Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002930.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

20783 .. 21676

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002930.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atggatactgcttttccagtgtggctcaaaagtcaaaaattccttgagtacttaactcttaagagaggtggaatttcagatacaataccccattggttttggagatttgtaccattccttgagtatgtggcgttatctcataaccagttaagaggaaaccttcccaagtctgtgagttctcctcttcaatacgttaatttgaaaaataacagtttggtagggtcccttccactttggccaaatgtaacacaactaagcttggcaaacaataaattttcagggcctattcctctaaacattggccacgagatgtcagagttggagtttcttgatctctcaaggaattatttctctggaattattcctagggattggacgggtttgcaagatttgaaggtcatagacttttcaaataacaatctatctggtgaaatccctagctccatgtgctcccaactaccatcactcaaatggttgagattaagcaacaacaatctttctgggaatcttgagtcgtctttgcaaacttgcagaaatctctctgcacttgacctgacaggaaacaacttttccggcaccataccagattgtattggagaaaaccttcatacattgtcttatttaattctaaaagccaacaagttcacaggaaatattcctcatcaattatgtgatctctcctctcttcaggttttagacctttcccaaaataatatatctggctccattcctgcatgtcttggtggtttgaaacaaatggcaacaggagatggcttgcgtagcgactggatgatgtacttcaggtcgtctgctgatcctatgcatatcgaaaaatattcctcatcaattatgcgatctctcctctcttcaggttttagacctttcccaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

297

Amino Acids

33.18

Weight (kDa)

