Rroxscaffold_3G00236900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000285
Physical Location & Seq
Forward (+)
24359667 .. 24366743
7077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236900.1

Sequence Viewer

Length: 324 bp
ATGAAAGAATGCATACTTATGTCGGTATCCCTACTATATCCTTTAAAGCACCTTCTCCAAGTTGCAGACCTATATACTGCGTGGCCATACCAAAAGCTATACCAGACCCCGGCCAATAACTATACCACTTTTAATGTAATGGACAAATTGAGAGGCATAACTAAGGGTCGAGGTAGACCACGAGGTAAGGTCGAGTCCAATGTAGGGACAGGATCTTTCTATGTAGACAGGTTGAGGATGAGATGGAGGCATCGAGGTGGAGCCGCCTGTTCCACCTTGGAAAGAGAATTGATCTCATTAACTCAAGATGATGAGAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.31

Weight (kDa)

9.59

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 175, 225
AciI CCGC 1 cut(s) 264
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 2 cut(s) 83, 111
AfiI CCNNNNNNNGG 2 cut(s) 109, 204
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
AlwI GGATC 1 cut(s) 220
AoxI GGCC 2 cut(s) 83, 111
AsuC2I CCSGG 1 cut(s) 110
BalI TGGCCA 1 cut(s) 85
BauI CACGAG 1 cut(s) 180
BccI CCATC 1 cut(s) 237
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 108, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 204
BseDI CCNNGG 2 cut(s) 108, 276
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 109, 204
BshFI GGCC 2 cut(s) 85, 113
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 109, 204
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 2 cut(s) 85, 113
Bsp143I GATC 2 cut(s) 212, 291
BspACI CCGC 1 cut(s) 264
BspANI GGCC 2 cut(s) 85, 113
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 108, 276
BssMI GATC 2 cut(s) 212, 291
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 2 cut(s) 215, 294
BstMBI GATC 2 cut(s) 212, 291
BstSCI CCNGG 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 85, 113
BtsCI GGATG 1 cut(s) 243
CviJI RGCY 4 cut(s) 85, 97, 113, 263
CviKI_1 RGCY 4 cut(s) 85, 97, 113, 263
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 214, 293
DpnII GATC 2 cut(s) 212, 291
DraI TTTAAA 1 cut(s) 45
EaeI YGGCCR 2 cut(s) 83, 111
Eco130I CCWWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 276
FaqI GGGAC 1 cut(s) 220
FblI GTMKAC 2 cut(s) 175, 225
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 2 cut(s) 85, 113
HapII CCGG 1 cut(s) 110
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 176, 226
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 2 cut(s) 176, 226
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 12, 65
HpyF3I CTNAG 1 cut(s) 162
Kzo9I GATC 2 cut(s) 212, 291
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 5 cut(s) 116, 123, 195, 214, 280
LweI GCATC 1 cut(s) 259
MalI GATC 2 cut(s) 214, 293
MboI GATC 2 cut(s) 212, 291
MflI RGATCY 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 2 cut(s) 146, 287
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 6 cut(s) 146, 164, 176, 228, 240, 248
Mox20I TGGCCA 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 14
MscI TGGCCA 1 cut(s) 85
MseI TTAA 3 cut(s) 44, 132, 299
MslI CAYNNNNRTG 2 cut(s) 17, 255
Msp20I TGGCCA 1 cut(s) 85
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 110
NdeII GATC 2 cut(s) 212, 291
NlaIV GGNNCC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 14
PctI GAATGC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 212
RseI CAYNNNNRTG 2 cut(s) 17, 255
SaqAI TTAA 3 cut(s) 44, 132, 299
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 212, 291
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 110
SetI ASST 9 cut(s) 54, 72, 99, 175, 187, 192, 233, 259, 278
SfaNI GCATC 1 cut(s) 259
SmiMI CAYNNNNRTG 2 cut(s) 17, 255
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 2 cut(s) 146, 287
SsiI CCGC 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 276
TaqI TCGA 3 cut(s) 169, 192, 253
TasI AATT 2 cut(s) 146, 287
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 3 cut(s) 44, 132, 299
Tru9I TTAA 3 cut(s) 44, 132, 299
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 2 cut(s) 175, 225
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.