Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

46693281 .. 46694087

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCAATAGGCAATCTGTCACATTTGCAGGCTCTGCACCTCACAGCAAATGTAATCTCTGGTCCACTTCCCACGTCAATAGGAGATCTGGAAAATTTACGCATGCTGGACCTCTTTGACAACTCAATCTCCGGTCCACTACCTACGTCAATAGGAAATCTGTCATGTTTACAGAGCCTGGCACTTGATGGAAACCCAAAATTGAATGGAACCATTCCAGAAAGTATTGGACAGCTTAGCAAGTTGAAGGATTTGTTTCTTTGGAGTTGTTGGGACGGCATCATATCTGAAAATCATTTTCAGAACCTCACAAAATTGGTACAGTTTGGTTTATCATGTCCTGCATCTAACCCTCTTGTTTTCACCTTCAGTCACAACTGGATTCCTCTCTTCAATCTTACGTGTCTCTCTATCACTGATTGCAAGCTAATGAGCCTTGCATTTCCAGCATGGCTGAGAACTCAAACATTCCTTACTAGTATAACTCTCTCAAATGTTGGAATTTCATACAGAATACCTGATTGGTTTCTGAGAAATTCACCATTCCTTGGAATGGTGGATCTTTCTAAGAACCAGTTAAGGGGAAGGCTTCCTAAATCGGTAAATTCACTTCTTCGAAATGTTTATTTGAATATCAACAGTTTGGAGGGTTCCCTTCCACTTTGGCCAAATGTAACAGATCTCATCTTGGCAAGCAATAGATTTTCAGGACCAATACCCTTAAACATTTGCAATCAGATGCCAATGTTGTCTAATCTAGATCTTTCAAGGAATAATATACACGGTTATTCCCGCTTTTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

268

Amino Acids

29.77

Weight (kDa)