8.24

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	575
AclWI	GGATC	1 cut(s)	809
AcoI	YGGCCR	2 cut(s)	236, 301
AcsI	RAATTY	3 cut(s)	38, 72, 272
AcuI	CTGAAG	3 cut(s)	671, 784, 852
AfaI	GTAC	3 cut(s)	50, 111, 797
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	5 cut(s)	188, 202, 394, 411, 751
AluBI	AGCT	2 cut(s)	258, 441
AluI	AGCT	2 cut(s)	258, 441
Alw21I	GWGCWC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	809
AoxI	GGCC	3 cut(s)	236, 281, 301
ApoI	RAATTY	3 cut(s)	38, 72, 272
Asp700I	GAANNNNTTC	2 cut(s)	347, 603
AspA2I	CCTAGG	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	222, 281
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	222
AvrII	CCTAGG	1 cut(s)	365
BalI	TGGCCA	2 cut(s)	238, 303
BanI	GGYRCC	1 cut(s)	575
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	452
BccI	CCATC	2 cut(s)	469, 764
BfaI	CTAG	2 cut(s)	366, 438
BfrI	CTTAAG	1 cut(s)	59
BlnI	CCTAGG	1 cut(s)	365
BmcAI	AGTACT	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	222, 281
BmiI	GGNNCC	4 cut(s)	223, 224, 577, 724
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
BpuEI	CTTGAG	4 cut(s)	65, 140, 322, 530
BsaJI	CCNNGG	1 cut(s)	365
Bse1I	ACTGG	3 cut(s)	17, 145, 791
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	795
BseNI	ACTGG	3 cut(s)	17, 145, 791
BseRI	GAGGAG	3 cut(s)	171, 670, 851
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	238, 283, 303
BshNI	GGYRCC	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	238, 283, 303
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	4 cut(s)	331, 673, 814, 854
BspANI	GGCC	3 cut(s)	238, 283, 303
BspLI	GGNNCC	4 cut(s)	223, 224, 577, 724
BspPI	GGATC	1 cut(s)	809
BspT107I	GGYRCC	1 cut(s)	575
BspTI	CTTAAG	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	17, 145, 791
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	4 cut(s)	331, 673, 814, 854
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	3 cut(s)	189, 690, 871
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	776
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	795
BstKTI	GATC	4 cut(s)	334, 676, 817, 857
BstMBI	GATC	4 cut(s)	331, 673, 814, 854
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 780
BstNSI	RCATGY	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	238, 283, 303
BtsCI	GGATG	1 cut(s)	795
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	776
Cfr13I	GGNCC	2 cut(s)	222, 281
Csp6I	GTAC	3 cut(s)	49, 110, 796
CviAII	CATG	2 cut(s)	445, 735
CviJI	RGCY	9 cut(s)	25, 238, 258, 283, 303, 441, 635, 723, 774
CviKI_1	RGCY	9 cut(s)	25, 238, 258, 283, 303, 441, 635, 723, 774
CviQI	GTAC	3 cut(s)	49, 110, 796
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	4 cut(s)	333, 675, 816, 856
DpnII	GATC	4 cut(s)	331, 673, 814, 854
EaeI	YGGCCR	2 cut(s)	236, 301
Eam1104I	CTCTTC	3 cut(s)	189, 690, 871
EarI	CTCTTC	3 cut(s)	189, 690, 871
Eco130I	CCWWGG	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	3 cut(s)	671, 784, 852
EcoO109I	RGGNCCY	2 cut(s)	222, 281
EcoT14I	CCWWGG	1 cut(s)	365
EcoT22I	ATGCAT	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	448, 738
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	444, 734
FokI	GGATG	1 cut(s)	802
FspBI	CTAG	2 cut(s)	366, 438
HaeIII	GGCC	3 cut(s)	238, 283, 303
HapII	CCGG	1 cut(s)	573
Hin1II	CATG	2 cut(s)	448, 738
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	2 cut(s)	505, 512
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	2 cut(s)	79, 316
Hpy188III	TCNNGA	3 cut(s)	329, 354, 509
Hpy8I	GTNNAC	1 cut(s)	645
HpyAV	CCTTC	4 cut(s)	170, 236, 388, 614
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	6 cut(s)	385, 523, 531, 545, 734, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 780
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	448, 738
KflI	GGGWCCC	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	331, 673, 814, 854
LmnI	GCTCC	3 cut(s)	446, 455, 728
MaeI	CTAG	2 cut(s)	366, 438
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	4 cut(s)	333, 675, 816, 856
MboI	GATC	4 cut(s)	331, 673, 814, 854
MboII	GAAGA	3 cut(s)	176, 677, 858
MhlI	GDGCHC	1 cut(s)	452
MlsI	TGGCCA	2 cut(s)	238, 303
MluCI	AATT	9 cut(s)	38, 72, 196, 272, 343, 357, 624, 665, 846
MluNI	TGGCCA	2 cut(s)	238, 303
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	8 cut(s)	59, 146, 192, 300, 669, 691, 850, 872
Mox20I	TGGCCA	2 cut(s)	238, 303
Mph1103I	ATGCAT	1 cut(s)	825
MroXI	GAANNNNTTC	2 cut(s)	347, 603
MscI	TGGCCA	2 cut(s)	238, 303
MseI	TTAA	6 cut(s)	53, 60, 149, 195, 482, 623
MslI	CAYNNNNRTG	1 cut(s)	469
Msp20I	TGGCCA	2 cut(s)	238, 303
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	2 cut(s)	447, 780
NdeII	GATC	4 cut(s)	331, 673, 814, 854
NlaIII	CATG	2 cut(s)	448, 738
NlaIV	GGNNCC	4 cut(s)	223, 224, 577, 724
NsiI	ATGCAT	1 cut(s)	825
NspI	RCATGY	1 cut(s)	738
PdmI	GAANNNNTTC	2 cut(s)	347, 603
PfeI	GAWTC	1 cut(s)	505
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	222
PspN4I	GGNNCC	4 cut(s)	223, 224, 577, 724
PspPI	GGNCC	2 cut(s)	222, 281
PspPPI	RGGWCCY	1 cut(s)	222
RsaI	GTAC	3 cut(s)	50, 111, 797
RsaNI	GTAC	3 cut(s)	49, 110, 796
RseI	CAYNNNNRTG	1 cut(s)	469
SaqAI	TTAA	6 cut(s)	53, 60, 149, 195, 482, 623
Sau3AI	GATC	4 cut(s)	331, 673, 814, 854
Sau96I	GGNCC	2 cut(s)	222, 281
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	452
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	469
SmlI	CTYRAG	5 cut(s)	44, 59, 119, 337, 509
SmoI	CTYRAG	5 cut(s)	44, 59, 119, 337, 509
Sse9I	AATT	9 cut(s)	38, 72, 196, 272, 343, 357, 624, 665, 846
SspI	AATATT	2 cut(s)	655, 836
SspMI	CTAG	2 cut(s)	366, 438
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	828
TasI	AATT	9 cut(s)	38, 72, 196, 272, 343, 357, 624, 665, 846
TatI	WGTACW	2 cut(s)	48, 795
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	6 cut(s)	53, 60, 149, 195, 482, 623
Tru9I	TTAA	6 cut(s)	53, 60, 149, 195, 482, 623
TscAI	CASTG	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	596
TspRI	CASTG	1 cut(s)	24
Vha464I	CTTAAG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	3 cut(s)	38, 72, 272
XceI	RCATGY	1 cut(s)	738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XmaJI	CCTAGG	1 cut(s)	365
XmnI	GAANNNNTTC	2 cut(s)	347, 603
XspI	CTAG	2 cut(s)	366, 438
ZrmI	AGTACT	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.