATACACGGTACTATTCCTTTTTTTTTTAATAGCACCGAGTTGCAGACTCTTGACCTCTCAAGGAATTATTTATCAGGAAGCATTCCTATGGATTGGTCGGGTTTAGAAGGCCTCATAGACCTAGATCTTTCCAATAACAATCTATCTGGTCAAATTCCCTTCACTATGTGCTCACAACTACCAATGCTTGAATGGTTGAGATTAAGCAACAACAATTTTTCCGGGGAGCTTCCAATGTTCTTGCAGTATTGTCAATGGCTGGGTGCACTGGATCTTTCAAGAAACAAATTCTCTGGGGCATTACCAGAGTCGATTGGAGAATGCCTACAATCATTGTCATATCTACTTCTAGGAGCCAACAGGCTTGCTGGAAATATACCTCAACAATTATGCGGTCTCTCCAATCTTCAGGTTTTAGACCTTTCTCATAATAATCTATCAGGTTCCCTCCCTAGATGTCTTGGCAAGTTGGAAAAACTGACAAAAGTAGGTGGTTGGCCAACCTTTGTCATTCCTATGCATATGGACTTAAATGTCAAGGGAGTAGAATACGATTATACTTCTGATCTTGTAGGACTCATATACAAGATAGACCTATCAAGTAATAACTTATGGGGAGAAATACCGAAGGAGATAACAAATCTCACCGCCTTGGGTAGTTTGAATTTGTCACATAACCGTTTGACTGGAAAGATACCAGATGGTATCGGAAGCTTACGTCTGTTAGAGGCTCTTGACCTCTCTAGTAATCATCTACGGGGTCCAATTCCTTCAAGCATGACCTCCATGACTTCACTAAGCAAATTGAACTTGTCACATAACAACTTTTCTGGGCCAATTCCATCAACCAACCAGTTCCTTACCTTCAACGATCCAACCTCATTTGGAGGAAACTCAGGGCTTTTTGGGCATCCATTGCTAACCGAATGCAGCTCATCCTCCAATAATGATAAGGATCCGGAGTATGATCGATGTCTACGAGACTACGGAAACTTCTTGAGACTGAGTGAGTTGAACCTCAAATGGAAATTGAAGTTTTTTGTATTTTGGGAAGAATGGGGGAAGGTTATGGCGGAGCTGCGGAGAGTTTTGAATGGATTGCAGTTTAATCCCAGAGCTATAGTGTTATGGTTCTTTAATAAAAGAAGATTAAAAATTGTCCTGCCTAGAGGAAAAGTATCGAGTATGAATGTTTTTCCCAGTGGCAAATTTGTCTACCCAATCAAAAACCTTCTTTTGAAATATCAACGTTCTCTCTCCTTTCCCAGGCAACGAGCTATCATCAGATTTTCAAAGAGACACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

583

Amino Acids

65.54

Weight (kDa)

8.59

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	139 - 196	8.2e-08	Leucine rich repeat
LRR_8	PF13855	161 - 221	2e-08	Leucine rich repeat
LRR_14	PF23598	189 - 309	4.6e-07	Leucine-rich repeat region
LRR_8	PF13855	259 - 309	5.9e-06	Leucine rich repeat
LRR_8	PF13855	343 - 400	1.9e-08	Leucine rich repeat
LRR_14	PF23598	347 - 421	1e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	977
Acc65I	GGTACC	2 cut(s)	229, 263
AccB1I	GGYRCC	2 cut(s)	229, 263
AccI	GTMKAC	2 cut(s)	1420, 1659
AccIII	TCCGGA	1 cut(s)	1402
AciI	CCGC	6 cut(s)	80, 302, 837, 1092, 1517, 1525
AclI	AACGTT	1 cut(s)	1693
AclWI	GGATC	4 cut(s)	723, 1310, 1394, 1407
AcoI	YGGCCR	3 cut(s)	303, 332, 941
AcsI	RAATTY	5 cut(s)	116, 597, 731, 1108, 1652
AcuI	CTGAAG	1 cut(s)	836
AdeI	CACNNNGTG	1 cut(s)	612
AfaI	GTAC	3 cut(s)	231, 265, 454
AfiI	CCNNNNNNNGG	1 cut(s)	1710
AjnI	CCWGG	1 cut(s)	1709
AluBI	AGCT	6 cut(s)	673, 1158, 1377, 1522, 1562, 1721
AluI	AGCT	6 cut(s)	673, 1158, 1377, 1522, 1562, 1721
Alw21I	GWGCWC	2 cut(s)	617, 712
Alw26I	GTCTC	4 cut(s)	845, 1419, 1438, 1735
Alw44I	GTGCAC	1 cut(s)	708
AlwI	GGATC	4 cut(s)	723, 1310, 1394, 1407
Ama87I	CYCGRG	1 cut(s)	217
Aor13HI	TCCGGA	1 cut(s)	1402
AoxI	GGCC	8 cut(s)	105, 127, 205, 303, 332, 553, 941, 1277
ApaLI	GTGCAC	1 cut(s)	708
