Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

22312806 .. 22314728

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACAAATTGAGAGGCATAACTAAGGGTCGAGGTAGACCCCGAGGAAACCTGTCGCATTTAGAGCATCTGGAACTTTCCTATGACTCAGAACTGAATGGAACTATTCTAGAAAGTATTGGACAACTCAGAGAATTACAGTACTTGGATTTCAGGGGTTGTCCATGGTCATCTAACTCTGTTGTTTTCAATGTCAATCATGAATGGATCCCTCCCTTCAATCTTGCATTTCTTACTATCACAGATTGCAAGCTTATGAATCCTGCATATCCAACGTGGCTCAGAGCTCAAAATTTCCTTAGAGACATAGCACCCATAGATGTTGGAATTTCATATACAATACCCGATTGGTTTTGGAGAATTTCACCTCTCCTCACGTGGTTGGAACTCTCTGACAATCAATTGAGAGGAGAAATTCCTAACTCCATAAATTCTCCTCTACAGTTCGTGAACAACAACAGCTTAGTAGGTTCCATTCCACTTTGGCCAAATCTAATAAATCTAAGCTTGGCAAGCAACAGATTTTCCGGACCAATTCCCTTCAACATTGGCAGTGAGATGTCAGAGTTGAGTGTCCCAGGCCTTTTGAGGAATAATACGAATGGTACTGTTCCCGCTTTCTCAAGTAAAATGAAATCACTTGTCTTTCTTCATCTCTCAAGGAATTATTTATCCGGAAATATTCCTAGGGATTGGATGGGTTTACAAGATTTGACCATCATAGACTTTTCAAACAACAACAATCAAATGGTTAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

253

Amino Acids

28.73

Weight (kDa)

