Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

63255523 .. 63258262

Gene Structure 2740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTCCCTTCACTGTTAGAGTTGCCTGCCTGTGAAATTCATCACCTTCCTCAATCACTTCCATATGTAAATTTTACATCACTTTTGGTCTTAGACCTCTCAGCCAACAACTTCAACTCTTCATTGCCTCAATTGCTTTTCAATGTCCGTACCCTTGTGAAAATTTTCTGGACCAATTCCCTTAAACATTGGCCAGCAGATGTCAAATCTGTATCTCCTAGATCTTTAAATGGTAGAATTCCTGCTTCCATAAGTAATATGGAGAATTTGACTTCTCTTGATCTCTCGAAAAATTATTTATCCGGAGATATCCCTACTGATTGGAAGGGTTTACAAAGCCTAACAACCATAGATTTTTCTGATAACAACCTTTCCGGTCAAATTCCATCCTCCATGTGCTCACAACTACCTTCACTGCATTGGTTGAGATTAAGCAATAACAATCTTTCCGGGGAGCTTGAAAAGCCCTTGCAACACTGTACATACCTGGATGCACTTGATCTTGGAGGAAATAAATTTTCAGGGGCCATATCAACATGGATCGGAGAACGTTCATTCTCATATTTACTTCTCGGAGCCAACATGTTCACTGGAAATATTCCTCAGCAAATATGCAGCCTCTCCTATGTTCAGGTTTTAAACCTTTCTCAAAACATATTATCAGGCTCCGATCCATCCCTAGATGCCTTGGTAATTTGGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

235

Amino Acids

25.98

Weight (kDa)

