RchiOBHm_Chr1g0354271

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
47301711 .. 47305501
3791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57985

Sequence Viewer

Length: 1506 bp
ATGTCAGAGTTGGAGTTTCTTGATCTCTCAAGGAATTATTTCTCTGGAATTATTCCTAGGGATTGGACGGATTTGCAATATTTGAAGGTCATAGACTTTTCAAATAACAATCTATCTGGTGAAATCCCAAGCTCCATGTGCTCCCAACTACCATCACTCCAATGGTTGAGATTAAGCAACAACAATCTTTCTGGGAATCTTGAGTCGTCTTTGCAAACTTGCAGAAATCTCTCTGCACTTGATCTGACAGGAAACAACTTTTCCGGCACCATACCAGATTGTATTGGAGAAAACCTTCATACATTGTCTTATTTAATTCTAAAAGCCAACAAGTTCACAGGAAATATTCCTCATCAATTATGTGATCTCTCCTCTCTTCAGGTTTTAGACCTTTCCCAAAATAATATATCTGGCTCCATTCCTGCATGTCTTGGTGGTTTGAAACAAATGGCAACAGGAGATGGCTTGCGTAGCGACTGGATGATGTACTTCTCGTCGCCTGCTAATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGTATATGAATATATTGATGATATCATAGAACTCATTAAAAAGTTTGACCTGTCAAGTAATAATCTATCGGGAGAAATACCAGAAGAGGTGAAAAATCTCATGGCTTTGGATAGCTTGAACTTATCTCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATAAGTTAGAAGCACTTGACCTCTCTGGTAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTGCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCTCACCTTCAATGACCCAACCTCATTTGAAGGAAACTCAGGACTTTGCGGACCTCCATTGCCAACACAATGCAGTTCAGTTAATGATCCAGCTGTGAAGGTTGACGAAGATGAAGAAGATAAGTATGGAAAATTATGGTTCTATGCAAGCACATCATTGGGGTTCATTGTAGGATTTTGGGTTGCTTTTGGAAGTTTGGTGATAAAGAGGTCATGGAGACATGCTTACTTCCAGTTTCTTGACAATATGAAAGACAAGCTTTGCTTCTGTTTTTGGAAAATTTCACCTCTCCTCACGTGGTTGGAACTCTCTGACAACCAGTTGAGAGGAGAACTTCCTAACTCCATAAATTCTCCTCTACAGTTCGTGTATTTGAACAACAACAGCTTGGTAGGTTCCATCCCACTTTGGCCAGTTCTAATAAATCTAAGCTTGGCAAGCAACAGATTTTCCAGACTAATTCCCCTAAACATTGGCAGTGAGATGTCAAAGTTAAGTGTGCCAGGTCTTTCGAGGAATAATATGAATGGCAGTGTTCCCCCTTTCTCAAGTAAAATGAAGTCACTGGTCTTTCTTGATTTCTCAAGGAATTATTTATCTGGAAATATTCCTAGGGATTGGATGGGTTTAAAAGATTTGACCATCATAGACTAA

Protein Analysis

501

Amino Acids

55.67

Weight (kDa)

