RLG00000028221

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
20276315 .. 20279659
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028221

Sequence Viewer

Length: 1140 bp
ATGACAACAGGAGATGGCTTGCTTGGGAACTGGATGATGAACTTCACCAGGAGTCTTGATGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGATGATATCATAGGACTCATTAAAAAGTTAGACCTGTCAAGTAATAATCTATGGGGAGAAATACCAGAAGAGGTCAAAAATCTCATGGCTTTGGGTAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATGAGTTAGAAGCACTTGACCTCTCTAATAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTTCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCTCACCTTCAATGACCCAACCTCATTTGAAGGAAACTCAGGACTTTGCGGACCTCCATTGCCAACCCAATGCAGTTCAGTTAATGATCCAACTGTGAAGGTTGACGAAGATGAAGAAGATAAGCTGGGTCGGTTTTGGCCCAAACCACCCACCAGGCCACCACACTATGTTTTTGCACCATTTTTTGGTACCAACCTGCGGCAATCAAGCCCAACTGACATTCAACGTACCGAGAAACCTGTTTGGTTTTGGTCAATCCTCCAATGCTACAAGGACATGGAGCTTTCCTATAACTCAGAACTGAATGGAACTATTCTAGAAAGTATTGGACAACTCAGAGAGTTACAGTACTTGGATCTCAGGAGTTGTCCATGGGAATTGGAACTCTCTGACAACCAGTTGAGAGGAGAACTTCCTAACTCCATAAATTCTCCTCTACAGTTCGTGTATTTGAACAACAACAGCTTGGTTGGTTCCGTTCCACTTTGGCCAGATATAATAAATCTAAGCTTGGCAAGCAACAGATTTTCCAGACCAATTCCCCTAAACATTGGCAGTGAGATGTCAAAGTTAAGTGTGCCAGGTCTTTCGAGGAATAATATGAATGGCAGTGTTCCCCCTTTCTCAAGTAAAATGAAGTCACTGGTCTCTCTTGATTTCTCGAGGAATTATTTATCTGGAAATATTCCTAGGGATTGGATGGGTTTAAAAGATTTGACCATCATAGACTAA

Protein Analysis

380

Amino Acids

42.41

Weight (kDa)

