RLG00000028216

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
20203015 .. 20203739
725 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028216

Sequence Viewer

Length: 564 bp
ATGACAACAGGAGATGGCAAGCTTGGGAACTGGATGATGAACTTGACCAGGAGTCTTTATGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGATGGTATCATAGGACTCATTAAAAAGTTAGACCTGTCAAGTAATAATCTATGGGGAGAAATACCAGAAGAGTTCAAAAATCTCATGGCTTTGGGTAGCTTGAACTTATCCCATAACCATTTGACAGCAAAGATACCAGAGGGTATCGGAAGCTTGCATGAGTTAGAAGCACTTGACCTCTCTAATAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTTCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCCCACCTTCGATCCATCCTCATTTGAAGGAAACTACGGACTTTGTGGACCCCCATTGCCAACCCAATGCAGCTCAGCGCCCCCTAATGATCCAGCTGTGAATGAAGAAGTGACTCGTTTATCGAGGAGTTTAAGGGCCTGGAAGATGGTTGATTGA

Protein Analysis

188

Amino Acids

20.56

Weight (kDa)

5.01

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 45 - 102 3.3e-10 Leucine rich repeat
LRR_14 PF23598 46 - 121 3.5e-07 Leucine-rich repeat region
LRR_8 PF13855 88 - 126 7.9e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 56, 413, 491
AcsI RAATTY 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 6 cut(s) 187, 214, 324, 358, 370, 434
AhdI GACNNNNNGTC 1 cut(s) 51
AjnI CCWGG 2 cut(s) 47, 545
AluBI AGCT 5 cut(s) 22, 210, 264, 480, 503
AluI AGCT 5 cut(s) 22, 210, 264, 480, 503
AlwI GGATC 3 cut(s) 56, 413, 491
AoxI GGCC 2 cut(s) 383, 543
ApeKI GCWGC 1 cut(s) 477
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 3 cut(s) 383, 455, 543
AvaII GGWCC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 489
BccI CCATC 6 cut(s) 8, 107, 309, 400, 430, 547
BciT130I CCWGG 2 cut(s) 49, 547
BfoI RGCGCY 1 cut(s) 488
BisI GCNGC 1 cut(s) 478
BlpI GCTNAGC 1 cut(s) 481
BlsI GCNGC 1 cut(s) 479
Bme1390I CCNGG 2 cut(s) 49, 547
Bme18I GGWCC 1 cut(s) 455
BmeRI GACNNNNNGTC 1 cut(s) 51
BmgT120I GGNCC 3 cut(s) 383, 455, 543
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 49, 547
Bpu1102I GCTNAGC 1 cut(s) 481
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 461
BseBI CCWGG 2 cut(s) 49, 547
BseGI GGATG 2 cut(s) 39, 422
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 461
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 547
BseXI GCAGC 1 cut(s) 489
BshFI GGCC 2 cut(s) 385, 545
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 2 cut(s) 385, 545
Bsp143I GATC 3 cut(s) 61, 418, 496
Bsp1720I GCTNAGC 1 cut(s) 481
BspANI GGCC 2 cut(s) 385, 545
BspCNI CTCAG 1 cut(s) 494
BspLI GGNNCC 1 cut(s) 457
BspPI GGATC 3 cut(s) 56, 413, 491
BsrDI GCAATG 1 cut(s) 461
BsrI ACTGG 1 cut(s) 35
BssMI GATC 3 cut(s) 61, 418, 496
Bst2UI CCWGG 2 cut(s) 49, 547
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 20, 266
BstDEI CTNAG 2 cut(s) 347, 481
BstF5I GGATG 2 cut(s) 39, 422
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 3 cut(s) 64, 421, 499
BstMBI GATC 3 cut(s) 61, 418, 496
BstNI CCWGG 2 cut(s) 49, 547