ApeKI	GCWGC	2 cut(s)	1374, 1522
ApoI	RAATTY	5 cut(s)	116, 597, 731, 1108, 1652
Asp700I	GAANNNNTTC	1 cut(s)	141
Asp718I	GGTACC	2 cut(s)	229, 263
AspS9I	GGNCC	5 cut(s)	106, 128, 377, 1205, 1277
AsuC2I	CCSGG	1 cut(s)	667
AsuHPI	GGTGA	1 cut(s)	1081
AsuII	TTCGAA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	377, 1205
BaeGI	GKGCMC	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BalI	TGGCCA	2 cut(s)	334, 943
BamHI	GGATCC	1 cut(s)	1399
BanI	GGYRCC	2 cut(s)	229, 263
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	617, 712
BbvI	GCAGC	2 cut(s)	1386, 1509
BccI	CCATC	4 cut(s)	149, 173, 1139, 1294
BciT130I	CCWGG	1 cut(s)	1711
BcnI	CCSGG	1 cut(s)	667
BcoDI	GTCTC	4 cut(s)	845, 1419, 1438, 1735
BfaI	CTAG	7 cut(s)	224, 425, 566, 794, 897, 1188, 1611
BfmI	CTRYAG	3 cut(s)	43, 190, 1563
BglI	GCCNNNNNGGC	1 cut(s)	299
BglII	AGATCT	3 cut(s)	346, 427, 568
BisI	GCNGC	4 cut(s)	81, 303, 1375, 1523
BlsI	GCNGC	4 cut(s)	82, 304, 1376, 1524
Bme1390I	CCNGG	2 cut(s)	667, 1711
Bme18I	GGWCC	2 cut(s)	377, 1205
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	5 cut(s)	106, 128, 377, 1205, 1277
BmiI	GGNNCC	7 cut(s)	231, 265, 319, 799, 889, 1206, 1401
BmrFI	CCNGG	2 cut(s)	667, 1711
BmrI	ACTGGG	1 cut(s)	1638
BmsI	GCATC	3 cut(s)	19, 396, 1363
BmuI	ACTGGG	1 cut(s)	1638
BpiI	GAAGAC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	487, 1462
BpuMI	CCSGG	1 cut(s)	667
Bsa29I	ATCGAT	1 cut(s)	1414
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	1398
BsaI	GGTCTC	1 cut(s)	845
BsaJI	CCNNGG	3 cut(s)	666, 1095, 1709
BsaWI	WCCGGW	1 cut(s)	1402
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	1710
Bse1I	ACTGG	4 cut(s)	717, 1135, 1297, 1644
Bse3DI	GCAATG	1 cut(s)	1358
Bse8I	GATNNNNATC	1 cut(s)	1398
BseAI	TCCGGA	1 cut(s)	1402
BseBI	CCWGG	1 cut(s)	1711
BseCI	ATCGAT	1 cut(s)	1414
BseDI	CCNNGG	3 cut(s)	666, 1095, 1709
BseGI	GGATG	5 cut(s)	10, 160, 184, 1354, 1379
BseJI	GATNNNNATC	1 cut(s)	1398
BseLI	CCNNNNNNNGG	1 cut(s)	1710
BseMI	GCAATG	1 cut(s)	1358
BseMII	CTCAG	3 cut(s)	88, 1353, 1439
BseNI	ACTGG	4 cut(s)	717, 1135, 1297, 1644
BseRI	GAGGAG	3 cut(s)	19, 107, 110
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	2 cut(s)	1386, 1509
BseYI	CCCAGC	1 cut(s)	703
BshFI	GGCC	8 cut(s)	107, 129, 207, 305, 334, 555, 943, 1279
BshNI	GGYRCC	2 cut(s)	229, 263
BshVI	ATCGAT	1 cut(s)	1414
BsiHKAI	GWGCWC	2 cut(s)	617, 712
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	666, 1403
BslI	CCNNNNNNNGG	1 cut(s)	1710
BsmAI	GTCTC	4 cut(s)	845, 1419, 1438, 1735
BsmI	GAATGC	3 cut(s)	525, 770, 1376
BsnI	GGCC	8 cut(s)	107, 129, 207, 305, 334, 555, 943, 1279
Bso31I	GGTCTC	1 cut(s)	845
BsoBI	CYCGRG	1 cut(s)	217