6.42

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AccIII	TCCGGA	2 cut(s)	527, 674
AciI	CCGC	1 cut(s)	615
AclWI	GGATC	2 cut(s)	202, 215
AcoI	YGGCCR	1 cut(s)	485
AcsI	RAATTY	6 cut(s)	292, 327, 360, 414, 430, 755
AcvI	CACGTG	1 cut(s)	378
AfaI	GTAC	2 cut(s)	143, 607
AgsI	TTSAA	4 cut(s)	190, 220, 544, 732
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	4 cut(s)	253, 287, 462, 507
AluI	AGCT	4 cut(s)	253, 287, 462, 507
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	202, 215
Ama87I	CYCGRG	1 cut(s)	42
Aor13HI	TCCGGA	2 cut(s)	527, 674
AoxI	GGCC	2 cut(s)	485, 580
ApoI	RAATTY	6 cut(s)	292, 327, 360, 414, 430, 755
AspA2I	CCTAGG	1 cut(s)	686
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	357
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	530
AvrII	CCTAGG	1 cut(s)	686
BalI	TGGCCA	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	289
BbrPI	CACGTG	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	2 cut(s)	691, 725
BciT130I	CCWGG	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	2 cut(s)	110, 687
BfmI	CTRYAG	1 cut(s)	440
BlnI	CCTAGG	1 cut(s)	686
BmcAI	AGTACT	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	530
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	209, 472
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	76
BpuEI	CTTGAG	2 cut(s)	607, 643
BsaAI	YACGTR	1 cut(s)	378
BsaJI	CCNNGG	4 cut(s)	43, 164, 577, 686
BsaWI	WCCGGW	2 cut(s)	527, 674
BseAI	TCCGGA	2 cut(s)	527, 674
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	4 cut(s)	43, 164, 577, 686
BseGI	GGATG	1 cut(s)	702
BseMII	CTCAG	3 cut(s)	102, 142, 295
BseRI	GAGGAG	3 cut(s)	362, 423, 426
BshFI	GGCC	2 cut(s)	487, 582
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	528, 675
BslFI	GGGAC	1 cut(s)	560
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	487, 582
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp13I	TCCGGA	2 cut(s)	527, 674
Bsp143I	GATC	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	615
BspANI	GGCC	2 cut(s)	487, 582
BspCNI	CTCAG	3 cut(s)	101, 141, 294
BspEI	TCCGGA	2 cut(s)	527, 674
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	209, 472
BspPI	GGATC	2 cut(s)	202, 215
BssECI	CCNNGG	4 cut(s)	43, 164, 577, 686
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	164, 686
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	141, 444, 610
BstBAI	YACGTR	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	251, 514
BstDEI	CTNAG	7 cut(s)	24, 88, 128, 281, 299, 463, 503
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	702
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 513
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	577
BstSFI	CTRYAG	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	487, 582
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	702
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	251, 514
CciI	TCATGA	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	142, 606
CviAII	CATG	2 cut(s)	165, 200
CviJI	RGCY	7 cut(s)	253, 280, 287, 462, 487, 507, 582
CviKI_1	RGCY	7 cut(s)	253, 280, 287, 462, 487, 507, 582
CviQI	GTAC	2 cut(s)	142, 606
DdeI	CTNAG	7 cut(s)	24, 88, 128, 281, 299, 463, 503
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	164, 686
Eco147I	AGGCCT	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	287
Eco72I	CACGTG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	164, 686
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	164, 686
FaeI	CATG	2 cut(s)	168, 203
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	2 cut(s)	164, 199
FauI	CCCGC	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	37
FokI	GGATG	1 cut(s)	709
FriOI	GRGCYC	1 cut(s)	289
FspBI	CTAG	2 cut(s)	110, 687
HaeIII	GGCC	2 cut(s)	487, 582
HapII	CCGG	2 cut(s)	528, 675
Hin1II	CATG	2 cut(s)	168, 203
HindIII	AAGCTT	2 cut(s)	251, 505
HinfI	GANTC	2 cut(s)	86, 259
HpaII	CCGG	2 cut(s)	528, 675
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	3 cut(s)	38, 451, 704
Hpy188I	TCNGA	5 cut(s)	91, 131, 284, 394, 565
Hpy188III	TCNNGA	6 cut(s)	71, 110, 200, 448, 528, 675
Hpy8I	GTNNAC	3 cut(s)	38, 451, 704
HpyAV	CCTTC	2 cut(s)	226, 550
HpyCH4III	ACNGT	3 cut(s)	141, 444, 610
HpyCH4IV	ACGT	2 cut(s)	275, 377
HpyCH4V	TGCA	3 cut(s)	227, 249, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 513
HpyF3I	CTNAG	7 cut(s)	24, 88, 128, 281, 299, 463, 503
HpySE526I	ACGT	2 cut(s)	275, 377
Hsp92II	CATG	2 cut(s)	168, 203
Kpn2I	TCCGGA	2 cut(s)	527, 674
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	8 cut(s)	56, 65, 139, 276, 541, 564, 591, 688
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	110, 687
MaeII	ACGT	2 cut(s)	275, 377
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	1 cut(s)	641
MfeI	CAATTG	1 cut(s)	401
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	487
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	3 cut(s)	296, 304, 363
MnlI	CCTC	9 cut(s)	8, 26, 38, 222, 378, 383, 401, 447, 582
Mox20I	TGGCCA	1 cut(s)	487
MroI	TCCGGA	2 cut(s)	527, 674
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	487
MspI	CCGG	2 cut(s)	528, 675
MspR9I	CCNGG	1 cut(s)	579
MunI	CAATTG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	64, 513
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	168, 203
NlaIV	GGNNCC	2 cut(s)	209, 472
PagI	TCATGA	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	80
PmaCI	CACGTG	1 cut(s)	378
PmlI	CACGTG	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	577
PspCI	CACGTG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	209, 472
PspPI	GGNCC	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	2 cut(s)	143, 607
RsaNI	GTAC	2 cut(s)	142, 606
SacI	GAGCTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	753
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	530
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	622, 658
SmoI	CTYRAG	2 cut(s)	622, 658
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	1 cut(s)	615
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	2 cut(s)	110, 687
SstI	GAGCTC	1 cut(s)	289
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	2 cut(s)	164, 686
TaaI	ACNGT	3 cut(s)	141, 444, 610
TaiI	ACGT	2 cut(s)	278, 380
TaqI	TCGA	1 cut(s)	31
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	1 cut(s)	559
TspDTI	ATGAA	5 cut(s)	216, 272, 321, 641, 647
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	6 cut(s)	292, 327, 360, 414, 430, 755
XbaI	TCTAGA	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	110, 687
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.