Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

51251401 .. 51251640

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCTAGCATTAAACACTCCCTTCAACTTCTTTTAACAGCTTTTATTCTTTTTTCAATGCAATGCTCTATTTTCATTGAGGCCACAAAATCCAACTCTGGTTTTAAGAATATCACCGTTGCTTGCATTGCGGAGGAGAGGAAGGCCCTTCTTAAACACAAACAAGGCCTTAAAGATCCTTCTGGTCAGCTTTCTACTTGGGTTGGGGAAGACTGCTGCAAGTGGACTGGGGTAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

79

Amino Acids

8.66

Weight (kDa)

8.8

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	44 - 78	7.1e-11	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	26, 57
AluBI	AGCT	2 cut(s)	41, 190
AluI	AGCT	2 cut(s)	41, 190
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	81, 144, 166
ApeKI	GCWGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	6, 238
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	237
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	2 cut(s)	68, 126
BseMI	GCAATG	2 cut(s)	68, 126
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	3 cut(s)	83, 146, 168
BsnI	GGCC	3 cut(s)	83, 146, 168
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	3 cut(s)	83, 146, 168
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	170
BsrDI	GCAATG	2 cut(s)	68, 126
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	7, 124
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	83, 146, 168
Cac8I	GCNNGC	2 cut(s)	7, 124
Cfr13I	GGNCC	1 cut(s)	145
CviJI	RGCY	7 cut(s)	5, 41, 83, 146, 168, 190, 237
CviKI_1	RGCY	7 cut(s)	5, 41, 83, 146, 168, 190, 237
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	2 cut(s)	6, 238
GluI	GCNGC	1 cut(s)	217
HaeIII	GGCC	3 cut(s)	83, 146, 168
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	4 cut(s)	32, 136, 158, 189
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	61, 126, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	3 cut(s)	84, 168, 213
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	2 cut(s)	6, 238
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	73, 127, 132
MseI	TTAA	5 cut(s)	12, 35, 105, 153, 171
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	175
NheI	GCTAGC	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	175
SaqAI	TTAA	5 cut(s)	12, 35, 105, 153, 171
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	145
SetI	ASST	2 cut(s)	43, 192
SgeI	CNNG	7 cut(s)	18, 111, 135, 176, 195, 210, 232
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	6, 238
StuI	AGGCCT	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	118
Tru1I	TTAA	5 cut(s)	12, 35, 105, 153, 171
Tru9I	TTAA	5 cut(s)	12, 35, 105, 153, 171
TseI	GCWGC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	64
XspI	CTAG	2 cut(s)	6, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.