Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

47256545 .. 47257947

Gene Structure 1403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57974

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTTGCCACAAAGTAGCAGCTGCTCCCTTTCAACTTCTTTCTCTTGTTAGTTTCCTTCTTTTCTTAAATCCATGTTCTTCTATTTTCCTTGAAGCCACAACAATATTTGCCAACTCCAATACTGTCAATGATGAGAGGTCCAATGTGGCTTGCATTGAGGAAGAGAGGAAGGCCCTCCTTGAATTCAAGCAAGGTCTTCAAGATCCTTTGCCTGCGCTTCATTCTTGGGTTGGCAAAGACTGCTGCAACTGGCATGGCATAGTCTGCAACAACCAAACAGGTAACATCATCGAGCTTCGTCTTTTGGATACACAAATCTCTGGTACACTTTCAATGTCAATAGGCAGTCTTTCGGATTTGGAGACCTTGATTCTTTTCAACAATTCGTTCTCTGGCCCACTTCCGACATCGATCGAAAATCTTTCACATTTGAGGACCATGAACCTTTCTAGGAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAATCTTTCAAATTTGCAGAACTTGGACCTTTCTAGGAACTCAATGTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCAAATTTGCAGACCCTGGACCTTTCCAGGAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTATTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTCTTCAAACTCAATTTCCTGTCCACTTCCGACATCGATCGGAAATCTTTCGAATTTGCAGGCCCTGTACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATGGATTGGAAGTCTTTCAAATTTGCAGAACTTGGAGCTTGCCGACAACTCAAAAATGAATGGAACTATTCCAGAAAGCATCGGACAACTTAGAGAGTTAGAGTACTTGTATCTCTACGGTTGTTCATGGGAAGGCTTTATATCCGAAAATCATTTCAGAACACTAGCAGATTGGATACGTTTTATTTATCCAGCGAGGCATCCAACTCTTTGGTTTTCAACGTCAGTCATGACTGGATTCCTATCTTCAATCTTACGAATCTTTATATCACGGATTGTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

399

Amino Acids

43.2

Weight (kDa)