BstSCI CCNGG 2 cut(s) 47, 545
BstV1I GCAGC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 385, 545
BtsCI GGATG 2 cut(s) 39, 422
Cac8I GCNNGC 2 cut(s) 20, 266
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 3 cut(s) 383, 455, 543
CviAII CATG 3 cut(s) 196, 269, 328
CviJI RGCY 9 cut(s) 22, 200, 210, 264, 385, 398, 480, 503, 545
CviKI_1 RGCY 9 cut(s) 22, 200, 210, 264, 385, 398, 480, 503, 545
DdeI CTNAG 2 cut(s) 347, 481
DpnI GATC 3 cut(s) 63, 420, 498
DpnII GATC 3 cut(s) 61, 418, 496
DriI GACNNNNNGTC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 174
Eam1105I GACNNNNNGTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 47, 545
EcoT22I ATGCAT 1 cut(s) 72
FaeI CATG 3 cut(s) 199, 272, 331
FatI CATG 3 cut(s) 195, 268, 327
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 2 cut(s) 46, 409
Fsp4HI GCNGC 1 cut(s) 478
GlaI GCGC 1 cut(s) 486
GluI GCNGC 1 cut(s) 478
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 2 cut(s) 385, 545
HhaI GCGC 1 cut(s) 487
Hin1II CATG 3 cut(s) 199, 272, 331
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HindIII AAGCTT 2 cut(s) 20, 262
HinfI GANTC 3 cut(s) 52, 126, 520
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 3 cut(s) 330, 424, 428
HpyCH4V TGCA 3 cut(s) 70, 268, 477
HpyF3I CTNAG 2 cut(s) 347, 481
Hsp92II CATG 3 cut(s) 199, 272, 331
HspAI GCGC 1 cut(s) 485
Kzo9I GATC 3 cut(s) 61, 418, 496
Lsp1109I GCAGC 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 517
MalI GATC 3 cut(s) 63, 420, 498
MboI GATC 3 cut(s) 61, 418, 496
MboII GAAGA 3 cut(s) 191, 524, 562
MluCI AATT 4 cut(s) 315, 353, 358, 404
MlyI GAGTC 3 cut(s) 61, 120, 514
MnlI CCTC 5 cut(s) 244, 299, 343, 436, 525
Mph1103I ATGCAT 1 cut(s) 72
MseI TTAA 4 cut(s) 80, 132, 314, 539
MspA1I CMGCKG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 49, 547
MvaI CCWGG 2 cut(s) 49, 547
NdeII GATC 3 cut(s) 61, 418, 496
NlaIII CATG 3 cut(s) 199, 272, 331
NlaIV GGNNCC 1 cut(s) 457
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 72
PkrI GCNGC 1 cut(s) 479
PleI GAGTC 3 cut(s) 60, 120, 514
PpsI GAGTC 3 cut(s) 60, 120, 514
Psp6I CCWGG 2 cut(s) 47, 545
PspGI CCWGG 2 cut(s) 47, 545
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 3 cut(s) 383, 455, 543
PvuII CAGCTG 1 cut(s) 503
SaqAI TTAA 4 cut(s) 80, 132, 314, 539
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 3 cut(s) 61, 418, 496
Sau96I GGNCC 3 cut(s) 383, 455, 543
SchI GAGTC 3 cut(s) 61, 120, 514
ScrFI CCNGG 2 cut(s) 49, 547
SetI ASST 9 cut(s) 24, 147, 212, 266, 291, 335, 416, 482, 505
SinI GGWCC 1 cut(s) 455
Sse9I AATT 4 cut(s) 315, 353, 358, 404
StyD4I CCNGG 2 cut(s) 47, 545
TaqI TCGA 3 cut(s) 75, 417, 530
TasI AATT 4 cut(s) 315, 353, 358, 404
Tru1I TTAA 4 cut(s) 80, 132, 314, 539
Tru9I TTAA 4 cut(s) 80, 132, 314, 539
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 53, 117, 525
TspGWI ACGGA 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.