Rh1DG252400

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000285
Physical Location & Seq
Reverse (-)
46633416 .. 46635291
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG252400.1

Sequence Viewer

Length: 252 bp
ATGTCAAAGTTGGTGTTTCTTGATCTCTCAAGGAATTATTTCTCTGGAAATATTCCTAGGGATTGGACGGGTTTGCTAGATTTGAAGATCATAGACTTTTCAAATAACAAGCTATCTGGTGAAATCCCAAGCTCCATGTGCTCCCAACTACCATCACTCAAATGGTTGAGATTAAGCAACAACAATCTTTCTGGGAATCTTGAGTCGCAACAACAACAACTTAGTGGTTGCATAGTGTATTTGGAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

83

Amino Acids

9.38

Weight (kDa)

6.08

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 63 6.9e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 85, 102
AluBI AGCT 2 cut(s) 112, 132
AluI AGCT 2 cut(s) 112, 132
Alw21I GWGCWC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 38
AspA2I CCTAGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 131
AvrII CCTAGG 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 1 cut(s) 160
BfaI CTAG 2 cut(s) 57, 77
BlnI CCTAGG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 13, 221
BsaJI CCNNGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 22, 87
BspLI GGNNCC 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 22, 87
BssT1I CCWWGG 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 221
BstKTI GATC 2 cut(s) 25, 90
BstMBI GATC 2 cut(s) 22, 87
BstMWI GCNNNNNNNGC 1 cut(s) 138
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 112, 132, 247
CviKI_1 RGCY 3 cut(s) 112, 132, 247
DdeI CTNAG 1 cut(s) 221
DpnI GATC 2 cut(s) 24, 89
DpnII GATC 2 cut(s) 22, 87
Eco130I CCWWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 92, 137, 233
FatI CATG 1 cut(s) 135
FspBI CTAG 2 cut(s) 57, 77
Hin1II CATG 1 cut(s) 139
HinfI GANTC 2 cut(s) 196, 203
HphI GGTGA 1 cut(s) 131
Hpy188III TCNNGA 3 cut(s) 20, 45, 200
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 2 cut(s) 22, 87
LmnI GCTCC 3 cut(s) 137, 146, 244
LpnPI CCDG 3 cut(s) 30, 102, 177
MaeI CTAG 2 cut(s) 57, 77
MalI GATC 2 cut(s) 24, 89
MboI GATC 2 cut(s) 22, 87
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 2 cut(s) 22, 87
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 196
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 2 cut(s) 22, 87
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 143
SetI ASST 2 cut(s) 114, 134
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 28, 200
SmoI CTYRAG 2 cut(s) 28, 200
Sse9I AATT 1 cut(s) 34
SspI AATATT 1 cut(s) 52
SspMI CTAG 2 cut(s) 57, 77
StyI CCWWGG 1 cut(s) 56
TasI AATT 1 cut(s) 34
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XmaJI CCTAGG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 2 cut(s) 57, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.