5.65

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_ComC	PF24141	23 - 134	7.6e-06	EGF-like domain-containing protein ComC LRR domain
LRR_8	PF13855	83 - 124	4e-06	Leucine rich repeat
LRR_4	PF12799	89 - 129	3.8e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	302
AclI	AACGTT	1 cut(s)	550
AclWI	GGATC	2 cut(s)	548, 665
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	7 cut(s)	36, 70, 162, 237, 265, 381, 515
AfaI	GTAC	2 cut(s)	151, 481
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	115, 142, 461
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	1 cut(s)	457
AluI	AGCT	1 cut(s)	457
Alw21I	GWGCWC	1 cut(s)	401
AlwI	GGATC	2 cut(s)	548, 665
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	2 cut(s)	191, 525
ApeKI	GCWGC	1 cut(s)	615
ApoI	RAATTY	7 cut(s)	36, 70, 162, 237, 265, 381, 515
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	171, 525
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	627
BccI	CCATC	2 cut(s)	394, 682
BciT130I	CCWGG	1 cut(s)	488
BcnI	CCSGG	1 cut(s)	451
BfaI	CTAG	2 cut(s)	219, 680
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	1 cut(s)	616
BlsI	GCNGC	1 cut(s)	617
Bme1390I	CCNGG	2 cut(s)	451, 488
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	171, 525
BmiI	GGNNCC	3 cut(s)	526, 577, 667
BmrFI	CCNGG	2 cut(s)	451, 488
BmsI	GCATC	2 cut(s)	481, 673
Bpu10I	CCTNAGC	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	451
BsaJI	CCNNGG	2 cut(s)	450, 687
BsaWI	WCCGGW	2 cut(s)	302, 374
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	450, 687
BseGI	GGATG	3 cut(s)	386, 496, 674
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	114, 617
BseNI	ACTGG	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	627
BshFI	GGCC	2 cut(s)	193, 527
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	3 cut(s)	303, 375, 450
BsnI	GGCC	2 cut(s)	193, 527
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp13I	TCCGGA	1 cut(s)	302
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	5 cut(s)	221, 280, 499, 540, 670
BspANI	GGCC	2 cut(s)	193, 527
BspCNI	CTCAG	2 cut(s)	113, 616
BspEI	TCCGGA	1 cut(s)	302
BspLI	GGNNCC	3 cut(s)	526, 577, 667
BspPI	GGATC	2 cut(s)	548, 665
BsrDI	GCAATG	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	450, 687
BssMI	GATC	5 cut(s)	221, 280, 499, 540, 670
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	15, 479
Bst6I	CTCTTC	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	27, 195
BstDEI	CTNAG	3 cut(s)	91, 100, 603
BstF5I	GGATG	3 cut(s)	386, 496, 674
BstKTI	GATC	5 cut(s)	224, 283, 502, 543, 673
BstMBI	GATC	5 cut(s)	221, 280, 499, 540, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 463
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	449, 486
BstV1I	GCAGC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	193, 527
BtsCI	GGATG	3 cut(s)	386, 496, 674
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	4 cut(s)	11, 413, 475, 588
Cac8I	GCNNGC	2 cut(s)	27, 195
Cfr13I	GGNCC	2 cut(s)	171, 525
Csp6I	GTAC	2 cut(s)	150, 480
CviAII	CATG	3 cut(s)	394, 537, 583
CviJI	RGCY	9 cut(s)	104, 193, 339, 457, 466, 527, 578, 618, 666
CviKI_1	RGCY	9 cut(s)	104, 193, 339, 457, 466, 527, 578, 618, 666
CviQI	GTAC	2 cut(s)	150, 480
DdeI	CTNAG	3 cut(s)	91, 100, 603
DpnI	GATC	5 cut(s)	223, 282, 501, 542, 672
DpnII	GATC	5 cut(s)	221, 280, 499, 540, 670
DraI	TTTAAA	2 cut(s)	228, 639
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	687
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	486
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	3 cut(s)	397, 540, 586
FatI	CATG	3 cut(s)	393, 536, 582
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	616
FokI	GGATG	3 cut(s)	373, 503, 661
Fsp4HI	GCNGC	1 cut(s)	616
FspBI	CTAG	2 cut(s)	219, 680
GluI	GCNGC	1 cut(s)	616
HaeIII	GGCC	2 cut(s)	193, 527
HapII	CCGG	3 cut(s)	303, 375, 450
Hin1II	CATG	3 cut(s)	397, 540, 586
HpaII	CCGG	3 cut(s)	303, 375, 450
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	332, 588
Hpy188I	TCNGA	4 cut(s)	361, 545, 575, 670
Hpy188III	TCNNGA	4 cut(s)	169, 278, 286, 303
Hpy8I	GTNNAC	2 cut(s)	332, 588
HpyAV	CCTTC	4 cut(s)	18, 56, 319, 420
HpyCH4III	ACNGT	2 cut(s)	15, 479
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	4 cut(s)	418, 472, 494, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 463
HpyF3I	CTNAG	3 cut(s)	91, 100, 603
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	3 cut(s)	397, 540, 586
Kpn2I	TCCGGA	1 cut(s)	302
Kzo9I	GATC	5 cut(s)	221, 280, 499, 540, 670
LmnI	GCTCC	4 cut(s)	9, 454, 575, 671
Lsp1109I	GCAGC	1 cut(s)	627
LweI	GCATC	2 cut(s)	481, 673
MaeI	CTAG	2 cut(s)	219, 680
MaeII	ACGT	1 cut(s)	550
MalI	GATC	5 cut(s)	223, 282, 501, 542, 672
MboI	GATC	5 cut(s)	221, 280, 499, 540, 670
MboII	GAAGA	1 cut(s)	111
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	193
MluNI	TGGCCA	1 cut(s)	193
MnlI	CCTC	7 cut(s)	60, 107, 138, 400, 500, 612, 629
Mox20I	TGGCCA	1 cut(s)	193
MroI	TCCGGA	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	4 cut(s)	183, 227, 431, 638
Msp20I	TGGCCA	1 cut(s)	193
MspI	CCGG	3 cut(s)	303, 375, 450
MspR9I	CCNGG	2 cut(s)	451, 488
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	133, 463
NciI	CCSGG	1 cut(s)	451
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	5 cut(s)	221, 280, 499, 540, 670
NlaIII	CATG	3 cut(s)	397, 540, 586
NlaIV	GGNNCC	3 cut(s)	526, 577, 667
NspI	RCATGY	1 cut(s)	586
PciI	ACATGT	1 cut(s)	582
PdmI	GAANNNNTTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	617
PscI	ACATGT	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	3 cut(s)	526, 577, 667
PspPI	GGNCC	2 cut(s)	171, 525
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	2 cut(s)	151, 481
RsaNI	GTAC	2 cut(s)	150, 480
SaqAI	TTAA	4 cut(s)	183, 227, 431, 638
SatI	GCNGC	1 cut(s)	616
Sau3AI	GATC	5 cut(s)	221, 280, 499, 540, 670
Sau96I	GGNCC	2 cut(s)	171, 525
ScrFI	CCNGG	2 cut(s)	451, 488
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	9 cut(s)	48, 99, 372, 412, 459, 489, 553, 636, 645
SfaNI	GCATC	2 cut(s)	481, 673
SinI	GGWCC	1 cut(s)	171
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	2 cut(s)	219, 680
StyD4I	CCNGG	2 cut(s)	449, 486
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	2 cut(s)	15, 479
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	1 cut(s)	287
TatI	WGTACW	1 cut(s)	479
Tru1I	TTAA	4 cut(s)	183, 227, 431, 638
Tru9I	TTAA	4 cut(s)	183, 227, 431, 638
TscAI	CASTG	4 cut(s)	18, 420, 482, 595
TseI	GCWGC	1 cut(s)	615
TspDTI	ATGAA	3 cut(s)	29, 111, 543
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	4 cut(s)	18, 420, 482, 595
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	7 cut(s)	36, 70, 162, 237, 265, 381, 515
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	219, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.