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	3 cut(s)	42, 617, 712
Bsp13I	TCCGGA	1 cut(s)	1402
Bsp143I	GATC	8 cut(s)	346, 427, 568, 715, 1009, 1315, 1399, 1411
BspACI	CCGC	6 cut(s)	80, 302, 837, 1092, 1517, 1525
BspANI	GGCC	8 cut(s)	107, 129, 207, 305, 334, 555, 943, 1279
BspCNI	CTCAG	3 cut(s)	87, 1352, 1440
BspDI	ATCGAT	1 cut(s)	1414
BspEI	TCCGGA	1 cut(s)	1402
BspLI	GGNNCC	7 cut(s)	231, 265, 319, 799, 889, 1206, 1401
BspPI	GGATC	4 cut(s)	723, 1310, 1394, 1407
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	229, 263
BspTNI	GGTCTC	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	1358
BsrI	ACTGG	4 cut(s)	717, 1135, 1297, 1644
BssECI	CCNNGG	3 cut(s)	666, 1095, 1709
BssMI	GATC	8 cut(s)	346, 427, 568, 715, 1009, 1315, 1399, 1411
BssT1I	CCWWGG	1 cut(s)	1095
Bst2UI	CCWGG	1 cut(s)	1711
Bst4CI	ACNGT	4 cut(s)	167, 194, 452, 1124
BstAPI	GCANNNNNTGC	1 cut(s)	1360
BstBAI	YACGTR	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	85, 361, 810
BstDEI	CTNAG	4 cut(s)	74, 1241, 1339, 1448
BstENI	CCTNNNNNAGG	1 cut(s)	1708
BstF5I	GGATG	5 cut(s)	10, 160, 184, 1354, 1379
BstKTI	GATC	8 cut(s)	349, 430, 571, 718, 1012, 1318, 1402, 1414
BstMAI	GTCTC	4 cut(s)	845, 1419, 1438, 1735
BstMBI	GATC	8 cut(s)	346, 427, 568, 715, 1009, 1315, 1399, 1411
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 1351, 1360
BstNI	CCWGG	1 cut(s)	1711
BstSCI	CCNGG	2 cut(s)	665, 1709
BstSFI	CTRYAG	3 cut(s)	43, 190, 1563
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	2 cut(s)	1386, 1509
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	5 cut(s)	346, 427, 568, 715, 1399
BstYI	RGATCY	5 cut(s)	346, 427, 568, 715, 1399
Bsu15I	ATCGAT	1 cut(s)	1414
BsuRI	GGCC	8 cut(s)	107, 129, 207, 305, 334, 555, 943, 1279
BsuTUI	ATCGAT	1 cut(s)	1414
BtsCI	GGATG	5 cut(s)	10, 160, 184, 1354, 1379
BtsIMutI	CAGTG	3 cut(s)	82, 710, 1651
Cac8I	GCNNGC	3 cut(s)	85, 361, 810
Cfr13I	GGNCC	5 cut(s)	106, 128, 377, 1205, 1277
ClaI	ATCGAT	1 cut(s)	1414
Csp6I	GTAC	3 cut(s)	230, 264, 453
CviAII	CATG	3 cut(s)	209, 1222, 1231
CviQI	GTAC	3 cut(s)	230, 264, 453
DdeI	CTNAG	4 cut(s)	74, 1241, 1339, 1448
DpnI	GATC	8 cut(s)	348, 429, 570, 717, 1011, 1317, 1401, 1413
DpnII	GATC	8 cut(s)	346, 427, 568, 715, 1009, 1315, 1399, 1411
DraIII	CACNNNGTG	1 cut(s)	612
DrdI	GACNNNNNNGTC	1 cut(s)	977
DseDI	GACNNNNNNGTC	1 cut(s)	977
EaeI	YGGCCR	3 cut(s)	303, 332, 941
EciI	GGCGGA	1 cut(s)	1532
Eco130I	CCWWGG	1 cut(s)	1095
Eco147I	AGGCCT	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	845
Eco47I	GGWCC	2 cut(s)	377, 1205
Eco57I	CTGAAG	1 cut(s)	836
Eco88I	CYCGRG	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	1708
EcoO109I	RGGNCCY	2 cut(s)	106, 128
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	1709