5.1

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	54 - 91	5.8e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	85 - 176	1.1e-08	Leucine-rich repeat region
LRR_8	PF13855	121 - 178	3.9e-07	Leucine rich repeat
LRR_14	PF23598	138 - 224	1.9e-14	Leucine-rich repeat region
LRR_14	PF23598	182 - 248	9.3e-11	Leucine-rich repeat region
LRR_8	PF13855	191 - 251	1.3e-09	Leucine rich repeat
LRR_14	PF23598	235 - 349	2.9e-18	Leucine-rich repeat region
LRR_8	PF13855	239 - 299	2.5e-10	Leucine rich repeat
LRR_8	PF13855	287 - 346	1.1e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	8 cut(s)	185, 502, 574, 646, 718, 790, 862, 934
AfaI	GTAC	3 cut(s)	328, 878, 1019
AjnI	CCWGG	5 cut(s)	585, 596, 657, 729, 801
AloI	GAACNNNNNNTCC	6 cut(s)	449, 481, 521, 553, 593, 625
AluBI	AGCT	3 cut(s)	23, 298, 952
AluI	AGCT	3 cut(s)	23, 298, 952
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	5 cut(s)	586, 658, 730, 802, 874
AoxI	GGCC	3 cut(s)	174, 397, 870
ApeKI	GCWGC	3 cut(s)	20, 23, 246
ApoI	RAATTY	8 cut(s)	185, 502, 574, 646, 718, 790, 862, 934
Asp700I	GAANNNNTTC	7 cut(s)	496, 568, 640, 712, 784, 856, 928
AspLEI	GCGC	1 cut(s)	220
AsuII	TTCGAA	4 cut(s)	644, 716, 788, 860
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	10, 32, 233
BciT130I	CCWGG	5 cut(s)	587, 598, 659, 731, 803
BciVI	GTATCC	2 cut(s)	304, 1083
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	3 cut(s)	453, 525, 1079
BfuI	GTATCC	2 cut(s)	304, 1083
BisI	GCNGC	3 cut(s)	21, 24, 247
BlsI	GCNGC	3 cut(s)	22, 25, 248
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	5 cut(s)	587, 598, 659, 731, 803
BmrFI	CCNGG	5 cut(s)	587, 598, 659, 731, 803
BmsI	GCATC	2 cut(s)	1002, 1123
BpiI	GAAGAC	1 cut(s)	191
Bpu14I	TTCGAA	4 cut(s)	644, 716, 788, 860
Bsa29I	ATCGAT	7 cut(s)	413, 485, 557, 629, 701, 773, 845
BsaBI	GATNNNNATC	1 cut(s)	1156
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	4 cut(s)	585, 657, 729, 801
BsaWI	WCCGGW	6 cut(s)	467, 539, 611, 683, 755, 899
Bse1I	ACTGG	2 cut(s)	257, 1153
Bse8I	GATNNNNATC	1 cut(s)	1156
BseBI	CCWGG	5 cut(s)	587, 598, 659, 731, 803
BseCI	ATCGAT	7 cut(s)	413, 485, 557, 629, 701, 773, 845
BseDI	CCNNGG	4 cut(s)	585, 657, 729, 801
BseGI	GGATG	1 cut(s)	1114
BseJI	GATNNNNATC	1 cut(s)	1156
BseNI	ACTGG	2 cut(s)	257, 1153
BseXI	GCAGC	3 cut(s)	10, 32, 233
Bsh1285I	CGRYCG	7 cut(s)	417, 489, 561, 633, 705, 777, 849
BshFI	GGCC	3 cut(s)	176, 399, 872
BshVI	ATCGAT	7 cut(s)	413, 485, 557, 629, 701, 773, 845
BsiEI	CGRYCG	7 cut(s)	417, 489, 561, 633, 705, 777, 849
BsiSI	CCGG	6 cut(s)	468, 540, 612, 684, 756, 900
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	3 cut(s)	176, 399, 872
Bso31I	GGTCTC	1 cut(s)	359
Bsp119I	TTCGAA	4 cut(s)	644, 716, 788, 860
Bsp143I	GATC	8 cut(s)	205, 414, 486, 558, 630, 702, 774, 846
BspANI	GGCC	3 cut(s)	176, 399, 872
BspDI	ATCGAT	7 cut(s)	413, 485, 557, 629, 701, 773, 845
BspHI	TCATGA	1 cut(s)	1143
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	4 cut(s)	644, 716, 788, 860
BspTNI	GGTCTC	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	257, 1153
BssECI	CCNNGG	4 cut(s)	585, 657, 729, 801
BssMI	GATC	8 cut(s)	205, 414, 486, 558, 630, 702, 774, 846
Bst2UI	CCWGG	5 cut(s)	587, 598, 659, 731, 803
Bst4CI	ACNGT	2 cut(s)	127, 1034
Bst6I	CTCTTC	1 cut(s)	159
BstAPI	GCANNNNNTGC	2 cut(s)	243, 267
BstBI	TTCGAA	4 cut(s)	644, 716, 788, 860
BstC8I	GCNNGC	5 cut(s)	7, 154, 216, 870, 954
BstDEI	CTNAG	1 cut(s)	1004
BstF5I	GGATG	1 cut(s)	1114
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	8 cut(s)	208, 417, 489, 561, 633, 705, 777, 849
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	8 cut(s)	205, 414, 486, 558, 630, 702, 774, 846
BstMCI	CGRYCG	7 cut(s)	417, 489, 561, 633, 705, 777, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 267
BstNI	CCWGG	5 cut(s)	587, 598, 659, 731, 803
BstSCI	CCNGG	5 cut(s)	585, 596, 657, 729, 801
BstV1I	GCAGC	3 cut(s)	10, 32, 233
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	1125
BstYI	RGATCY	1 cut(s)	205
Bsu15I	ATCGAT	7 cut(s)	413, 485, 557, 629, 701, 773, 845
BsuI	GTATCC	2 cut(s)	304, 1083
BsuRI	GGCC	3 cut(s)	176, 399, 872
BsuTUI	ATCGAT	7 cut(s)	413, 485, 557, 629, 701, 773, 845
BtsCI	GGATG	1 cut(s)	1114
Cac8I	GCNNGC	5 cut(s)	7, 154, 216, 870, 954
CaiI	CAGNNNCTG	5 cut(s)	586, 658, 730, 802, 874
