Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012562.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

8326 .. 8832

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012562.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgaaaaatctcatggctttgggtagcttgaacttatcccataaccatttgacaggaaagataccagagggtatcggaagcttacatgagttagaagcacttgacctctctaataaccatctttggggtttaattccttcaagcatgacctctatgacttcactaagcaaattgaatttgtcattcaacaacttctctgggccaatcccatcagccaaccaattcctcaccttcaatgacccaacctcatttgaaggaaactcaggactttgcggacctccattgccaacccaatgcatttcagttaatgatccagccgtgaaggttgacgaagatgaagaagataagtatggaaaattatggttctatgcaagcacatcattggggttcattgtaggattttgggttgcttttggaagtttggtgataaagaggtcatggagacatgcttacttccagtttcttgacaatatgaaagacaagctttgcttctgtttttggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

168

Amino Acids

18.74

Weight (kDa)

5.9

Isoelectric Point (pI)

22.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	6 cut(s)	31, 141, 175, 187, 235, 254
AluBI	AGCT	3 cut(s)	27, 81, 484
AluI	AGCT	3 cut(s)	27, 81, 484
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	200, 275
AsuHPI	GGTGA	2 cut(s)	220, 436
AvaII	GGWCC	1 cut(s)	275
BccI	CCATC	2 cut(s)	126, 217
BceAI	ACGGC	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	200, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	457
BshFI	GGCC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	275
BspPI	GGATC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	457
BssMI	GATC	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	164, 262
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	200, 275
CviAII	CATG	5 cut(s)	13, 86, 145, 438, 446
CviJI	RGCY	7 cut(s)	17, 27, 81, 202, 215, 317, 484
CviKI_1	RGCY	7 cut(s)	17, 27, 81, 202, 215, 317, 484
DdeI	CTNAG	2 cut(s)	164, 262
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	275
EcoT22I	ATGCAT	1 cut(s)	299
FaeI	CATG	5 cut(s)	16, 89, 148, 441, 449
FalI	AAGNNNNNCTT	4 cut(s)	468, 500, 473, 505
FatI	CATG	5 cut(s)	12, 85, 144, 437, 445
HaeIII	GGCC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	16, 89, 148, 441, 449
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	2 cut(s)	79, 482
HphI	GGTGA	2 cut(s)	220, 436
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	2 cut(s)	264, 464
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	147, 241, 248, 316
HpyCH4V	TGCA	2 cut(s)	297, 371
HpyF3I	CTNAG	2 cut(s)	164, 262
Hsp92II	CATG	5 cut(s)	16, 89, 148, 441, 449
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	6 cut(s)	39, 78, 183, 249, 327, 470
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	3 cut(s)	344, 350, 353
MluCI	AATT	5 cut(s)	132, 170, 175, 221, 356
MnlI	CCTC	7 cut(s)	61, 116, 160, 236, 256, 288, 426
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	2 cut(s)	131, 306
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	5 cut(s)	16, 89, 148, 441, 449
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	449
PspPI	GGNCC	2 cut(s)	200, 275
SaqAI	TTAA	2 cut(s)	131, 306
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	200, 275
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	5 cut(s)	132, 170, 175, 221, 356
SsiI	CCGC	1 cut(s)	273
TasI	AATT	5 cut(s)	132, 170, 175, 221, 356
Tru1I	TTAA	2 cut(s)	131, 306
Tru9I	TTAA	2 cut(s)	131, 306
TspDTI	ATGAA	4 cut(s)	17, 351, 379, 488
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	449
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.