7.64

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	2 - 178	1e-15	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	548
AciI	CCGC	1 cut(s)	793
AclWI	GGATC	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	665
AcsI	RAATTY	4 cut(s)	94, 501, 535, 604
AcuI	CTGAAG	1 cut(s)	352
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	3 cut(s)	548, 553, 580
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	6 cut(s)	205, 247, 394, 631, 768, 803
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AluBI	AGCT	2 cut(s)	235, 427
AluI	AGCT	2 cut(s)	235, 427
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	567
AlwNI	CAGNNNCTG	2 cut(s)	34, 178
AoxI	GGCC	1 cut(s)	665
ApoI	RAATTY	4 cut(s)	94, 501, 535, 604
AspS9I	GGNCC	4 cut(s)	62, 109, 134, 710
AsuHPI	GGTGA	2 cut(s)	355, 531
AsuII	TTCGAA	1 cut(s)	616
AvaII	GGWCC	4 cut(s)	62, 109, 134, 710
BalI	TGGCCA	1 cut(s)	667
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	410
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	477, 758
BglII	AGATCT	3 cut(s)	85, 679, 760
BlpI	GCTNAGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	4 cut(s)	62, 109, 134, 710
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	4 cut(s)	62, 109, 134, 710
BmiI	GGNNCC	2 cut(s)	211, 652
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	288, 353, 729
Bpu1102I	GCTNAGC	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	616
BsaAI	YACGTR	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	547
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	3 cut(s)	548, 553, 580
Bse1I	ACTGG	2 cut(s)	383, 574
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	547
BseLI	CCNNNNNNNGG	3 cut(s)	548, 553, 580
BseMII	CTCAG	2 cut(s)	446, 521
BseNI	ACTGG	2 cut(s)	383, 574
BsgI	GTGCAG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	667
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	548, 553, 580
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	667
Bsp119I	TTCGAA	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	85, 559, 679, 760
Bsp1720I	GCTNAGC	1 cut(s)	236
BspACI	CCGC	1 cut(s)	793
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	2 cut(s)	447, 522
BspLI	GGNNCC	2 cut(s)	211, 652
BspPI	GGATC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	383, 574
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	4 cut(s)	85, 559, 679, 760
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	324, 641, 785
Bst6I	CTCTTC	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	616
BstC8I	GCNNGC	4 cut(s)	30, 104, 425, 694
BstDEI	CTNAG	4 cut(s)	236, 455, 530, 567
BstKTI	GATC	4 cut(s)	88, 562, 682, 763
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	4 cut(s)	85, 559, 679, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 446
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	177
BstX2I	RGATCY	4 cut(s)	85, 559, 679, 760
BstYI	RGATCY	4 cut(s)	85, 559, 679, 760
BsuRI	GGCC	1 cut(s)	667
BtrI	CACGTC	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	4 cut(s)	30, 104, 425, 694
CaiI	CAGNNNCTG	2 cut(s)	34, 178
Cfr13I	GGNCC	4 cut(s)	62, 109, 134, 710
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	4 cut(s)	103, 165, 336, 450
CviJI	RGCY	8 cut(s)	32, 177, 235, 427, 435, 454, 589, 667
CviKI_1	RGCY	8 cut(s)	32, 177, 235, 427, 435, 454, 589, 667
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	4 cut(s)	236, 455, 530, 567
DpnI	GATC	4 cut(s)	87, 561, 681, 762
DpnII	GATC	4 cut(s)	85, 559, 679, 760
EaeI	YGGCCR	1 cut(s)	665
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	547
Eco47I	GGWCC	4 cut(s)	62, 109, 134, 710
Eco57I	CTGAAG	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	4 cut(s)	106, 168, 339, 453
FaiI	YATR	8 cut(s)	104, 166, 284, 337, 451, 482, 508, 779
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	4 cut(s)	102, 164, 335, 449
FauI	CCCGC	1 cut(s)	800
FspBI	CTAG	2 cut(s)	477, 758
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	4 cut(s)	106, 168, 339, 453
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	355, 531
Hpy166II	GTNNAC	3 cut(s)	65, 137, 170
Hpy188I	TCNGA	4 cut(s)	289, 303, 531, 738
Hpy188III	TCNNGA	4 cut(s)	89, 218, 708, 758
Hpy8I	GTNNAC	3 cut(s)	65, 137, 170
HpyAV	CCTTC	4 cut(s)	241, 376, 579, 665
HpyCH4III	ACNGT	3 cut(s)	324, 641, 785
HpyCH4IV	ACGT	3 cut(s)	74, 146, 401
HpyCH4V	TGCA	6 cut(s)	28, 37, 344, 423, 440, 732
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 446
HpyF3I	CTNAG	4 cut(s)	236, 455, 530, 567
HpySE526I	ACGT	3 cut(s)	74, 146, 401
Hsp92II	CATG	4 cut(s)	106, 168, 339, 453
Kzo9I	GATC	4 cut(s)	85, 559, 679, 760
LweI	GCATC	3 cut(s)	288, 353, 729
MaeI	CTAG	2 cut(s)	477, 758
MaeII	ACGT	3 cut(s)	74, 146, 401
MaeIII	GTNAC	3 cut(s)	18, 371, 673
MalI	GATC	4 cut(s)	87, 561, 681, 762
MboI	GATC	4 cut(s)	85, 559, 679, 760
MboII	GAAGA	2 cut(s)	382, 605
MflI	RGATCY	4 cut(s)	85, 559, 679, 760
MlsI	TGGCCA	1 cut(s)	667
MluCI	AATT	6 cut(s)	94, 200, 314, 501, 535, 604
MluNI	TGGCCA	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	6 cut(s)	50, 122, 317, 363, 396, 640
Mox20I	TGGCCA	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	667
MseI	TTAA	2 cut(s)	578, 722
Msp20I	TGGCCA	1 cut(s)	667
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	34, 446
NdeII	GATC	4 cut(s)	85, 559, 679, 760
NlaIII	CATG	4 cut(s)	106, 168, 339, 453
NlaIV	GGNNCC	2 cut(s)	211, 652
NmuCI	GTSAC	2 cut(s)	18, 371
NspI	RCATGY	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	616
PaeI	GCATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	548
Ppu21I	YACGTR	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	211, 652
PspPI	GGNCC	4 cut(s)	62, 109, 134, 710
PstNI	CAGNNNCTG	2 cut(s)	34, 178
PsuI	RGATCY	4 cut(s)	85, 559, 679, 760
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	578, 722
Sau3AI	GATC	4 cut(s)	85, 559, 679, 760
Sau96I	GGNCC	4 cut(s)	62, 109, 134, 710
ScrFI	CCNGG	1 cut(s)	179
SfaNI	GCATC	3 cut(s)	288, 353, 729
SfuI	TTCGAA	1 cut(s)	616
SinI	GGWCC	4 cut(s)	62, 109, 134, 710
SpeI	ACTAGT	1 cut(s)	476
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	6 cut(s)	94, 200, 314, 501, 535, 604
SsiI	CCGC	1 cut(s)	793
SspMI	CTAG	2 cut(s)	477, 758
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	3 cut(s)	324, 641, 785
TaiI	ACGT	3 cut(s)	77, 149, 404
TaqI	TCGA	1 cut(s)	616
TasI	AATT	6 cut(s)	94, 200, 314, 501, 535, 604
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	2 cut(s)	578, 722
Tru9I	TTAA	2 cut(s)	578, 722
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	18, 371
Tsp45I	GTSAC	2 cut(s)	18, 371
TspDTI	ATGAA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	4 cut(s)	62, 109, 134, 710
XapI	RAATTY	4 cut(s)	94, 501, 535, 604
XbaI	TCTAGA	1 cut(s)	757
XceI	RCATGY	1 cut(s)	106
XspI	CTAG	2 cut(s)	477, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.