Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

19962141 .. 19963220

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028200

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGAGAAATACCGAAGGAGATAACAAATCTCACCGCCTTGGGTAGTTTGAATTTGTCACATAACCGTTTGACTGGAAAGATACCAGATGGTATCGGAAGCTTACGTCTGTTAGAGGCTCTTGACCTCTCTAGTAATCATCTACGGGGTCCAATTCCTTCAAGCATGACCTCCATGACTTCACTAAGCAAATTGAACTTGTCACATAACAACTTTTCTGGGCCAATTCCATCAACCAACCAGTTCCTTACCTTCAACGATCCAACCTCATTTGGAGGAAACTCAGGGCTTTGTGGGCATCCATTGCCAACTGAATGCACCTCATCCTCCAACAATGATAAGGATCCGGAGTTTTTTGTATTTTGGGAAGAATGGGGGAAAGGTTATGGCGGAGCTGCGGAGAGTTTTGAAGGGATTGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

142

Amino Acids

15.04

Weight (kDa)

5.02

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	3 - 69	1.8e-07	Leucine-rich repeat region
LRR_8	PF13855	9 - 48	5.2e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	3 cut(s)	36, 390, 398
AclWI	GGATC	3 cut(s)	254, 338, 351
AcsI	RAATTY	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	52, 162, 196, 256, 410
AluBI	AGCT	2 cut(s)	102, 395
AluI	AGCT	2 cut(s)	102, 395
AlwI	GGATC	3 cut(s)	254, 338, 351
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	149, 221
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	2 cut(s)	83, 238
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 221
BmiI	GGNNCC	2 cut(s)	150, 345
BmsI	GCATC	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	79, 241
Bse3DI	GCAATG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	298, 323
BseJI	GATNNNNATC	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	79, 241
BseXI	GCAGC	1 cut(s)	382
BshFI	GGCC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	259, 343
BspACI	CCGC	3 cut(s)	36, 390, 398
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	296
BspEI	TCCGGA	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	150, 345
BspPI	GGATC	3 cut(s)	254, 338, 351
BsrDI	GCAATG	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	79, 241
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	259, 343
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	185, 283
BstF5I	GGATG	2 cut(s)	298, 323
BstKTI	GATC	2 cut(s)	262, 346
BstMBI	GATC	2 cut(s)	259, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 304
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	298, 323
Cfr13I	GGNCC	2 cut(s)	149, 221
CviAII	CATG	2 cut(s)	166, 175
CviJI	RGCY	5 cut(s)	102, 119, 223, 289, 395
CviKI_1	RGCY	5 cut(s)	102, 119, 223, 289, 395
DdeI	CTNAG	2 cut(s)	185, 283
DpnI	GATC	2 cut(s)	261, 345
DpnII	GATC	2 cut(s)	259, 343
EciI	GGCGGA	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	169, 178
FaiI	YATR	5 cut(s)	63, 167, 176, 207, 387
FatI	CATG	2 cut(s)	165, 174
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	285, 310
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	2 cut(s)	169, 178
HindIII	AAGCTT	1 cut(s)	100
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	2 cut(s)	122, 347
HpyAV	CCTTC	4 cut(s)	10, 168, 262, 404
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	318, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 304
HpyF3I	CTNAG	2 cut(s)	185, 283
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	169, 178
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	259, 343
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	6 cut(s)	60, 99, 204, 254, 270, 360
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	2 cut(s)	57, 201
MalI	GATC	2 cut(s)	261, 345
MboI	GATC	2 cut(s)	259, 343
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	4 cut(s)	52, 153, 191, 225
MmeI	TCCRAC	2 cut(s)	287, 354
MnlI	CCTC	7 cut(s)	109, 137, 181, 269, 277, 331, 337
MroI	TCCGGA	1 cut(s)	346
MseI	TTAA	1 cut(s)	424
MspI	CCGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	295, 304
NdeII	GATC	2 cut(s)	259, 343
NlaIII	CATG	2 cut(s)	169, 178
NlaIV	GGNNCC	2 cut(s)	150, 345
NmuCI	GTSAC	2 cut(s)	57, 201
PctI	GAATGC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	150, 345
PspPI	GGNCC	2 cut(s)	149, 221
PsuI	RGATCY	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	259, 343
Sau96I	GGNCC	2 cut(s)	149, 221
SetI	ASST	9 cut(s)	104, 109, 129, 173, 254, 269, 323, 385, 397
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	4 cut(s)	52, 153, 191, 225
SsiI	CCGC	3 cut(s)	36, 390, 398
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	109
TasI	AATT	4 cut(s)	52, 153, 191, 225
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	57, 201
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	57, 201
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.