CciI	TCATGA	1 cut(s)	1143
CfoI	GCGC	1 cut(s)	220
ClaI	ATCGAT	7 cut(s)	413, 485, 557, 629, 701, 773, 845
Csp6I	GTAC	3 cut(s)	327, 877, 1018
CviAII	CATG	6 cut(s)	75, 257, 442, 915, 1041, 1144
CviQI	GTAC	3 cut(s)	327, 877, 1018
DdeI	CTNAG	1 cut(s)	1004
DpnI	GATC	8 cut(s)	207, 416, 488, 560, 632, 704, 776, 848
DpnII	GATC	8 cut(s)	205, 414, 486, 558, 630, 702, 774, 846
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	359
EcoO109I	RGGNCCY	2 cut(s)	175, 871
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	5 cut(s)	585, 596, 657, 729, 801
FaeI	CATG	6 cut(s)	78, 260, 445, 918, 1044, 1147
FaiI	YATR	9 cut(s)	76, 258, 263, 443, 916, 1042, 1055, 1145, 1181
FatI	CATG	6 cut(s)	74, 256, 441, 914, 1040, 1143
Fnu4HI	GCNGC	3 cut(s)	21, 24, 247
FokI	GGATG	1 cut(s)	1101
Fsp4HI	GCNGC	3 cut(s)	21, 24, 247
FspBI	CTAG	3 cut(s)	453, 525, 1079
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	21, 24, 247
HaeIII	GGCC	3 cut(s)	176, 399, 872
HapII	CCGG	6 cut(s)	468, 540, 612, 684, 756, 900
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	6 cut(s)	78, 260, 445, 918, 1044, 1147
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	3 cut(s)	373, 1152, 1173
HpaII	CCGG	6 cut(s)	468, 540, 612, 684, 756, 900
Hpy166II	GTNNAC	9 cut(s)	329, 473, 545, 617, 689, 761, 833, 905, 1195
Hpy188III	TCNNGA	3 cut(s)	203, 986, 1144
Hpy8I	GTNNAC	9 cut(s)	329, 473, 545, 617, 689, 761, 833, 905, 1195
HpyAV	CCTTC	3 cut(s)	68, 166, 1040
HpyCH4III	ACNGT	2 cut(s)	127, 1034
HpyCH4IV	ACGT	2 cut(s)	1093, 1136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 267
HpyF3I	CTNAG	1 cut(s)	1004
HpySE526I	ACGT	2 cut(s)	1093, 1136
Hsp92II	CATG	6 cut(s)	78, 260, 445, 918, 1044, 1147
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	8 cut(s)	205, 414, 486, 558, 630, 702, 774, 846
LmnI	GCTCC	2 cut(s)	31, 949
Lsp1109I	GCAGC	3 cut(s)	10, 32, 233
LweI	GCATC	2 cut(s)	1002, 1123
MaeI	CTAG	3 cut(s)	453, 525, 1079
MaeII	ACGT	2 cut(s)	1093, 1136
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	8 cut(s)	207, 416, 488, 560, 632, 704, 776, 848
MboI	GATC	8 cut(s)	205, 414, 486, 558, 630, 702, 774, 846
MboII	GAAGA	7 cut(s)	72, 176, 191, 732, 804, 876, 1152
MflI	RGATCY	1 cut(s)	205
MmeI	TCCRAC	9 cut(s)	431, 503, 575, 647, 719, 791, 863, 935, 1142
MnlI	CCTC	6 cut(s)	132, 154, 162, 188, 429, 1104
MroXI	GAANNNNTTC	7 cut(s)	496, 568, 640, 712, 784, 856, 928
MseI	TTAA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	6 cut(s)	468, 540, 612, 684, 756, 900
MspR9I	CCNGG	5 cut(s)	587, 598, 659, 731, 803
MvaI	CCWGG	5 cut(s)	587, 598, 659, 731, 803
MwoI	GCNNNNNNNGC	2 cut(s)	243, 267
NdeII	GATC	8 cut(s)	205, 414, 486, 558, 630, 702, 774, 846
NlaIII	CATG	6 cut(s)	78, 260, 445, 918, 1044, 1147
NspV	TTCGAA	4 cut(s)	644, 716, 788, 860
PagI	TCATGA	1 cut(s)	1143
PdmI	GAANNNNTTC	7 cut(s)	496, 568, 640, 712, 784, 856, 928
PfeI	GAWTC	3 cut(s)	373, 1152, 1173
PfoI	TCCNGGA	1 cut(s)	596
PkrI	GCNGC	3 cut(s)	22, 25, 248
Ple19I	CGATCG	7 cut(s)	417, 489, 561, 633, 705, 777, 849
Psp6I	CCWGG	5 cut(s)	585, 596, 657, 729, 801
PspGI	CCWGG	5 cut(s)	585, 596, 657, 729, 801
PstNI	CAGNNNCTG	5 cut(s)	586, 658, 730, 802, 874
PsuI	RGATCY	1 cut(s)	205
PvuI	CGATCG	7 cut(s)	417, 489, 561, 633, 705, 777, 849
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	328, 878, 1019
RsaNI	GTAC	3 cut(s)	327, 877, 1018
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	3 cut(s)	21, 24, 247
Sau3AI	GATC	8 cut(s)	205, 414, 486, 558, 630, 702, 774, 846
ScaI	AGTACT	1 cut(s)	1019
ScrFI	CCNGG	5 cut(s)	587, 598, 659, 731, 803
SfaNI	GCATC	2 cut(s)	1002, 1123
SfuI	TTCGAA	4 cut(s)	644, 716, 788, 860
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	3 cut(s)	453, 525, 1079
StyD4I	CCNGG	5 cut(s)	585, 596, 657, 729, 801
TaaI	ACNGT	2 cut(s)	127, 1034
TaiI	ACGT	2 cut(s)	1096, 1139
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	3 cut(s)	373, 1152, 1173
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseI	GCWGC	3 cut(s)	20, 23, 246
TspDTI	ATGAA	4 cut(s)	212, 458, 986, 1029
XapI	RAATTY	8 cut(s)	185, 502, 574, 646, 718, 790, 862, 934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	912
XmnI	GAANNNNTTC	7 cut(s)	496, 568, 640, 712, 784, 856, 928
XspI	CTAG	3 cut(s)	453, 525, 1079
ZrmI	AGTACT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.