Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

55003856 .. 55007055

Gene Structure 3200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG399300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATGAATGGCACAATTCCAGAAAGTATTGGACAACTAACACGGTTAAAATCATTAGATCTCAGGGGTAGTTCATGGGAAGGCATCATATCTGAAATTCATCTTCACAATCTCTCTGCATTAAGTGATTTTTCATCTTCTAAAAATAACTCTTTGGTTTTTGACATCAGTCATGAGTGGATTCCTCCCTTCAATCTATTTGCTCTATCTATCAGTGACTGCAAAATGATGAATCCTGCATGTTCAGCATGGCTCAGAAATCAGGGTGTCCTCCAAGAAATAACTCTCTCCAATGTGGGAATTTCATATACAATACCGGTTTGGTTTTGGGGAATTCCATCACATCCTTCTTGGTGGTTGAATGTGGATCTCTCCAATAACCAACTAAGAGGACAGCTTGCTCACTCGATAAATTTTGTTGAAGGGGCATCCGTCAATTTGAACAACAACTCCAACAACTCCTTGGACGGTTCTCTTCTTGTTTGGCCAAATGTAATGTACTTTGCTTTGGCTAGCAACAGATTTTCTGGACCAATTCCCTTAAACATTGGCCAGCAGATGTCAAATCTGTATCTCCTAGATCTTTCAATGGTAGAATTCCTGCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

203

Amino Acids

22.64

Weight (kDa)

5.16

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	2 cut(s)	485, 550
AcsI	RAATTY	5 cut(s)	96, 300, 333, 412, 596
AfaI	GTAC	1 cut(s)	500
AgeI	ACCGGT	1 cut(s)	316
AgsI	TTSAA	5 cut(s)	193, 361, 422, 442, 588
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
AlwI	GGATC	1 cut(s)	375
AlwNI	CAGNNNCTG	1 cut(s)	219
AoxI	GGCC	2 cut(s)	485, 550
ApoI	RAATTY	5 cut(s)	96, 300, 333, 412, 596
AsiGI	ACCGGT	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	530
BalI	TGGCCA	2 cut(s)	487, 552
BccI	CCATC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	513, 578
BglII	AGATCT	2 cut(s)	58, 580
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmsI	GCATC	2 cut(s)	93, 437
BmtI	GCTAGC	1 cut(s)	516
BoxI	GACNNNNGTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bse118I	RCCGGY	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	343, 428
BseMII	CTCAG	2 cut(s)	76, 268
BshFI	GGCC	2 cut(s)	487, 552
BshTI	ACCGGT	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	317
BsnI	GGCC	2 cut(s)	487, 552
Bsp143I	GATC	3 cut(s)	58, 367, 580
BspANI	GGCC	2 cut(s)	487, 552
BspCNI	CTCAG	2 cut(s)	75, 267
BspHI	TCATGA	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	3 cut(s)	58, 367, 580
BssT1I	CCWWGG	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	45, 470
Bst6I	CTCTTC	1 cut(s)	480
BstC8I	GCNNGC	3 cut(s)	399, 514, 554
BstDEI	CTNAG	3 cut(s)	62, 254, 386
BstF5I	GGATG	2 cut(s)	343, 428
BstKTI	GATC	3 cut(s)	61, 370, 583
BstMBI	GATC	3 cut(s)	58, 367, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	168
BstX2I	RGATCY	3 cut(s)	58, 367, 580
BstYI	RGATCY	3 cut(s)	58, 367, 580
BsuRI	GGCC	2 cut(s)	487, 552
BtsCI	GGATG	2 cut(s)	343, 428
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	399, 514, 554
CaiI	CAGNNNCTG	1 cut(s)	219
CciI	TCATGA	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	499
CspAI	ACCGGT	1 cut(s)	316
CviAII	CATG	4 cut(s)	75, 173, 240, 249
CviJI	RGCY	5 cut(s)	253, 397, 487, 512, 552
CviKI_1	RGCY	5 cut(s)	253, 397, 487, 512, 552
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	3 cut(s)	62, 254, 386
DpnI	GATC	3 cut(s)	60, 369, 582
DpnII	GATC	3 cut(s)	58, 367, 580
EaeI	YGGCCR	2 cut(s)	485, 550
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	530
EcoRI	GAATTC	2 cut(s)	333, 596
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	78, 176, 243, 252
FaiI	YATR	8 cut(s)	76, 89, 174, 241, 250, 307, 309, 610
FatI	CATG	4 cut(s)	74, 172, 239, 248
FokI	GGATG	2 cut(s)	330, 415
FspBI	CTAG	2 cut(s)	513, 578
HaeIII	GGCC	2 cut(s)	487, 552
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	4 cut(s)	78, 176, 243, 252
HinfI	GANTC	2 cut(s)	181, 232
HpaII	CCGG	1 cut(s)	317
Hpy188I	TCNGA	2 cut(s)	94, 257
Hpy188III	TCNNGA	3 cut(s)	20, 173, 528
HpyAV	CCTTC	4 cut(s)	74, 199, 357, 416
HpyCH4III	ACNGT	2 cut(s)	45, 470
HpyCH4V	TGCA	3 cut(s)	119, 222, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	3 cut(s)	62, 254, 386
Hsp92II	CATG	4 cut(s)	78, 176, 243, 252
Kzo9I	GATC	3 cut(s)	58, 367, 580
LpnPI	CCDG	7 cut(s)	33, 49, 248, 249, 330, 513, 566
LweI	GCATC	2 cut(s)	93, 437
MaeI	CTAG	2 cut(s)	513, 578
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	3 cut(s)	60, 369, 582
MboI	GATC	3 cut(s)	58, 367, 580
MboII	GAAGA	3 cut(s)	95, 129, 467
MflI	RGATCY	3 cut(s)	58, 367, 580
MlsI	TGGCCA	2 cut(s)	487, 552
MluCI	AATT	8 cut(s)	15, 96, 300, 333, 412, 436, 534, 596
MluNI	TGGCCA	2 cut(s)	487, 552
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	3 cut(s)	195, 281, 383
Mox20I	TGGCCA	2 cut(s)	487, 552
MscI	TGGCCA	2 cut(s)	487, 552
MseI	TTAA	3 cut(s)	47, 122, 542
Msp20I	TGGCCA	2 cut(s)	487, 552
MspI	CCGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	3 cut(s)	58, 367, 580
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	4 cut(s)	78, 176, 243, 252
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	243
PagI	TCATGA	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	181, 232
PinAI	ACCGGT	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	219
PsuI	RGATCY	3 cut(s)	58, 367, 580
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SaqAI	TTAA	3 cut(s)	47, 122, 542
Sau3AI	GATC	3 cut(s)	58, 367, 580
Sau96I	GGNCC	1 cut(s)	530
SetI	ASST	1 cut(s)	399
SfaNI	GCATC	2 cut(s)	93, 437
SinI	GGWCC	1 cut(s)	530
Sse9I	AATT	8 cut(s)	15, 96, 300, 333, 412, 436, 534, 596
SspMI	CTAG	2 cut(s)	513, 578
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	45, 470
TaqI	TCGA	1 cut(s)	407
TasI	AATT	8 cut(s)	15, 96, 300, 333, 412, 436, 534, 596
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	181, 232
Tru1I	TTAA	3 cut(s)	47, 122, 542
Tru9I	TTAA	3 cut(s)	47, 122, 542
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	6 cut(s)	20, 63, 89, 123, 245, 294
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	5 cut(s)	96, 300, 333, 412, 596
XceI	RCATGY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XspI	CTAG	2 cut(s)	513, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.