5.18

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 63 1.2e-09 Leucine rich repeat
LRR_14 PF23598 69 - 150 1.4e-06 Leucine-rich repeat region
LRR_8 PF13855 75 - 136 1.8e-07 Leucine rich repeat
LRR_14 PF23598 204 - 269 1.6e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 1 cut(s) 900
AclWI GGATC 1 cut(s) 932
AcoI YGGCCR 1 cut(s) 1262
AcsI RAATTY 3 cut(s) 802, 1131, 1201
AcuI CTGAAG 1 cut(s) 362
AcvI CACGTG 1 cut(s) 1149
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 751
AjnI CCWGG 1 cut(s) 1354
AluBI AGCT 7 cut(s) 132, 654, 708, 944, 1111, 1239, 1284
AluI AGCT 7 cut(s) 132, 654, 708, 944, 1111, 1239, 1284
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 1063
AlwI GGATC 1 cut(s) 932
AoxI GGCC 2 cut(s) 827, 1262
ApoI RAATTY 3 cut(s) 802, 1131, 1201
Asp700I GAANNNNTTC 2 cut(s) 38, 294
AspA2I CCTAGG 2 cut(s) 56, 1463
AspS9I GGNCC 2 cut(s) 827, 902
AsuHPI GGTGA 5 cut(s) 131, 640, 847, 1063, 1128
AvaII GGWCC 1 cut(s) 902
AvrII CCTAGG 2 cut(s) 56, 1463
BalI TGGCCA 1 cut(s) 1264
BanI GGYRCC 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 1149
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 7 cut(s) 160, 455, 753, 844, 1259, 1468, 1502
BciT130I CCWGG 1 cut(s) 1356
BcoDI GTCTC 1 cut(s) 1063
BfaI CTAG 2 cut(s) 57, 1464
BfmI CTRYAG 1 cut(s) 1211
BlnI CCTAGG 2 cut(s) 56, 1463
Bme1390I CCNGG 1 cut(s) 1356
Bme18I GGWCC 1 cut(s) 902
BmgT120I GGNCC 2 cut(s) 827, 902
BmiI GGNNCC 3 cut(s) 268, 415, 1249
BmrFI CCNGG 1 cut(s) 1356
BpuEI CTTGAG 4 cut(s) 13, 221, 1384, 1420
BsaAI YACGTR 1 cut(s) 1149
BsaJI CCNNGG 2 cut(s) 56, 1463
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 751
Bse1I ACTGG 5 cut(s) 482, 1084, 1171, 1265, 1422
Bse3DI GCAATG 1 cut(s) 908
BseBI CCWGG 1 cut(s) 1356
BseDI CCNNGG 2 cut(s) 56, 1463
BseGI GGATG 3 cut(s) 486, 1251, 1479
BseLI CCNNNNNNNGG 1 cut(s) 751
BseMI GCAATG 1 cut(s) 908
BseMII CTCAG 1 cut(s) 903
BseNI ACTGG 5 cut(s) 482, 1084, 1171, 1265, 1422
BseRI GAGGAG 4 cut(s) 361, 1133, 1194, 1197
BsgI GTGCAG 2 cut(s) 219, 771
BshFI GGCC 2 cut(s) 829, 1264
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 751
BsmAI GTCTC 1 cut(s) 1063
BsnI GGCC 2 cut(s) 829, 1264
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 4 cut(s) 22, 241, 364, 937
BspACI CCGC 1 cut(s) 900
BspANI GGCC 2 cut(s) 829, 1264
BspCNI CTCAG 1 cut(s) 902
BspLI GGNNCC 3 cut(s) 268, 415, 1249
BspPI GGATC 1 cut(s) 932
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 908
BsrI ACTGG 5 cut(s) 482, 1084, 1171, 1265, 1422
BssECI CCNNGG 2 cut(s) 56, 1463
BssMI GATC 4 cut(s) 22, 241, 364, 937
BssT1I CCWWGG 2 cut(s) 56, 1463
Bst2UI CCWGG 1 cut(s) 1356
Bst4CI ACNGT 1 cut(s) 1215
Bst6I CTCTTC 2 cut(s) 381, 618
BstBAI YACGTR 1 cut(s) 1149
BstC8I GCNNGC 4 cut(s) 467, 501, 1000, 1291
BstDEI CTNAG 3 cut(s) 791, 889, 1280
BstEII GGTNACC 1 cut(s) 740
BstF5I GGATG 3 cut(s) 486, 1251, 1479
BstKTI GATC 4 cut(s) 25, 244, 367, 940
BstMAI GTCTC 1 cut(s) 1063
BstMBI GATC 4 cut(s) 22, 241, 364, 937
BstMWI GCNNNNNNNGC 3 cut(s) 138, 471, 1290
BstNI CCWGG 1 cut(s) 1356
BstNSI RCATGY 2 cut(s) 429, 1076
BstPI GGTNACC 1 cut(s) 740
BstSCI CCNGG 1 cut(s) 1354
BstSFI CTRYAG 1 cut(s) 1211
BsuRI GGCC 2 cut(s) 829, 1264
BtsCI GGATG 3 cut(s) 486, 1251, 1479
BtsI GCAGTG 2 cut(s) 1336, 1390
BtsIMutI CAGTG 3 cut(s) 1336, 1390, 1415
Cac8I GCNNGC 4 cut(s) 467, 501, 1000, 1291
Cfr13I GGNCC 2 cut(s) 827, 902
Csp6I GTAC 1 cut(s) 487
CviAII CATG 6 cut(s) 136, 426, 640, 772, 1065, 1073
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 3 cut(s) 791, 889, 1280
DpnI GATC 4 cut(s) 24, 243, 366, 939
DpnII GATC 4 cut(s) 22, 241, 364, 937
DraI TTTAAA 1 cut(s) 1482
EaeI YGGCCR 1 cut(s) 1262
Eam1104I CTCTTC 2 cut(s) 381, 618
EarI CTCTTC 2 cut(s) 381, 618
Eco130I CCWWGG 2 cut(s) 56, 1463
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 902
Eco57I CTGAAG 1 cut(s) 362
Eco72I CACGTG 1 cut(s) 1149
Eco91I GGTNACC 1 cut(s) 740
EcoO65I GGTNACC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 1354