4.84

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 45 - 102 2.3e-08 Leucine rich repeat
LRR_14 PF23598 45 - 121 3.7e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 612
Acc65I GGTACC 1 cut(s) 596
AccB1I GGYRCC 1 cut(s) 596
AccB7I CCANNNNNTGG 1 cut(s) 593
AciI CCGC 2 cut(s) 456, 607
AclWI GGATC 3 cut(s) 56, 488, 771
AcoI YGGCCR 1 cut(s) 896
AcsI RAATTY 2 cut(s) 358, 835
AfaI GTAC 3 cut(s) 598, 637, 758
AfiI CCNNNNNNNGG 3 cut(s) 307, 593, 606
AgsI TTSAA 8 cut(s) 214, 324, 358, 370, 418, 437, 632, 862
AjnI CCWGG 3 cut(s) 47, 560, 988
AluBI AGCT 6 cut(s) 210, 264, 532, 691, 873, 918
AluI AGCT 6 cut(s) 210, 264, 532, 691, 873, 918
Alw26I GTCTC 1 cut(s) 1060
AlwI GGATC 3 cut(s) 56, 488, 771
Ama87I CYCGRG 1 cut(s) 1069
AoxI GGCC 4 cut(s) 383, 545, 563, 896
ApoI RAATTY 2 cut(s) 358, 835
Asp718I GGTACC 1 cut(s) 596
AspA2I CCTAGG 1 cut(s) 1097
AspS9I GGNCC 3 cut(s) 383, 458, 546
AsuHPI GGTGA 2 cut(s) 37, 403
AvaI CYCGRG 1 cut(s) 1069
AvaII GGWCC 1 cut(s) 458
AvrII CCTAGG 1 cut(s) 1097
BalI TGGCCA 1 cut(s) 898
BanI GGYRCC 1 cut(s) 596
BccI CCATC 5 cut(s) 8, 309, 400, 1102, 1136
BciT130I CCWGG 3 cut(s) 49, 562, 990
BcoDI GTCTC 1 cut(s) 1060
BfaI CTAG 2 cut(s) 725, 1098
BfmI CTRYAG 1 cut(s) 845
BfuAI ACCTGC 1 cut(s) 612
BisI GCNGC 1 cut(s) 608
BlnI CCTAGG 1 cut(s) 1097
BlsI GCNGC 1 cut(s) 609
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 3 cut(s) 49, 562, 990
Bme18I GGWCC 1 cut(s) 458
BmeT110I CYCGRG 1 cut(s) 1069
BmgT120I GGNCC 3 cut(s) 383, 458, 546
BmiI GGNNCC 2 cut(s) 598, 883
BmrFI CCNGG 3 cut(s) 49, 562, 990
BpuEI CTTGAG 1 cut(s) 1018
BsaI GGTCTC 1 cut(s) 1060
BsaJI CCNNGG 2 cut(s) 779, 1097
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 593, 606
Bse1I ACTGG 3 cut(s) 35, 805, 1056
Bse3DI GCAATG 1 cut(s) 464
BseBI CCWGG 3 cut(s) 49, 562, 990
BseDI CCNNGG 2 cut(s) 779, 1097
BseGI GGATG 2 cut(s) 39, 1113
BseLI CCNNNNNNNGG 3 cut(s) 307, 593, 606
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 4 cut(s) 459, 717, 757, 781
BseNI ACTGG 3 cut(s) 35, 805, 1056
BseRI GAGGAG 2 cut(s) 828, 831
BseYI CCCAGC 1 cut(s) 532
BshFI GGCC 4 cut(s) 385, 547, 565, 898
BshNI GGYRCC 1 cut(s) 596
BsiHKCI CYCGRG 1 cut(s) 1069
BslI CCNNNNNNNGG 3 cut(s) 307, 593, 606
BsmAI GTCTC 1 cut(s) 1060
BsnI GGCC 4 cut(s) 385, 547, 565, 898
Bso31I GGTCTC 1 cut(s) 1060
BsoBI CYCGRG 1 cut(s) 1069
Bsp143I GATC 3 cut(s) 61, 493, 763
Bsp19I CCATGG 1 cut(s) 779
BspACI CCGC 2 cut(s) 456, 607
BspANI GGCC 4 cut(s) 385, 547, 565, 898
BspCNI CTCAG 4 cut(s) 458, 716, 756, 780
BspLI GGNNCC 2 cut(s) 598, 883
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 3 cut(s) 56, 488, 771
BspT107I GGYRCC 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 1060
BsrDI GCAATG 1 cut(s) 464
BsrI ACTGG 3 cut(s) 35, 805, 1056
BssECI CCNNGG 2 cut(s) 779, 1097
BssMI GATC 3 cut(s) 61, 493, 763
BssT1I CCWWGG 2 cut(s) 779, 1097
Bst2UI CCWGG 3 cut(s) 49, 562, 990
Bst4CI ACNGT 3 cut(s) 502, 756, 849
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 20, 925
BstDEI CTNAG 6 cut(s) 347, 445, 703, 743, 767, 914
BstDSI CCRYGG 1 cut(s) 779
BstF5I GGATG 2 cut(s) 39, 1113
BstKTI GATC 3 cut(s) 64, 496, 766
BstMAI GTCTC 1 cut(s) 1060
BstMBI GATC 3 cut(s) 61, 493, 763
BstMWI GCNNNNNNNGC 1 cut(s) 924
BstNI CCWGG 3 cut(s) 49, 562, 990
BstSCI CCNGG 3 cut(s) 47, 560, 988
BstSFI CTRYAG 1 cut(s) 845
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
BsuRI GGCC 4 cut(s) 385, 547, 565, 898
BtgI CCRYGG 1 cut(s) 779
BtsCI GGATG 2 cut(s) 39, 1113
BtsI GCAGTG 2 cut(s) 970, 1024
BtsIMutI CAGTG 3 cut(s) 970, 1024, 1049
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 20, 925
Cfr13I GGNCC 3 cut(s) 383, 458, 546
Csp6I GTAC 3 cut(s) 597, 636, 757
CviAII CATG 5 cut(s) 196, 269, 328, 685, 780
CviQI GTAC 3 cut(s) 597, 636, 757
DdeI CTNAG 6 cut(s) 347, 445, 703, 743, 767, 914
DpnI GATC 3 cut(s) 63, 495, 765
DpnII GATC 3 cut(s) 61, 493, 763
DraI TTTAAA 1 cut(s) 1116
EaeI YGGCCR 1 cut(s) 896
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 2 cut(s) 779, 1097
Eco31I GGTCTC 1 cut(s) 1060