EcoT14I	CCWWGG	1 cut(s)	1095
EcoT22I	ATGCAT	1 cut(s)	966
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	1095
FaeI	CATG	3 cut(s)	212, 1225, 1234
FatI	CATG	3 cut(s)	208, 1221, 1230
FauNDI	CATATG	2 cut(s)	173, 966
FblI	GTMKAC	2 cut(s)	1420, 1659
Fnu4HI	GCNGC	4 cut(s)	81, 303, 1375, 1523
FokI	GGATG	4 cut(s)	167, 191, 1341, 1366
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	4 cut(s)	81, 303, 1375, 1523
FspBI	CTAG	7 cut(s)	224, 425, 566, 794, 897, 1188, 1611
GluI	GCNGC	4 cut(s)	81, 303, 1375, 1523
GsaI	CCCAGC	1 cut(s)	707
HaeIII	GGCC	8 cut(s)	107, 129, 207, 305, 334, 555, 943, 1279
HapII	CCGG	2 cut(s)	666, 1403
Hin1II	CATG	3 cut(s)	212, 1225, 1234
HindIII	AAGCTT	1 cut(s)	1156
HinfI	GANTC	4 cut(s)	220, 490, 752, 1020
HpaII	CCGG	2 cut(s)	666, 1403
HphI	GGTGA	1 cut(s)	1081
Hpy166II	GTNNAC	3 cut(s)	710, 1421, 1660
Hpy188I	TCNGA	4 cut(s)	405, 1009, 1154, 1730
Hpy188III	TCNNGA	9 cut(s)	217, 425, 435, 494, 519, 723, 1178, 1403, 1441
Hpy8I	GTNNAC	3 cut(s)	710, 1421, 1660
HpyAV	CCTTC	9 cut(s)	97, 332, 545, 613, 1066, 1224, 1318, 1501, 1685
HpyCH4III	ACNGT	4 cut(s)	167, 194, 452, 1124
HpyCH4IV	ACGT	3 cut(s)	297, 1162, 1693
HpyCH4V	TGCA	8 cut(s)	87, 171, 487, 688, 710, 964, 1374, 1546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 1351, 1360
HpyF3I	CTNAG	4 cut(s)	74, 1241, 1339, 1448
HpySE526I	ACGT	3 cut(s)	297, 1162, 1693
Hsp92II	CATG	3 cut(s)	212, 1225, 1234
Kpn2I	TCCGGA	1 cut(s)	1402
KpnI	GGTACC	2 cut(s)	233, 267
Kzo9I	GATC	8 cut(s)	346, 427, 568, 715, 1009, 1315, 1399, 1411
LmnI	GCTCC	3 cut(s)	670, 797, 1519
Lsp1109I	GCAGC	2 cut(s)	1386, 1509
LweI	GCATC	3 cut(s)	19, 396, 1363
MaeI	CTAG	7 cut(s)	224, 425, 566, 794, 897, 1188, 1611
MaeII	ACGT	3 cut(s)	297, 1162, 1693
MaeIII	GTNAC	4 cut(s)	194, 340, 1113, 1257
MalI	GATC	8 cut(s)	348, 429, 570, 717, 1011, 1317, 1401, 1413
MboI	GATC	8 cut(s)	346, 427, 568, 715, 1009, 1315, 1399, 1411
MboII	GAAGA	4 cut(s)	173, 842, 1508, 1602
MflI	RGATCY	5 cut(s)	346, 427, 568, 715, 1399
MhlI	GDGCHC	3 cut(s)	42, 617, 712
MlsI	TGGCCA	2 cut(s)	334, 943
MluNI	TGGCCA	2 cut(s)	334, 943
MlyI	GAGTC	4 cut(s)	229, 484, 761, 1014
MmeI	TCCRAC	2 cut(s)	894, 1343
Mox20I	TGGCCA	2 cut(s)	334, 943
Mph1103I	ATGCAT	1 cut(s)	966
MroI	TCCGGA	1 cut(s)	1402
MroXI	GAANNNNTTC	1 cut(s)	141
MscI	TGGCCA	2 cut(s)	334, 943
MseI	TTAA	7 cut(s)	285, 471, 647, 974, 1551, 1581, 1595
MslI	CAYNNNNRTG	2 cut(s)	530, 959
Msp20I	TGGCCA	2 cut(s)	334, 943
MspI	CCGG	2 cut(s)	666, 1403
MspR9I	CCNGG	2 cut(s)	667, 1711
Mva1269I	GAATGC	3 cut(s)	525, 770, 1376
MvaI	CCWGG	1 cut(s)	1711
MwoI	GCNNNNNNNGC	3 cut(s)	299, 1351, 1360
NciI	CCSGG	1 cut(s)	667
NdeI	CATATG	2 cut(s)	173, 966