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 2 cut(s) 56, 1463
EcoT22I ATGCAT 1 cut(s) 516
ErhI CCWWGG 2 cut(s) 56, 1463
FaeI CATG 6 cut(s) 139, 429, 643, 775, 1068, 1076
FalI AAGNNNNNCTT 4 cut(s) 1095, 1127, 1100, 1132
FatI CATG 6 cut(s) 135, 425, 639, 771, 1064, 1072
FokI GGATG 3 cut(s) 493, 1238, 1486
FspBI CTAG 2 cut(s) 57, 1464
HaeIII GGCC 2 cut(s) 829, 1264
HapII CCGG 1 cut(s) 264
Hin1II CATG 6 cut(s) 139, 429, 643, 775, 1068, 1076
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HindIII AAGCTT 3 cut(s) 706, 1109, 1282
HinfI GANTC 2 cut(s) 196, 203
HpaII CCGG 1 cut(s) 264
HphI GGTGA 5 cut(s) 131, 640, 847, 1063, 1128
Hpy166II GTNNAC 2 cut(s) 336, 955
Hpy188I TCNGA 4 cut(s) 7, 246, 704, 1165
Hpy188III TCNNGA 9 cut(s) 20, 45, 200, 609, 891, 1091, 1305, 1427, 1452
Hpy8I GTNNAC 2 cut(s) 336, 955
Hpy99I CGWCG 1 cut(s) 499
HpyAV CCTTC 6 cut(s) 79, 305, 774, 868, 875, 943
HpyCH4III ACNGT 1 cut(s) 1215
HpyCH4IV ACGT 1 cut(s) 1148
HpyCH4V TGCA 9 cut(s) 76, 214, 222, 236, 425, 514, 788, 924, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 471, 1290
HpyF3I CTNAG 3 cut(s) 791, 889, 1280
HpySE526I ACGT 1 cut(s) 1148
Hsp92II CATG 6 cut(s) 139, 429, 643, 775, 1068, 1076
Kzo9I GATC 4 cut(s) 22, 241, 364, 937
LmnI GCTCC 3 cut(s) 137, 146, 419
MaeI CTAG 2 cut(s) 57, 1464
MaeII ACGT 1 cut(s) 1148
MaeIII GTNAC 2 cut(s) 740, 1413
MalI GATC 4 cut(s) 24, 243, 366, 939
MboI GATC 4 cut(s) 22, 241, 364, 937
MboII GAAGA 5 cut(s) 368, 635, 971, 977, 980
MhlI GDGCHC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 1264
MluNI TGGCCA 1 cut(s) 1264
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 1134
Mox20I TGGCCA 1 cut(s) 1264
Mph1103I ATGCAT 1 cut(s) 516
MroXI GAANNNNTTC 2 cut(s) 38, 294
MscI TGGCCA 1 cut(s) 1264
MseI TTAA 8 cut(s) 173, 314, 524, 576, 758, 933, 1346, 1481
MslI CAYNNNNRTG 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 1264
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 1356
MvaI CCWGG 1 cut(s) 1356
MwoI GCNNNNNNNGC 3 cut(s) 138, 471, 1290
NdeII GATC 4 cut(s) 22, 241, 364, 937
NlaIII CATG 6 cut(s) 139, 429, 643, 775, 1068, 1076
NlaIV GGNNCC 3 cut(s) 268, 415, 1249
NmuCI GTSAC 1 cut(s) 1413
NsiI ATGCAT 1 cut(s) 516
NspI RCATGY 2 cut(s) 429, 1076
PdmI GAANNNNTTC 2 cut(s) 38, 294
PfeI GAWTC 1 cut(s) 196
PleI GAGTC 1 cut(s) 211
PmaCI CACGTG 1 cut(s) 1149
PmlI CACGTG 1 cut(s) 1149
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 1149
Psp6I CCWGG 1 cut(s) 1354
PspCI CACGTG 1 cut(s) 1149
PspEI GGTNACC 1 cut(s) 740
PspGI CCWGG 1 cut(s) 1354
PspN4I GGNNCC 3 cut(s) 268, 415, 1249
PspPI GGNCC 2 cut(s) 827, 902
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 8 cut(s) 173, 314, 524, 576, 758, 933, 1346, 1481
Sau3AI GATC 4 cut(s) 22, 241, 364, 937
Sau96I GGNCC 2 cut(s) 827, 902
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 1356
SduI GDGCHC 1 cut(s) 143
SfcI CTRYAG 1 cut(s) 1211
SinI GGWCC 1 cut(s) 902
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 4 cut(s) 28, 200, 1399, 1435
SmoI CTYRAG 4 cut(s) 28, 200, 1399, 1435
SsiI CCGC 1 cut(s) 900
SspI AATATT 3 cut(s) 80, 346, 1459
SspMI CTAG 2 cut(s) 57, 1464
StyD4I CCNGG 1 cut(s) 1354
StyI CCWWGG 2 cut(s) 56, 1463
TaaI ACNGT 1 cut(s) 1215
TaiI ACGT 1 cut(s) 1151
TaqI TCGA 2 cut(s) 519, 1364
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 8 cut(s) 173, 314, 524, 576, 758, 933, 1346, 1481
Tru9I TTAA 8 cut(s) 173, 314, 524, 576, 758, 933, 1346, 1481
TscAI CASTG 3 cut(s) 1336, 1390, 1422
TseFI GTSAC 1 cut(s) 1413
Tsp45I GTSAC 1 cut(s) 1413
TspDTI ATGAA 7 cut(s) 287, 561, 978, 1006, 1115, 1391, 1424
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 3 cut(s) 1336, 1390, 1422
VpaK11BI GGWCC 1 cut(s) 902
XapI RAATTY 3 cut(s) 802, 1131, 1201
XceI RCATGY 2 cut(s) 429, 1076
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XmaJI CCTAGG 2 cut(s) 56, 1463
XmnI GAANNNNTTC 2 cut(s) 38, 294
XspI CTAG 2 cut(s) 57, 1464
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.