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 1069
EcoRII CCWGG 3 cut(s) 47, 560, 988
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 779, 1097
EcoT22I ATGCAT 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 779, 1097
FaeI CATG 5 cut(s) 199, 272, 331, 688, 783
FatI CATG 5 cut(s) 195, 268, 327, 684, 779
Fnu4HI GCNGC 1 cut(s) 608
FokI GGATG 2 cut(s) 46, 1120
Fsp4HI GCNGC 1 cut(s) 608
FspBI CTAG 2 cut(s) 725, 1098
GluI GCNGC 1 cut(s) 608
GsaI CCCAGC 1 cut(s) 536
HaeIII GGCC 4 cut(s) 385, 547, 565, 898
Hin1II CATG 5 cut(s) 199, 272, 331, 688, 783
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 2 cut(s) 262, 916
HinfI GANTC 2 cut(s) 52, 126
HphI GGTGA 2 cut(s) 37, 403
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 4 cut(s) 260, 706, 746, 799
Hpy188III TCNNGA 8 cut(s) 56, 447, 725, 769, 939, 1061, 1069, 1086
Hpy8I GTNNAC 1 cut(s) 511
HpyAV CCTTC 4 cut(s) 330, 424, 431, 499
HpyCH4III ACNGT 3 cut(s) 502, 756, 849
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 3 cut(s) 70, 480, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 924
HpyF3I CTNAG 6 cut(s) 347, 445, 703, 743, 767, 914
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 5 cut(s) 199, 272, 331, 688, 783
KpnI GGTACC 1 cut(s) 600
Kzo9I GATC 3 cut(s) 61, 493, 763
LmnI GCTCC 1 cut(s) 688
MaeI CTAG 2 cut(s) 725, 1098
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 2 cut(s) 750, 1047
MalI GATC 3 cut(s) 63, 495, 765
MboI GATC 3 cut(s) 61, 493, 763
MboII GAAGA 4 cut(s) 191, 527, 533, 536
MflI RGATCY 1 cut(s) 763
MlsI TGGCCA 1 cut(s) 898
MluCI AATT 8 cut(s) 315, 353, 358, 404, 785, 835, 945, 1075
MluNI TGGCCA 1 cut(s) 898
MlyI GAGTC 2 cut(s) 61, 120
MmeI TCCRAC 1 cut(s) 521
Mox20I TGGCCA 1 cut(s) 898
Mph1103I ATGCAT 1 cut(s) 72
MscI TGGCCA 1 cut(s) 898
MseI TTAA 6 cut(s) 80, 132, 314, 489, 980, 1115
Msp20I TGGCCA 1 cut(s) 898
MspR9I CCNGG 3 cut(s) 49, 562, 990
MvaI CCWGG 3 cut(s) 49, 562, 990
MwoI GCNNNNNNNGC 1 cut(s) 924
NcoI CCATGG 1 cut(s) 779
NdeII GATC 3 cut(s) 61, 493, 763
NlaIII CATG 5 cut(s) 199, 272, 331, 688, 783
NlaIV GGNNCC 2 cut(s) 598, 883
NmuCI GTSAC 1 cut(s) 1047
NsiI ATGCAT 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 1069
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 1 cut(s) 609
PleI GAGTC 2 cut(s) 60, 120
PpsI GAGTC 2 cut(s) 60, 120
Psp6I CCWGG 3 cut(s) 47, 560, 988
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 3 cut(s) 47, 560, 988
PspN4I GGNNCC 2 cut(s) 598, 883
PspPI GGNCC 3 cut(s) 383, 458, 546
PsuI RGATCY 1 cut(s) 763
RsaI GTAC 3 cut(s) 598, 637, 758
RsaNI GTAC 3 cut(s) 597, 636, 757
SaqAI TTAA 6 cut(s) 80, 132, 314, 489, 980, 1115
SatI GCNGC 1 cut(s) 608
Sau3AI GATC 3 cut(s) 61, 493, 763
Sau96I GGNCC 3 cut(s) 383, 458, 546
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 2 cut(s) 61, 120
ScrFI CCNGG 3 cut(s) 49, 562, 990
SfcI CTRYAG 1 cut(s) 845
Sfr274I CTCGAG 1 cut(s) 1069
SinI GGWCC 1 cut(s) 458
SlaI CTCGAG 1 cut(s) 1069
SmlI CTYRAG 2 cut(s) 1033, 1069
SmoI CTYRAG 2 cut(s) 1033, 1069
Sse9I AATT 8 cut(s) 315, 353, 358, 404, 785, 835, 945, 1075
SsiI CCGC 2 cut(s) 456, 607
SspI AATATT 1 cut(s) 1093
SspMI CTAG 2 cut(s) 725, 1098
StyD4I CCNGG 3 cut(s) 47, 560, 988
StyI CCWWGG 2 cut(s) 779, 1097
TaaI ACNGT 3 cut(s) 502, 756, 849
TaiI ACGT 1 cut(s) 637
TaqI TCGA 3 cut(s) 75, 998, 1070
TasI AATT 8 cut(s) 315, 353, 358, 404, 785, 835, 945, 1075
TatI WGTACW 1 cut(s) 756
TauI GCSGC 1 cut(s) 610
Tru1I TTAA 6 cut(s) 80, 132, 314, 489, 980, 1115
Tru9I TTAA 6 cut(s) 80, 132, 314, 489, 980, 1115
TscAI CASTG 3 cut(s) 970, 1024, 1056
TseFI GTSAC 1 cut(s) 1047
Tsp45I GTSAC 1 cut(s) 1047
TspDTI ATGAA 5 cut(s) 53, 117, 534, 1025, 1058
TspGWI ACGGA 1 cut(s) 874
TspRI CASTG 3 cut(s) 970, 1024, 1056
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 458
XapI RAATTY 2 cut(s) 358, 835
XbaI TCTAGA 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 1069
XmaJI CCTAGG 1 cut(s) 1097
XspI CTAG 2 cut(s) 725, 1098
ZrmI AGTACT 1 cut(s) 758
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.