NdeII	GATC	8 cut(s)	346, 427, 568, 715, 1009, 1315, 1399, 1411
NlaIII	CATG	3 cut(s)	212, 1225, 1234
NlaIV	GGNNCC	7 cut(s)	231, 265, 319, 799, 889, 1206, 1401
NmuCI	GTSAC	2 cut(s)	1113, 1257
NsiI	ATGCAT	1 cut(s)	966
NspV	TTCGAA	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	1420
PctI	GAATGC	3 cut(s)	525, 770, 1376
PdmI	GAANNNNTTC	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	82, 304, 1376, 1524
PleI	GAGTC	4 cut(s)	228, 484, 760, 1014
PpsI	GAGTC	4 cut(s)	228, 484, 760, 1014
Ppu21I	YACGTR	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	1693
Psp6I	CCWGG	1 cut(s)	1709
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	1709
PspN4I	GGNNCC	7 cut(s)	231, 265, 319, 799, 889, 1206, 1401
PspPI	GGNCC	5 cut(s)	106, 128, 377, 1205, 1277
PsuI	RGATCY	5 cut(s)	346, 427, 568, 715, 1399
RsaI	GTAC	3 cut(s)	231, 265, 454
RsaNI	GTAC	3 cut(s)	230, 264, 453
RseI	CAYNNNNRTG	2 cut(s)	530, 959
SaqAI	TTAA	7 cut(s)	285, 471, 647, 974, 1551, 1581, 1595
SatI	GCNGC	4 cut(s)	81, 303, 1375, 1523
Sau3AI	GATC	8 cut(s)	346, 427, 568, 715, 1009, 1315, 1399, 1411
Sau96I	GGNCC	5 cut(s)	106, 128, 377, 1205, 1277
SchI	GAGTC	4 cut(s)	229, 484, 761, 1014
ScrFI	CCNGG	2 cut(s)	667, 1711
SduI	GDGCHC	3 cut(s)	42, 617, 712
SfaNI	GCATC	3 cut(s)	19, 396, 1363
SfcI	CTRYAG	3 cut(s)	43, 190, 1563
Sfr274I	CTCGAG	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	377, 1205
SlaI	CTCGAG	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	530, 959
SmlI	CTYRAG	3 cut(s)	217, 502, 1441
SmoI	CTYRAG	3 cut(s)	217, 502, 1441
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	6 cut(s)	80, 302, 837, 1092, 1517, 1525
SspMI	CTAG	7 cut(s)	224, 425, 566, 794, 897, 1188, 1611
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	665, 1709
StyI	CCWWGG	1 cut(s)	1095
TaaI	ACNGT	4 cut(s)	167, 194, 452, 1124
TaiI	ACGT	3 cut(s)	300, 1165, 1696
TaqI	TCGA	5 cut(s)	135, 218, 755, 1414, 1625
TauI	GCSGC	2 cut(s)	83, 305
Tru1I	TTAA	7 cut(s)	285, 471, 647, 974, 1551, 1581, 1595
Tru9I	TTAA	7 cut(s)	285, 471, 647, 974, 1551, 1581, 1595
TscAI	CASTG	3 cut(s)	82, 717, 1651
TseFI	GTSAC	2 cut(s)	1113, 1257
TseI	GCWGC	2 cut(s)	1374, 1522
Tsp45I	GTSAC	2 cut(s)	1113, 1257
TspDTI	ATGAA	1 cut(s)	1646
TspGWI	ACGGA	4 cut(s)	238, 259, 271, 1446
TspRI	CASTG	3 cut(s)	82, 717, 1651
VneI	GTGCAC	1 cut(s)	708
VpaK11BI	GGWCC	2 cut(s)	377, 1205
XagI	CCTNNNNNAGG	1 cut(s)	1708
XapI	RAATTY	5 cut(s)	116, 597, 731, 1108, 1652
XbaI	TCTAGA	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	633
XhoI	CTCGAG	1 cut(s)	217
XmiI	GTMKAC	2 cut(s)	1420, 1659
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	7 cut(s)	224, 425, 566, 794, 897, 1188, 1611
Zsp2I	ATGCAT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.